Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 3.5e-113 411.8 227 100.0
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 6.4e-107 391.0 227 95.6
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 8.4e-99 364.0 227 87.2
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.6e-97 359.8 227 86.8
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 1.6e-97 359.8 227 88.1
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.1e-97 359.4 227 86.3
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 4.6e-97 358.2 227 86.3
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 1.5e-95 353.2 227 85.5
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 6.2e-94 347.8 227 84.6
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 1.2e-92 343.6 229 83.0
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.2e-91 339.3 227 82.4
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.2e-91 339.3 229 77.7
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.2e-91 339.3 229 77.7
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 3.8e-91 338.6 228 83.3
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 1.9e-90 336.3 231 80.5
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 2.4e-90 335.9 227 81.5
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.1e-89 332.8 227 81.1
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 1.3e-88 330.1 227 81.9
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.7e-88 329.7 216 75.0
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 3.9e-88 328.6 228 79.8
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 5.1e-88 328.2 228 80.3
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 2.5e-87 325.9 225 81.8
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.8e-86 322.4 225 77.3
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 2.8e-86 322.4 225 72.0
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 6.2e-86 321.2 225 79.1
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 6.2e-86 321.2 211 84.4
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 8.1e-86 320.9 225 77.8
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 1.4e-85 320.1 228 71.1
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 2.4e-85 319.3 225 79.1
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 5.3e-85 318.2 225 80.0
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.6e-84 315.8 225 78.2
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 9.9e-84 313.9 223 70.0
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 4.9e-83 311.6 228 78.1
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 1.1e-82 310.5 216 70.8
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.4e-82 310.1 214 79.9
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.9e-82 309.7 227 78.4
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 1.9e-82 309.7 225 77.3
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 9.3e-82 307.4 217 77.4
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 9.3e-82 307.4 225 76.4
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.6e-81 306.6 225 68.4
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.1e-81 306.2 236 75.8
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 2.7e-81 305.8 225 68.4
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 6.0e-81 304.7 217 68.7
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 1.3e-80 303.5 210 70.0
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 3.9e-80 302.0 215 76.7
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 5.1e-80 301.6 217 67.7
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 6.7e-80 301.2 208 82.2
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 6.7e-80 301.2 225 66.2
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 1.1e-79 300.4 226 73.5
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 1.5e-79 300.1 217 76.5
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 1.5e-79 300.1 210 73.3
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 2.5e-79 299.3 212 67.9
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 2.5e-79 299.3 217 77.9
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 3.3e-79 298.9 217 76.0
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 3.3e-79 298.9 226 73.5
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 3.3e-79 298.9 226 73.5
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 3.3e-79 298.9 217 76.0
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 3.3e-79 298.9 224 66.1
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 4.3e-79 298.5 226 73.0
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 9.6e-79 297.4 215 75.3
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 1.6e-78 296.6 214 72.9
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 2.1e-78 296.2 217 75.6
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 2.1e-78 296.2 222 73.9
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 2.8e-78 295.8 217 75.1
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 3.7e-78 295.4 217 76.0
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 3.7e-78 295.4 212 77.4
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 3.7e-78 295.4 214 74.3
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 4.8e-78 295.0 210 78.6
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 4.8e-78 295.0 271 56.8
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 6.2e-78 294.7 224 72.8
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 1.4e-77 293.5 210 71.4
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 3.1e-77 292.4 214 75.2
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 4.0e-77 292.0 226 73.5
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 4.0e-77 292.0 215 75.8
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 5.3e-77 291.6 216 75.5
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 5.3e-77 291.6 212 75.9
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 6.9e-77 291.2 210 78.1
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 9.0e-77 290.8 210 76.7
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 9.0e-77 290.8 212 75.5
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 9.0e-77 290.8 212 75.5
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 2.0e-76 289.7 226 65.0
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.0e-76 289.7 215 75.3
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 7.6e-76 287.7 210 76.7
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 2.2e-75 286.2 213 75.1
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 2.2e-75 286.2 221 65.6
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 2.9e-75 285.8 224 71.4
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 3.8e-75 285.4 166 81.9
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 3.8e-75 285.4 201 79.6
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 4.9e-75 285.0 217 72.4
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 6.5e-75 284.6 205 77.6
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.5e-74 282.7 209 76.6
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 4.2e-74 282.0 207 74.4
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 5.5e-74 281.6 202 79.2
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 7.1e-74 281.2 209 76.1
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 7.1e-74 281.2 215 73.5
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 9.3e-74 280.8 209 65.6
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 2.1e-73 279.6 168 79.8
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 2.7e-73 279.3 214 73.4
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 6.0e-73 278.1 210 76.2
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 5.1e-72 275.0 219 71.7
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.9e-71 273.1 214 71.5
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 4.3e-71 271.9 210 64.3
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 4.3e-71 271.9 222 68.0
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 1.1e-66 257.3 214 69.2
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 4.2e-66 255.4 222 62.6
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 6.1e-65 251.5 222 56.8
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.0e-64 250.8 207 64.7
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 2.5e-63 246.1 218 60.6
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 8.2e-62 241.1 221 55.2
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 1.5e-52 210.3 214 62.1
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 2.1e-49 199.9 166 59.6
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 3.0e-48 196.1 204 57.4
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.9e-48 195.7 227 57.7
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 1.5e-47 193.7 217 45.6
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 8.5e-43 177.9 214 51.4
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 1.4e-40 170.6 138 60.9
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 9.4e-34 147.9 156 45.5
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 3.6e-33 146.0 96 76.0
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 1.2e-20 104.4 103 71.8
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 6.6e-19 98.6 81 60.5
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 2.7e-12 76.6 47 70.2
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 9.5e-10 68.2 96 40.6
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 1.2e-07 61.2 54 57.4
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 5.8e-07 58.9 80 35.0
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 3.7e-06 56.2 133 30.8
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-06 56.2 141 32.6
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.7e-06 56.2 133 30.8
RcHm_v2.0_Chr5g0029101 Rosa chinensis HOM05D032618 ORTHO05D007999 4.9e-06 55.8 53 54.7
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.4e-06 55.5 140 32.1
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 8.3e-06 55.1 167 28.7


User provided reference genes

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