Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 0.0e+00 1148.7 576 100.0
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 9.0e-291 1003.0 577 87.7
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.3e-289 999.2 570 87.5
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.7e-261 903.3 576 77.6
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.3e-260 902.9 576 77.6
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.0e-258 895.6 576 76.6
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 5.9e-258 894.0 576 77.4
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 2.5e-256 888.6 576 76.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 3.7e-244 848.2 577 71.4
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 1.1e-243 846.7 576 71.2
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.4e-243 846.3 576 72.4
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 2.4e-243 845.5 576 71.2
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 1.6e-242 842.8 576 72.0
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 2.7e-242 842.0 576 72.4
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 4.5e-242 841.3 576 73.3
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 2.3e-241 839.0 576 71.2
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 6.6e-241 837.4 576 70.5
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 5.7e-237 824.3 576 70.3
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 1.1e-235 820.1 575 72.2
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 2.4e-235 818.9 578 71.8
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 4.1e-235 818.1 587 71.4
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 7.8e-234 813.9 576 70.1
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 1.3e-228 796.6 576 67.4
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 3.7e-228 795.0 575 67.5
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 1.4e-227 793.1 576 68.1
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 1.4e-227 793.1 576 68.6
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.7e-226 788.9 577 67.6
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 8.6e-225 783.9 576 68.6
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.1e-223 779.2 576 67.9
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.2e-221 773.5 578 66.8
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.7e-220 769.6 576 67.5
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 2.2e-220 769.2 577 65.0
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 1.9e-219 766.1 579 67.0
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 5.4e-219 764.6 576 66.8
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 1.7e-217 759.6 576 65.3
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 1.5e-216 756.5 576 66.7
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 3.3e-216 755.4 577 66.0
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.2e-215 753.4 577 66.9
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.1e-215 752.7 576 64.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 2.3e-214 749.2 596 64.8
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.6e-213 745.7 577 64.3
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.4e-213 745.0 576 64.4
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 7.5e-213 744.2 576 64.9
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 7.5e-213 744.2 579 62.3
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 2.4e-211 739.2 576 64.6
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 2.4e-211 739.2 577 63.8
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 2.1e-210 736.1 578 65.6
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 2.7e-210 735.7 577 64.3
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 6.0e-210 734.6 576 62.3
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 7.8e-210 734.2 577 63.8
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 3.0e-209 732.3 605 60.8
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 5.1e-209 731.5 576 63.4
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 1.1e-208 730.3 576 63.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 5.6e-208 728.0 576 62.5
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 7.3e-208 727.6 578 63.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 7.3e-208 727.6 578 64.4
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 9.5e-208 727.2 578 63.5
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-207 726.9 576 62.2
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 4.7e-207 724.9 577 63.3
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 8.9e-206 720.7 576 63.9
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 5.8e-205 718.0 576 62.2
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 1.9e-203 713.0 576 62.5
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 4.2e-203 711.8 606 59.9
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 5.4e-203 711.4 576 62.2
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 1.2e-202 710.3 579 62.3
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 4.7e-199 698.4 576 61.6
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 1.4e-198 696.8 579 62.0
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 4.0e-198 695.3 578 61.1
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 5.3e-198 694.9 579 61.1
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 2.0e-197 693.0 577 60.8
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 3.4e-197 692.2 579 60.8
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.2e-194 683.7 498 69.7
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 3.6e-191 672.2 579 59.8
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 7.6e-189 664.5 533 63.6
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 2.2e-188 662.9 518 64.3
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 2.2e-188 662.9 648 54.6
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 2.2e-188 662.9 576 59.0
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 6.0e-186 654.8 580 57.8
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.8e-185 653.3 605 57.0
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 1.5e-181 640.2 578 57.1
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 1.5e-181 640.2 578 57.1
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 8.4e-180 634.4 576 55.4
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 4.2e-179 632.1 519 62.4
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 1.6e-178 630.2 578 57.3
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.1e-178 629.8 555 58.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 7.9e-178 627.9 556 56.7
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.0e-177 627.5 578 57.1
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.0e-177 627.5 578 57.1
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 7.4e-176 621.3 498 65.9
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 2.1e-175 619.8 681 49.9
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 3.4e-173 612.5 503 61.6
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 2.5e-168 596.3 429 69.7
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 7.4e-168 594.7 552 57.1
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 7.7e-165 584.7 440 65.7
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 8.5e-164 581.3 476 61.8
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.1e-158 564.3 393 74.6
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 5.9e-157 558.5 558 51.4
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.0e-156 557.8 387 70.3
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 3.9e-153 545.8 394 67.5
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 5.1e-153 545.4 433 64.0
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.8e-145 520.4 578 50.0
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.1e-144 517.7 472 58.3
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 1.9e-131 473.8 474 56.1
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 3.0e-129 466.5 467 52.0
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 1.0e-124 451.4 357 61.6
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.1e-123 448.0 610 41.5
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 2.2e-111 407.1 298 65.8
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 6.4e-111 405.6 602 40.4
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 6.6e-108 395.6 579 40.4
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 9.6e-75 285.4 245 58.8
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 6.9e-65 252.7 386 41.5
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 3.0e-60 237.3 208 60.1
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 5.1e-60 236.5 159 72.3
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.8e-57 228.0 528 31.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 9.0e-57 225.7 281 46.6
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 2.2e-34 151.4 621 24.5
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 4.8e-34 150.2 152 51.3
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 7.0e-33 146.4 99 66.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 1.6e-32 145.2 459 26.8
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 5.9e-32 143.3 218 40.8
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 5.0e-31 140.2 407 30.0
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 4.0e-28 130.6 129 49.6
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 1.1e-27 129.0 130 53.1
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 1.5e-27 128.6 74 75.7
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 6.5e-23 113.2 115 50.4
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 6.5e-23 113.2 115 50.4
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 6.5e-23 113.2 363 25.1
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.6e-21 108.6 73 75.3
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 6.8e-20 103.2 90 55.6
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 4.1e-17 94.0 79 58.2
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-17 94.0 68 66.2
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 1.0e-15 89.4 52 78.8
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.3e-15 89.0 79 57.0
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.9e-15 87.8 288 27.8
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 8.8e-12 76.3 45 77.8
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.4e-11 74.3 51 64.7
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 4.5e-08 63.9 70 48.6


User provided reference genes

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