Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1281500 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 2610.5 1329 100.0
MD02G1169100 Malus domestica HOM05D006144 ORTHO05D006357 0.0e+00 2263.4 1331 87.4
Prupe.7G136200 Prunus persica HOM05D006144 ORTHO05D006357 0.0e+00 1998.0 1336 78.7
RcHm_v2.0_Chr2g0105021 Rosa chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1788.9 1335 70.4
FAN26G0177 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1716.8 1337 67.8
FAN23G0857 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1708.3 1339 67.5
FAN19G3143 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1696.8 1338 67.5
FvH4_1g15710 Fragaria vesca HOM05D006144 ORTHO05D006357 0.0e+00 1688.7 1338 67.2
FAN28G0789 Fragaria x ananassa HOM05D006144 ORTHO05D006357 0.0e+00 1676.0 1282 69.0
Haze_15426 Corylus avellana HOM05D006144 ORTHO05D006357 0.0e+00 1464.5 1336 60.1
QL06p042250 Quercus lobata HOM05D006144 ORTHO05D006357 0.0e+00 1463.7 1341 60.0
Cfa003998 Carpinus fangiana HOM05D006144 ORTHO05D006357 0.0e+00 1458.0 1335 60.0
CiPaw.01G021400 Carya illinoinensis HOM05D006144 ORTHO05D006357 0.0e+00 1414.4 1328 58.4
Atru.chr3.396 Acer truncatum HOM05D006144 ORTHO05D006357 0.0e+00 1412.5 1345 57.3
Duzib147G1467 Durio zibethinus HOM05D006144 ORTHO05D006357 0.0e+00 1357.8 1353 55.8
Potri.005G136600 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1350.9 1343 56.4
Potri.007G041300 Populus trichocarpa HOM05D006144 ORTHO05D006357 0.0e+00 1335.9 1368 55.9
Thecc.01G052700 Theobroma cacao HOM05D006144 ORTHO05D006357 0.0e+00 1318.9 1323 54.9
Ciclev10024721m.g Citrus clementina HOM05D006144 ORTHO05D006357 0.0e+00 1318.1 1314 56.1
COL.COLO4_22183 Corchorus olitorius HOM05D006144 ORTHO05D006357 0.0e+00 1317.8 1322 54.9
CANSAT01G0270 Cannabis sativa HOM05D006144 ORTHO05D006357 0.0e+00 1315.1 1346 54.1
Gorai.007G053500 Gossypium raimondii HOM05D006144 ORTHO05D006357 0.0e+00 1307.7 1350 53.4
Gohir.A11G046100 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1303.5 1341 53.4
Gohir.D11G049700 Gossypium hirsutum HOM05D006144 ORTHO05D006357 0.0e+00 1299.3 1349 53.2
CSS0009151 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1297.3 1351 54.2
CSS0011451 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1293.1 1344 54.2
Manes.12G100500 Manihot esculenta HOM05D006144 ORTHO05D006357 0.0e+00 1280.0 1353 52.4
Actinidia36503 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1238.0 1324 53.2
TWI09G0039 Tripterygium wilfordii HOM05D006144 ORTHO05D006357 0.0e+00 1228.4 1346 50.9
Actinidia12060 Actinidia chinensis HOM05D006144 ORTHO05D006357 0.0e+00 1226.5 1322 52.6
Dinv39873 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1196.4 1337 51.8
Sabra07G0036900 Salix brachista HOM05D006144 ORTHO05D006357 0.0e+00 1190.3 1265 54.5
Hma1.2p1_0200F.1_g086100 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 0.0e+00 1169.5 1341 49.5
vmacro05326 Vaccinium macrocarpon HOM05D006144 ORTHO05D006357 0.0e+00 1140.2 1471 46.2
Rhsim10G0119800 Rhododendron simsii HOM05D006144 ORTHO05D006357 0.0e+00 1135.6 1317 50.3
CSS0044544 Camellia sinensis var. sinensis HOM05D006144 ORTHO05D006357 0.0e+00 1131.3 1257 51.2
CsaV3_6G043130 Cucumis sativus L. HOM05D006144 ORTHO05D006357 0.0e+00 1130.5 1342 47.9
Nn5g30196 Nelumbo nucifera HOM05D006144 ORTHO05D006357 0.0e+00 1125.5 1347 48.5
Dinv29969 Davidia involucrata HOM05D006144 ORTHO05D006357 0.0e+00 1115.9 1193 53.6
ClCG01G016710 Citrullus lanatus HOM05D006144 ORTHO05D006357 0.0e+00 1111.7 1347 47.6
Sed0018548 Sechium edule HOM05D006144 ORTHO05D006357 0.0e+00 1094.0 1334 46.9
Cc07_g05860 Coffea canephora HOM05D006144 ORTHO05D006357 0.0e+00 1088.9 1333 47.3
Glyma.11G057500 Glycine max HOM05D006144 ORTHO05D006357 0.0e+00 1083.6 1315 47.6
Nitab4.5_0000382g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 2.0e-309 1066.2 1327 46.5
Phvul.002G020300 Phaseolus vulgaris HOM05D006144 ORTHO05D006357 4.5e-309 1065.1 1316 47.2
Nitab4.5_0001684g0030 Nicotiana tabacum HOM05D006144 ORTHO05D006357 6.4e-308 1061.2 1327 46.2
Nn1g05861 Nelumbo nucifera HOM05D006144 ORTHO05D006357 7.1e-307 1057.7 1364 47.4
Glyma.01G184700 Glycine max HOM05D006144 ORTHO05D006357 1.6e-306 1056.6 1317 46.5
MELO3C007550.2 Cucumis melo HOM05D006144 ORTHO05D006357 8.7e-305 1050.8 1209 48.9
Peaxi162Scf00183g00711 Petunia axillaris HOM05D006144 ORTHO05D006357 2.8e-303 1045.8 1328 45.3
VMungo1215G0092 Vigna mungo HOM05D006144 ORTHO05D006357 1.4e-302 1043.5 1320 46.3
arahy.Tifrunner.gnm1.ann1.IY5EPV Arachis hypogaea HOM05D006144 ORTHO05D006357 1.0e-300 1037.3 1321 46.6
arahy.Tifrunner.gnm1.ann1.AH11HU Arachis hypogaea HOM05D006144 ORTHO05D006357 1.3e-300 1036.9 1321 46.6
Lj2g0024358 Lotus japonicus HOM05D006144 ORTHO05D006357 1.7e-300 1036.6 1321 45.8
Lalb_Chr16g0388301 Lupinus albus HOM05D006144 ORTHO05D006357 3.8e-300 1035.4 1337 45.3
Eucgr.H01999 Eucalyptus grandis HOM05D006144 ORTHO05D006357 7.9e-298 1027.7 1329 46.4
Oeu003786.1 Olea europaea HOM05D006144 ORTHO05D006357 1.3e-297 1026.9 1235 47.0
Ca_24781_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.9e-296 1023.1 1334 45.5
TPR.G31101 Trifolium pratense HOM05D006144 ORTHO05D006357 5.7e-296 1021.5 1313 45.6
PGSC0003DMG400019754 Solanum tuberosum HOM05D006144 ORTHO05D006357 1.6e-295 1020.0 1286 45.4
Psat0s3889g0080 Pisum sativum HOM05D006144 ORTHO05D006357 2.1e-295 1019.6 1337 45.0
Solyc03g044620.4 Solanum lycopersicum HOM05D006144 ORTHO05D006357 6.2e-295 1018.1 1336 44.4
CAN.G11.1 Capsicum annuum HOM05D006144 ORTHO05D006357 5.5e-291 1005.0 1335 44.1
Sopen03g008900 Solanum pennellii HOM05D006144 ORTHO05D006357 6.3e-287 991.5 1337 43.6
Oeu049306.1 Olea europaea HOM05D006144 ORTHO05D006357 4.1e-286 988.8 1273 45.8
Aqoxy6G01406 Aquilegia oxysepala HOM05D006144 ORTHO05D006357 9.0e-286 987.6 1319 44.3
PGR102G0121 Punica granatum HOM05D006144 ORTHO05D006357 4.6e-282 975.3 1358 44.0
DCAR_025720 Daucus carota HOM05D006144 ORTHO05D006357 2.6e-277 959.5 1331 43.4
Migut.H00451 Erythranthe guttata HOM05D006144 ORTHO05D006357 1.4e-270 937.2 1332 43.2
MSTRG.2895 Avicennia marina HOM05D006144 ORTHO05D006357 1.8e-270 936.8 1334 43.5
Lalb_Chr09g0333701 Lupinus albus HOM05D006144 ORTHO05D006357 3.9e-265 919.1 1331 42.1
MBI06_g08189_MAGBIO Magnolia biondii HOM05D006144 ORTHO05D006357 1.8e-262 910.2 1344 42.4
Oeu004869.1 Olea europaea HOM05D006144 ORTHO05D006357 1.4e-254 884.0 1318 42.0
THA.LOC104826201 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 2.9e-252 876.3 1345 41.6
Hund13563 Selenicereus undatus HOM05D006144 ORTHO05D006357 1.2e-245 854.4 1317 40.8
Sc03g0001430 Simmondsia chinensis HOM05D006144 ORTHO05D006357 2.8e-226 790.0 1350 38.8
EL10Ac6g15152 Beta vulgaris HOM05D006144 ORTHO05D006357 8.1e-226 788.5 1310 38.9
SGA_v2.0_scaffold204G41590 Striga asiatica HOM05D006144 ORTHO05D006357 1.1e-217 761.5 1334 38.5
ATR0104G015 Amborella trichopoda HOM05D006144 ORTHO05D006357 7.8e-213 745.3 1339 39.2
AUR62003855 Chenopodium quinoa HOM05D006144 ORTHO05D006357 6.2e-210 735.7 1318 38.4
THA.LOC104804508 Tarenaya hassleriana HOM05D006144 ORTHO05D006357 4.0e-209 733.0 1091 41.8
GSVIVG01002633001 Vitis vinifera HOM05D006144 ORTHO05D006357 7.6e-208 728.8 696 59.5
TAR381G1042 Trochodendron aralioides HOM05D006144 ORTHO05D006357 2.1e-202 710.7 729 56.1
AUR62001952 Chenopodium quinoa HOM05D006144 ORTHO05D006357 4.4e-200 703.0 1218 38.3
HanXRQChr14g0430551 Helianthus annuus HOM05D006144 ORTHO05D006357 7.1e-198 695.7 1147 38.7
Ah.03g144510 Amaranthus hybridus HOM05D006144 ORTHO05D006357 6.9e-193 679.1 1235 37.2
Cpa.g.sc55.182 Carica papaya HOM05D006144 ORTHO05D006357 1.2e-189 668.3 705 54.2
ECA232G0891 Erigeron canadensis HOM05D006144 ORTHO05D006357 1.2e-189 668.3 1105 39.4
HPP92_004081 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.7e-189 667.2 1340 35.0
Os03g0186500 Oryza sativa ssp. japonica HOM05D006144 ORTHO05D006357 1.4e-182 644.8 1193 36.5
Lj4C140T7 Lonicera japonica HOM05D006144 ORTHO05D006357 1.3e-180 638.3 702 53.1
Lsat_1_v5_gn_4_167780 Lactuca sativa HOM05D006144 ORTHO05D006357 4.3e-171 606.7 1176 36.0
Zm00001eb006470 Zea mays HOM05D006144 ORTHO05D006357 2.9e-167 594.0 1322 33.6
CDE03G0440 Ceratophyllum demersum HOM05D006144 ORTHO05D006357 2.1e-165 587.8 1293 34.2
Lj4A140T30 Lonicera japonica HOM05D006144 ORTHO05D006357 3.4e-160 570.5 644 48.8
PSO675G0817 Papaver somniferum HOM05D006144 ORTHO05D006357 9.7e-155 552.4 730 46.4
TAR381G0606 Trochodendron aralioides HOM05D006144 ORTHO05D006357 1.3e-151 542.0 570 52.8
Cpa.g.sc55.178 Carica papaya HOM05D006144 ORTHO05D006357 8.5e-151 539.3 635 48.3
PSO541G4136 Papaver somniferum HOM05D006144 ORTHO05D006357 1.4e-140 505.4 724 44.2
Ca_22186_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 1.7e-135 488.4 763 42.1
Psat4g089200 Pisum sativum HOM05D006144 ORTHO05D006357 2.7e-128 464.5 790 39.9
Hma1.2p1_1415F.1_g282000 Hydrangea macrophylla HOM05D006144 ORTHO05D006357 4.4e-107 394.0 682 38.7
HPP92_004109 Vanilla planifolia HOM05D006144 ORTHO05D006357 2.7e-104 384.8 780 33.1
MSTRG.23764 Avicennia marina HOM05D006144 ORTHO05D006357 5.6e-102 377.1 696 39.4
TPR.G640 Trifolium pratense HOM05D006144 ORTHO05D006357 4.6e-96 357.5 319 57.1
unitig_736.g22372 Utricularia gibba HOM05D006144 ORTHO05D006357 7.3e-94 350.1 689 35.4
Mapoly0063s0034 Marchantia polymorpha HOM05D006144 ORTHO05D006357 7.8e-88 330.1 795 30.3
Mapoly0063s0038 Marchantia polymorpha HOM05D006144 ORTHO05D006357 3.0e-87 328.2 1124 29.4
SEGI_14166 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.8e-71 275.8 630 31.4
SEGI_17223 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 1.1e-70 273.1 882 30.0
SMO301G0037 Selaginella moellendorffii HOM05D006144 ORTHO05D006357 2.4e-68 265.4 1177 27.1
AUR62039591 Chenopodium quinoa HOM05D006144 ORTHO05D006357 8.8e-47 193.7 348 34.5
AUR62013383 Chenopodium quinoa HOM05D006144 ORTHO05D006017 5.9e-43 181.0 294 36.7
Aa31LG1G15380 Aethionema arabicum HOM05D012861 ORTHO05D006357 2.5e-41 175.6 609 29.9
AT5G66820 Arabidopsis thaliana HOM05D012861 ORTHO05D006357 3.3e-38 165.2 575 31.1
unitig_736.g22373 Utricularia gibba HOM05D006144 ORTHO05D006357 7.5e-30 137.5 260 30.4
Dinv29968 Davidia involucrata HOM05D000370 ORTHO05D001366 2.4e-28 132.5 116 57.8
Ca_06605_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 4.0e-23 115.2 321 36.8
Pp3c4_25960 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.0e-23 115.2 381 25.7
Ca_06861_v3 Cicer arietinum L. HOM05D006144 ORTHO05D006357 5.2e-23 114.8 321 36.8
unitig_736.g22374 Utricularia gibba HOM05D006144 ORTHO05D006357 2.6e-22 112.5 212 34.0
Pp3c26_5160 Physcomitrium patens HOM05D006144 ORTHO05D006357 4.4e-22 111.7 421 25.4
Sp2g29830 Schrenkiella parvula HOM05D012861 ORTHO05D006357 5.4e-20 104.8 582 26.3
AL8G44580 Arabidopsis lyrata HOM05D012861 ORTHO05D006357 9.1e-20 104.0 578 26.6
Sabra05G0109200 Salix brachista HOM05D006144 ORTHO05D006357 3.5e-19 102.1 189 41.8
CBR_g31222 Chara braunii HOM05D006144 ORTHO05D006357 1.5e-17 96.7 148 35.1
Thhalv10004001m.g Eutrema salsugineum HOM05D012861 ORTHO05D006357 9.5e-17 94.0 659 25.9
Carub.0008s2766 Capsella rubella HOM05D012861 ORTHO05D006357 1.2e-16 93.6 512 27.0
BcaB02g09983 Brassica carinata HOM05D012861 ORTHO05D006357 1.2e-14 87.0 198 35.4
MCO09G582 Micromonas commoda HOM05D006144 ORTHO05D006357 5.7e-14 84.7 387 23.0
Sabra05G0109100 Salix brachista HOM05D006144 ORTHO05D006357 5.7e-14 84.7 184 34.2
A07p17060 Brassica napus HOM05D012861 ORTHO05D006357 9.8e-14 84.0 553 27.7
BraA07t29433Z Brassica rapa HOM05D012861 ORTHO05D006357 9.8e-14 84.0 553 27.7
Sc11g0005350 Simmondsia chinensis HOM05D006144 ORTHO05D006357 1.7e-13 83.2 139 34.5
AagrBONN_evm.TU.Sc2ySwM_228.442 Anthoceros agrestis HOM05D006144 ORTHO05D006357 1.1e-12 80.5 302 22.2
CARHR280840 Cardamine hirsuta HOM05D012861 ORTHO05D006357 1.4e-12 80.1 574 23.7
BcaC06g34756 Brassica carinata HOM05D012861 ORTHO05D006357 1.7e-10 73.2 391 28.6
TPR.G19009 Trifolium pratense HOM05D006144 ORTHO05D006357 2.3e-10 72.8 170 34.7
BolC7t43021H Brassica oleracea HOM05D012861 ORTHO05D006357 6.6e-10 71.2 389 28.3
Medtr8g079870 Medicago truncatula HOM05D006144 ORTHO05D006357 2.1e-08 66.2 81 48.1
C07p24920 Brassica napus HOM05D012861 ORTHO05D006357 3.6e-08 65.5 388 27.3
SEGI_01818 Sequoiadendron giganteum HOM05D006144 ORTHO05D006357 2.6e-06 59.3 90 36.7


User provided reference genes

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