Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.3e-255 885.9 459 100.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 1.8e-225 785.8 458 87.1
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 1.5e-219 766.1 455 84.8
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 3.6e-210 734.9 458 81.9
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 4.0e-209 731.5 458 81.7
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-207 726.5 458 81.7
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-207 726.5 470 79.4
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 2.2e-207 725.7 454 81.9
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.1e-206 723.4 458 81.9
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 9.3e-206 720.3 458 82.3
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 3.5e-205 718.4 461 80.5
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 1.8e-204 716.1 458 81.2
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 3.0e-204 715.3 455 81.1
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 4.8e-202 708.0 459 80.0
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 2.5e-198 695.7 459 78.2
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 4.2e-198 694.9 473 77.2
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 9.3e-198 693.7 455 78.7
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 9.3e-198 693.7 462 79.2
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 1.8e-196 689.5 411 83.5
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 3.0e-196 688.7 457 79.0
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.0e-196 688.7 449 78.2
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 5.1e-196 688.0 428 81.8
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 8.7e-196 687.2 455 78.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 1.9e-195 686.0 455 78.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 1.9e-195 686.0 455 78.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 1.6e-194 682.9 397 84.6
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.1e-194 682.6 425 80.7
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.7e-194 681.8 378 88.4
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 2.4e-193 679.1 389 85.3
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 3.1e-193 678.7 455 77.4
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 3.1e-193 678.7 435 79.5
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 5.3e-193 677.9 383 85.4
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 5.3e-193 677.9 459 77.6
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 1.2e-192 676.8 456 77.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 4.5e-192 674.9 457 76.4
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 7.6e-192 674.1 384 87.5
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 7.6e-192 674.1 393 83.7
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 1.0e-191 673.7 456 76.5
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 1.7e-191 672.9 457 75.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.7e-191 672.9 461 75.9
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.2e-191 672.5 427 79.2
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 2.2e-191 672.5 455 76.9
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 5.0e-191 671.4 452 76.1
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 8.5e-191 670.6 387 85.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.1e-190 670.2 456 75.9
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 1.1e-190 670.2 399 83.5
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.9e-190 669.5 461 75.5
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 4.2e-190 668.3 458 75.5
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 5.5e-190 667.9 459 76.5
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 5.5e-190 667.9 454 75.3
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 5.5e-190 667.9 459 77.1
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.3e-190 667.2 461 75.3
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 9.3e-190 667.2 463 75.2
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.2e-189 666.8 397 82.9
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 1.2e-189 666.8 455 76.3
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.6e-189 666.4 409 80.9
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 1.6e-189 666.4 460 75.9
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 2.7e-189 665.6 458 75.5
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 2.7e-189 665.6 396 82.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 3.6e-189 665.2 396 82.3
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 4.6e-189 664.8 443 76.5
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 6.1e-189 664.5 465 75.1
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 7.9e-189 664.1 459 74.5
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 1.3e-188 663.3 455 76.0
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.3e-188 663.3 506 69.8
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.0e-188 662.1 469 74.4
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 3.9e-188 661.8 466 74.7
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 3.9e-188 661.8 456 75.7
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.9e-188 661.8 430 78.1
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 5.1e-188 661.4 452 74.8
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 5.1e-188 661.4 452 74.8
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 5.1e-188 661.4 401 83.3
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 5.1e-188 661.4 487 73.5
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 6.7e-188 661.0 402 81.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 6.7e-188 661.0 462 74.9
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 1.1e-187 660.2 456 74.8
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 1.1e-187 660.2 458 75.8
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 1.9e-187 659.4 435 77.5
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 7.4e-187 657.5 456 74.8
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 9.7e-187 657.1 398 81.4
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 1.3e-186 656.8 464 73.5
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.3e-186 656.8 412 79.1
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 1.3e-186 656.8 463 74.5
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 1.6e-186 656.4 437 76.2
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 1.6e-186 656.4 459 73.9
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.8e-186 655.6 446 74.9
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 3.7e-186 655.2 380 83.2
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 3.7e-186 655.2 454 74.0
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 6.3e-186 654.4 434 77.4
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 8.2e-186 654.1 395 81.3
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 2.4e-185 652.5 448 74.6
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 2.4e-185 652.5 398 81.2
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 1.2e-184 650.2 442 75.1
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 3.4e-184 648.7 391 80.8
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.5e-184 648.3 378 84.4
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 2.2e-183 646.0 466 73.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 3.8e-183 645.2 385 81.3
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.5e-182 642.5 421 77.2
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 9.7e-179 630.6 437 74.8
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 8.5e-175 617.5 457 69.1
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 4.2e-174 615.1 457 68.9
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 1.4e-172 610.1 454 71.8
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 2.3e-172 609.4 464 67.5
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 4.4e-171 605.1 364 79.7
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 7.4e-171 604.4 385 74.5
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 1.1e-169 600.5 328 89.6
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.6e-165 586.6 465 66.2
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 5.9e-160 568.2 448 70.1
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 8.5e-159 564.3 383 72.1
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 8.5e-159 564.3 405 72.3
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 5.2e-156 555.1 371 74.1
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 5.9e-152 541.6 437 69.1
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.6e-149 533.5 287 89.9
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 1.2e-147 527.3 513 57.9
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.1e-145 519.2 287 85.0
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.3e-143 513.1 365 68.5
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 3.0e-140 502.7 394 62.4
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 7.5e-139 498.0 344 77.6
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.9e-135 485.7 374 68.7
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 9.5e-134 481.1 342 74.6
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 2.2e-130 469.9 374 61.2
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 7.1e-121 438.3 285 75.1
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 1.5e-118 430.6 233 88.8
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.3e-114 417.5 314 67.2
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.9e-111 406.0 450 53.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 1.6e-96 357.5 224 75.4
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 2.4e-89 333.6 256 66.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 5.5e-81 305.8 202 70.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 6.7e-79 298.9 299 49.2
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 6.3e-77 292.4 246 63.0
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 5.3e-76 289.3 273 58.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.4e-68 264.6 161 79.5
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 2.0e-67 260.8 355 42.8
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 6.7e-63 245.7 208 67.3
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 8.0e-56 222.2 367 40.1
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 2.6e-51 207.2 175 64.0
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 2.0e-46 191.0 184 59.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.2e-45 187.6 113 75.2
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 1.4e-31 141.7 129 64.3
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 1.4e-31 141.7 129 64.3
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.1e-28 130.2 83 69.9
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.1e-28 130.2 83 69.9
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 5.0e-26 123.2 77 74.0
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.0e-23 114.0 73 75.3
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 2.2e-21 107.8 112 51.8
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 3.7e-21 107.1 73 71.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 5.4e-20 103.2 69 66.7
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 7.3e-09 66.2 37 75.7
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 3.6e-08 63.9 126 42.9


User provided reference genes

Program Settings