Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 9.5e-181 636.7 322 100.0
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.3e-148 530.0 327 83.2
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.0e-129 467.2 327 75.2
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 9.3e-128 460.7 322 74.2
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.3e-126 456.8 321 74.1
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.9e-123 444.5 322 72.4
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.5e-120 436.0 337 70.3
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 8.7e-118 427.6 321 68.8
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 2.9e-113 412.5 282 72.3
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 6.5e-113 411.4 327 66.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 7.2e-112 407.9 332 63.9
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.7e-111 406.0 319 64.9
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 3.6e-111 405.6 276 71.4
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 7.9e-111 404.4 266 71.8
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.0e-110 404.1 325 64.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 1.8e-110 403.3 268 72.8
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 3.0e-110 402.5 335 62.1
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 8.8e-110 401.0 329 63.8
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-109 399.8 322 66.8
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.0e-109 399.8 322 66.8
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 9.7e-109 397.5 328 64.3
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 1.4e-107 393.7 276 67.8
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 3.1e-107 392.5 276 70.3
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 9.1e-107 391.0 322 64.3
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.6e-106 389.4 300 65.3
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.6e-106 389.4 319 64.3
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 4.5e-106 388.7 339 63.4
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 8.5e-105 384.4 301 66.4
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 9.4e-104 380.9 303 65.7
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.6e-103 380.2 317 62.8
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 7.9e-103 377.9 271 66.1
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 7.9e-103 377.9 320 60.9
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.4e-102 377.1 271 66.1
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 5.1e-102 375.2 289 62.3
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 8.8e-102 374.4 288 64.2
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.1e-101 374.0 319 61.1
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 1.5e-101 373.6 275 65.8
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 5.7e-101 371.7 325 57.2
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 7.4e-101 371.3 316 61.1
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.4e-101 371.3 321 59.5
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 1.3e-100 370.5 315 61.3
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.2e-100 369.8 319 58.6
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.7e-100 369.0 304 61.8
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 6.3e-100 368.2 268 67.5
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.1e-99 367.5 306 60.5
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.1e-99 367.5 305 63.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.8e-99 366.7 272 68.8
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 4.1e-99 365.5 268 66.4
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 4.1e-99 365.5 325 59.4
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 9.1e-99 364.4 300 62.7
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 3.5e-98 362.5 304 61.2
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.5e-98 362.1 300 62.3
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 7.7e-98 361.3 316 59.5
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 7.7e-98 361.3 276 65.2
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.3e-97 360.5 305 58.7
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 1.7e-97 360.1 272 65.4
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 3.8e-97 359.0 274 63.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 5.0e-97 358.6 269 62.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 6.5e-97 358.2 283 64.7
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 8.5e-97 357.8 322 59.6
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.1e-95 353.2 299 60.5
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 2.3e-94 349.7 286 59.4
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 6.7e-94 348.2 289 60.2
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 1.5e-93 347.1 295 58.6
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 3.3e-93 345.9 285 61.8
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 1.3e-92 344.0 303 59.4
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.7e-92 343.6 326 56.4
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.1e-91 340.9 321 55.8
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 1.1e-91 340.9 325 58.2
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 5.3e-91 338.6 284 58.1
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 5.3e-91 338.6 297 57.2
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 5.3e-91 338.6 313 53.7
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.5e-90 335.9 313 54.0
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 7.7e-90 334.7 305 56.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.3e-89 334.0 318 55.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.2e-89 333.2 319 54.9
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 3.8e-89 332.4 318 53.1
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 4.2e-88 328.9 321 54.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 4.0e-86 322.4 266 60.2
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 4.0e-86 322.4 266 60.2
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.0e-86 322.4 300 55.7
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 1.2e-85 320.9 312 54.8
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 1.5e-85 320.5 326 53.1
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.0e-85 320.1 311 55.0
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.0e-85 320.1 328 52.1
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 3.4e-85 319.3 327 51.7
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 1.3e-84 317.4 324 53.7
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 1.7e-84 317.0 327 52.3
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.7e-84 317.0 327 51.7
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-84 316.2 321 52.3
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 7.0e-83 311.6 324 52.8
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.6e-82 310.5 325 52.0
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.6e-82 310.5 327 50.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 2.0e-82 310.1 287 55.7
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 2.0e-82 310.1 326 51.5
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.9e-81 306.2 237 68.4
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.9e-81 306.2 268 56.7
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 5.0e-81 305.4 312 52.9
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.6e-79 300.4 313 49.5
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 2.1e-79 300.1 315 51.4
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.0e-78 297.7 319 50.5
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 2.3e-78 296.6 322 50.6
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.5e-77 293.9 358 47.8
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.4e-77 292.4 326 50.3
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 4.4e-77 292.4 295 50.5
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.0e-75 285.0 268 51.1
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.2e-74 284.3 289 50.5
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.2e-74 284.3 307 45.9
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 4.5e-74 282.3 199 71.4
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 7.7e-74 281.6 304 46.4
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.0e-73 281.2 289 50.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 3.8e-73 279.3 267 52.8
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 3.8e-73 279.3 300 47.7
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.5e-72 276.6 202 68.8
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.5e-72 276.6 202 68.8
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.2e-71 274.2 301 47.5
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.8e-70 270.4 205 62.0
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 4.0e-70 269.2 272 51.5
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 5.2e-70 268.9 294 46.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 2.9e-68 263.1 238 52.5
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 8.3e-68 261.5 262 50.8
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 4.6e-66 255.8 254 50.8
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 7.8e-66 255.0 293 45.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.3e-62 243.4 311 45.3
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.5e-61 240.7 243 49.4
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 1.3e-60 237.7 198 62.1
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.6e-58 230.7 296 44.3
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.3e-54 216.9 291 41.6
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.3e-52 211.1 266 41.4
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 1.9e-51 207.2 315 39.4
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 4.1e-51 206.1 273 40.7
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 5.4e-51 205.7 175 57.7
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.6e-50 204.1 179 57.0
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.6e-49 198.4 271 41.0
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.9e-48 197.2 285 42.1
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 8.9e-46 188.3 262 40.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.2e-36 157.1 206 41.7
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.1e-27 128.3 96 68.8
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-26 122.9 113 63.7
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.6e-26 122.9 113 63.7
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 9.6e-24 115.2 209 34.4
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.1e-23 114.0 120 42.5
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 9.9e-21 105.1 81 63.0
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 4.9e-20 102.8 102 47.1
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.6e-18 96.3 129 40.3
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 6.0e-18 95.9 83 50.6
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 9.6e-16 88.6 196 32.1
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 3.7e-15 86.7 263 26.6
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 6.9e-14 82.4 197 29.9


User provided reference genes

Program Settings