Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1292600 Malus domestica HOM05D005407 ORTHO05D006544 3.4e-196 688.3 396 100.0
MD02G1181700 Malus domestica HOM05D005407 ORTHO05D006544 6.9e-133 478.0 400 76.2
Prupe.6G224800 Prunus persica HOM05D005407 ORTHO05D006544 1.1e-80 304.7 418 55.7
FAN23G2725 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.4e-45 186.0 386 44.0
FvH4_1g17130 Fragaria vesca HOM05D005407 ORTHO05D006544 7.1e-45 185.7 385 44.7
FAN19G1545 Fragaria x ananassa HOM05D005407 ORTHO05D006544 4.6e-44 183.0 385 44.4
FAN26G3453 Fragaria x ananassa HOM05D005407 ORTHO05D006544 7.9e-44 182.2 385 44.4
FAN28G2899 Fragaria x ananassa HOM05D005407 ORTHO05D006544 5.1e-43 179.5 383 45.7
CANSAT01G3084 Cannabis sativa HOM05D005407 ORTHO05D006544 4.5e-39 166.4 364 39.3
RcHm_v2.0_Chr2g0107301 Rosa chinensis HOM05D005407 ORTHO05D006544 2.1e-36 157.5 386 39.6
Gorai.007G220900 Gossypium raimondii HOM05D005407 ORTHO05D006544 3.4e-31 140.2 395 34.7
Gohir.A11G217700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 1.0e-30 138.7 397 35.0
Ciclev10025829m.g Citrus clementina HOM05D005407 ORTHO05D006544 1.3e-30 138.3 387 35.7
Gohir.D11G205800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.9e-30 137.1 395 34.4
Sabra07G0045500 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-29 135.2 381 37.3
QL06p039956 Quercus lobata HOM05D005407 ORTHO05D006544 1.4e-29 134.8 378 39.7
CiPaw.02G004700 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.9e-29 134.4 375 36.8
CsaV3_6G043820 Cucumis sativus L. HOM05D005407 ORTHO05D006544 9.3e-29 132.1 353 34.8
ClCG01G017290 Citrullus lanatus HOM05D005407 ORTHO05D006544 2.1e-28 131.0 384 35.2
Potri.007G051800 Populus trichocarpa HOM05D005407 ORTHO05D006544 2.1e-28 131.0 374 35.0
Duzib264G0474 Durio zibethinus HOM05D005407 ORTHO05D006544 1.0e-27 128.6 392 32.9
Nn5g30501 Nelumbo nucifera HOM05D005407 ORTHO05D006544 1.0e-27 128.6 375 32.0
Potri.005G145100 Populus trichocarpa HOM05D005407 ORTHO05D006544 1.8e-27 127.9 374 36.1
Manes.13G114000 Manihot esculenta HOM05D005407 ORTHO05D006544 6.7e-27 125.9 384 35.4
MELO3C007607.2 Cucumis melo HOM05D005407 ORTHO05D006544 1.9e-26 124.4 356 34.3
GSVIVG01000158001 Vitis vinifera HOM05D005407 ORTHO05D006544 5.7e-26 122.9 378 36.2
Cpa.g.sc6.55 Carica papaya HOM05D005407 ORTHO05D006544 1.3e-25 121.7 374 34.8
CiPaw.01G007800 Carya illinoinensis HOM05D005407 ORTHO05D006544 1.3e-25 121.7 374 34.8
Duzib187G0216 Durio zibethinus HOM05D005407 ORTHO05D006544 1.3e-25 121.7 392 33.2
Dinv26896 Davidia involucrata HOM05D005407 ORTHO05D006544 1.1e-24 118.6 372 34.4
Sabra05G0114800 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-24 118.6 345 35.4
Sabra05G0115900 Salix brachista HOM05D005407 ORTHO05D006544 1.1e-24 118.6 345 35.4
Cfa004094 Carpinus fangiana HOM05D005407 ORTHO05D006544 3.1e-24 117.1 369 37.4
Gohir.A12G074500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.3e-24 116.3 379 34.3
CAN.G1075.9 Capsicum annuum HOM05D005407 ORTHO05D006544 6.9e-24 115.9 349 33.0
TAR628G1677 Trochodendron aralioides HOM05D005407 ORTHO05D006544 6.9e-24 115.9 372 33.9
Gorai.008G080000 Gossypium raimondii HOM05D005407 ORTHO05D006544 9.0e-24 115.5 399 34.1
Nitab4.5_0003878g0070 Nicotiana tabacum HOM05D005407 ORTHO05D006544 9.0e-24 115.5 360 33.3
Nn1g04631 Nelumbo nucifera HOM05D005407 ORTHO05D006544 2.6e-23 114.0 358 30.4
Duzib147G1232 Durio zibethinus HOM05D005407 ORTHO05D006544 3.4e-23 113.6 386 35.2
Gohir.A02G153500 Gossypium hirsutum HOM05D005407 ORTHO05D006544 5.9e-23 112.8 357 33.1
Nitab4.5_0007941g0010 Nicotiana tabacum HOM05D005407 ORTHO05D006544 5.9e-23 112.8 360 32.5
Thecc.01G067900 Theobroma cacao HOM05D005407 ORTHO05D006544 5.9e-23 112.8 392 32.7
Gorai.003G028600 Gossypium raimondii HOM05D005407 ORTHO05D006544 1.3e-22 111.7 361 35.2
Haze_15320 Corylus avellana HOM05D005407 ORTHO05D006544 2.2e-22 110.9 368 33.4
Gohir.D03G026900 Gossypium hirsutum HOM05D005407 ORTHO05D006544 2.5e-21 107.5 361 35.2
Lj4g0004383 Lotus japonicus HOM05D005407 ORTHO05D006544 7.2e-21 105.9 359 34.0
Sopen02g037270 Solanum pennellii HOM05D005407 ORTHO05D006544 1.6e-20 104.8 376 31.4
Solyc02g092720.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 2.1e-20 104.4 377 31.0
Glyma.11G050800 Glycine max HOM05D005407 ORTHO05D006544 2.7e-20 104.0 362 33.1
PGSC0003DMG400024943 Solanum tuberosum HOM05D005407 ORTHO05D006544 2.7e-20 104.0 346 32.7
Gohir.D12G072700 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.6e-20 103.6 377 33.4
TPR.G23890 Trifolium pratense HOM05D005407 ORTHO05D006544 1.0e-19 102.1 363 33.6
Lj2g0008966 Lotus japonicus HOM05D005407 ORTHO05D006544 1.1e-18 98.6 381 31.2
Aqoxy6G02765 Aquilegia oxysepala HOM05D005407 ORTHO05D006544 3.3e-18 97.1 203 35.0
Eucgr.I00726 Eucalyptus grandis HOM05D005407 ORTHO05D006544 3.3e-18 97.1 406 30.3
Actinidia21238 Actinidia chinensis HOM05D005407 ORTHO05D006544 4.3e-18 96.7 375 31.7
Gorai.011G107400 Gossypium raimondii HOM05D005407 ORTHO05D006544 4.3e-18 96.7 315 31.4
Gohir.D10G097800 Gossypium hirsutum HOM05D005407 ORTHO05D006544 7.4e-18 95.9 315 31.1
arahy.Tifrunner.gnm1.ann1.IRX7P6 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.3e-17 95.1 281 35.9
MSTRG.23698 Avicennia marina HOM05D005407 ORTHO05D006544 1.7e-17 94.7 364 32.1
PSO541G0358 Papaver somniferum HOM05D005407 ORTHO05D006544 1.7e-17 94.7 408 29.4
PSO675G4008 Papaver somniferum HOM05D005407 ORTHO05D006544 1.4e-16 91.7 416 27.4
arahy.Tifrunner.gnm1.ann1.UV71K9 Arachis hypogaea HOM05D005407 ORTHO05D006544 1.8e-16 91.3 360 31.9
VMungo1011G0001 Vigna mungo HOM05D005407 ORTHO05D006544 2.4e-16 90.9 370 32.2
Gohir.A10G090300 Gossypium hirsutum HOM05D005407 ORTHO05D006544 3.1e-16 90.5 315 30.8
TWI09G0600 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.1e-16 90.5 280 36.8
PGR004G2820 Punica granatum HOM05D005407 ORTHO05D006544 4.1e-16 90.1 325 33.8
Sed0008783 Sechium edule HOM05D005407 ORTHO05D006544 6.9e-16 89.4 364 29.9
Glyma.01G191400 Glycine max HOM05D005407 ORTHO05D006544 9.1e-16 89.0 353 29.7
Oeu040602.1 Olea europaea HOM05D005407 ORTHO05D006544 9.1e-16 89.0 366 29.0
Psat4g083080 Pisum sativum HOM05D005407 ORTHO05D006544 1.5e-15 88.2 364 32.7
AT5G67350 Arabidopsis thaliana HOM05D005407 ORTHO05D006544 2.0e-15 87.8 220 35.0
AL8G43980 Arabidopsis lyrata HOM05D005407 ORTHO05D006544 3.4e-15 87.0 222 35.6
SGA_v2.0_scaffold15G07407 Striga asiatica HOM05D005407 ORTHO05D006544 1.7e-14 84.7 329 30.4
Cc07_g06740 Coffea canephora HOM05D005407 ORTHO05D006544 2.2e-14 84.3 352 29.8
THA.LOC104827519 Tarenaya hassleriana HOM05D005407 ORTHO05D006544 2.2e-14 84.3 228 35.5
VMungo1215G1030 Vigna mungo HOM05D005407 ORTHO05D006544 2.2e-14 84.3 361 30.2
Peaxi162Scf00365g00076 Petunia axillaris HOM05D005407 ORTHO05D006544 3.8e-14 83.6 274 33.9
TWI53G1118 Tripterygium wilfordii HOM05D005407 ORTHO05D006544 3.8e-14 83.6 372 28.5
MSTRG.3457 Avicennia marina HOM05D005407 ORTHO05D006544 6.5e-14 82.8 356 32.3
Phvul.002G013600 Phaseolus vulgaris HOM05D005407 ORTHO05D006544 6.5e-14 82.8 359 30.4
MSTRG.2839 Avicennia marina HOM05D005407 ORTHO05D006544 8.5e-14 82.4 331 32.0
Carub.0008s2714 Capsella rubella HOM05D005407 ORTHO05D006544 8.5e-14 82.4 192 37.5
SalBow1G5175 Salvia bowleyana HOM05D005407 ORTHO05D006544 1.9e-13 81.3 381 29.9
BcaC04g19788 Brassica carinata HOM05D005407 ORTHO05D006544 2.5e-13 80.9 227 33.9
C09p51650 Brassica napus HOM05D005407 ORTHO05D006544 2.5e-13 80.9 227 33.9
BolC9t58026H Brassica oleracea HOM05D005407 ORTHO05D006544 2.5e-13 80.9 227 33.9
Dinv30062 Davidia involucrata HOM05D005407 ORTHO05D006544 2.5e-13 80.9 302 33.8
EL10Ac6g15663 Beta vulgaris HOM05D005407 ORTHO05D006544 3.2e-13 80.5 391 32.7
BcaC04g23209 Brassica carinata HOM05D005407 ORTHO05D006544 3.2e-13 80.5 190 36.3
Actinidia32821 Actinidia chinensis HOM05D005407 ORTHO05D006544 5.5e-13 79.7 193 35.2
DCAR_021471 Daucus carota HOM05D005407 ORTHO05D006544 5.5e-13 79.7 369 28.5
Lalb_Chr16g0389101 Lupinus albus HOM05D005407 ORTHO05D006544 1.6e-12 78.2 327 30.9
Thhalv10005384m.g Eutrema salsugineum HOM05D005407 ORTHO05D006544 3.6e-12 77.0 224 33.9
Sp2g29310 Schrenkiella parvula HOM05D005407 ORTHO05D006544 3.6e-12 77.0 198 35.4
Lsat_1_v5_gn_4_162000 Lactuca sativa HOM05D005407 ORTHO05D006544 4.7e-12 76.6 350 28.3
C09p11100 Brassica napus HOM05D005407 ORTHO05D006544 6.1e-12 76.3 219 33.3
BolC7t42952H Brassica oleracea HOM05D005407 ORTHO05D006544 6.1e-12 76.3 211 34.6
BolC9t53999H Brassica oleracea HOM05D005407 ORTHO05D006544 7.9e-12 75.9 219 33.3
Lsat_1_v5_gn_3_87740 Lactuca sativa HOM05D005407 ORTHO05D006544 7.9e-12 75.9 265 31.3
A09p09420 Brassica napus HOM05D005407 ORTHO05D006544 1.0e-11 75.5 197 34.0
Glyma.05G103000 Glycine max HOM05D005407 ORTHO05D006544 1.0e-11 75.5 378 31.2
Solyc03g150114.1 Solanum lycopersicum HOM05D005407 ORTHO05D006544 1.4e-11 75.1 225 29.8
A07p16540 Brassica napus HOM05D005407 ORTHO05D006544 1.8e-11 74.7 211 34.1
BraA07t29378Z Brassica rapa HOM05D005407 ORTHO05D006544 1.8e-11 74.7 211 34.1
Atru.chr3.207 Acer truncatum HOM05D005407 ORTHO05D006544 2.3e-11 74.3 203 35.0
HanXRQChr12g0373231 Helianthus annuus HOM05D005407 ORTHO05D006544 3.9e-11 73.6 352 28.7
CARHR280260 Cardamine hirsuta HOM05D005407 ORTHO05D006544 8.8e-11 72.4 220 32.3
Glyma.17G164300 Glycine max HOM05D005407 ORTHO05D006544 8.8e-11 72.4 378 29.9
BraA09t36591Z Brassica rapa HOM05D005407 ORTHO05D006544 1.1e-10 72.0 226 31.9
Rhsim08G0096100 Rhododendron simsii HOM05D005407 ORTHO05D006544 3.3e-10 70.5 174 35.6
Migut.H00374 Erythranthe guttata HOM05D005407 ORTHO05D006544 4.4e-10 70.1 358 27.4
Manes.12G112400 Manihot esculenta HOM05D005407 ORTHO05D006544 5.7e-10 69.7 384 30.2
TAR376G1145 Trochodendron aralioides HOM05D005407 ORTHO05D006544 7.4e-10 69.3 240 32.1
CDE04G2817 Ceratophyllum demersum HOM05D005407 ORTHO05D006544 2.8e-09 67.4 198 29.3
SGA_v2.0_scaffold143G35780 Striga asiatica HOM05D005407 ORTHO05D006544 8.2e-09 65.9 214 33.2
ATR0661G396 Amborella trichopoda HOM05D005407 ORTHO05D006544 4.1e-08 63.5 190 32.1
BcaB04g20064 Brassica carinata HOM05D005407 ORTHO05D006544 5.3e-08 63.2 218 31.7
HPP92_007853 Vanilla planifolia HOM05D005407 ORTHO05D006544 5.3e-08 63.2 241 31.1
unitig_62.g23420 Utricularia gibba HOM05D005407 ORTHO05D006544 7.0e-08 62.8 158 33.5
Aa31LG1G15900 Aethionema arabicum HOM05D005407 ORTHO05D006544 1.2e-07 62.0 220 31.4
Medtr4g095320 Medicago truncatula HOM05D005407 ORTHO05D006544 2.0e-07 61.2 279 32.6
Peaxi162Scf00264g00321 Petunia axillaris HOM05D005407 ORTHO05D006544 2.6e-07 60.8 217 30.9
Sed0011473 Sechium edule HOM05D005407 ORTHO05D006544 5.9e-07 59.7 206 33.0
vmacro17985 Vaccinium macrocarpon HOM05D005407 ORTHO05D006544 7.7e-07 59.3 129 37.2
unitig_52.g17607 Utricularia gibba HOM05D005407 ORTHO05D006544 3.8e-06 57.0 220 32.7
Zm00001eb108270 Zea mays HOM05D013881 ORTHO05D016369 5.0e-06 56.6 153 34.0


User provided reference genes

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