Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1241100 Malus domestica HOM05D007707 ORTHO05D009711 3.8e-45 184.5 95 100.0
Prupe.7G172900 Prunus persica HOM05D007707 ORTHO05D009711 2.3e-34 148.7 97 81.4
Haze_03717 Corylus avellana HOM05D007707 ORTHO05D009711 1.5e-28 129.4 87 72.4
RcHm_v2.0_Chr2g0098761 Rosa chinensis HOM05D007707 ORTHO05D009711 1.2e-27 126.3 89 74.2
CiPaw.07G061600 Carya illinoinensis HOM05D007707 ORTHO05D009711 1.6e-27 125.9 83 73.5
Cfa007014 Carpinus fangiana HOM05D007707 ORTHO05D009711 2.7e-27 125.2 87 72.4
FAN19G0536 Fragaria x ananassa HOM05D007707 ORTHO05D009711 4.0e-26 121.3 89 71.9
FAN23G0755 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.0e-25 119.0 89 70.8
QL06p051322 Quercus lobata HOM05D007707 ORTHO05D009711 2.0e-25 119.0 86 68.6
TWI73G0967 Tripterygium wilfordii HOM05D007707 ORTHO05D009711 9.7e-25 116.7 83 68.7
Ciclev10026827m.g Citrus clementina HOM05D007707 ORTHO05D009711 1.4e-23 112.8 86 68.6
Manes.01G149600 Manihot esculenta HOM05D007707 ORTHO05D009711 2.4e-23 112.1 86 65.1
Thecc.01G013500 Theobroma cacao HOM05D007707 ORTHO05D009711 2.4e-23 112.1 92 64.1
Migut.J01748 Erythranthe guttata HOM05D007707 ORTHO05D009711 3.1e-23 111.7 89 61.8
Gohir.D11G180000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 4.1e-23 111.3 83 67.5
Gorai.007G191900 Gossypium raimondii HOM05D007707 ORTHO05D009711 4.1e-23 111.3 83 67.5
CANSAT01G1439 Cannabis sativa HOM05D007707 ORTHO05D009711 5.3e-23 110.9 69 78.3
Gohir.A11G173000 Gossypium hirsutum HOM05D007707 ORTHO05D009711 1.2e-22 109.8 83 66.3
FAN28G2511 Fragaria x ananassa HOM05D007707 ORTHO05D009711 2.0e-22 109.0 71 73.2
SGA_v2.0_scaffold36G14291 Striga asiatica HOM05D007707 ORTHO05D009711 3.5e-22 108.2 74 74.3
MELO3C007931.2 Cucumis melo HOM05D007707 ORTHO05D009711 4.5e-22 107.8 81 65.4
Duzib147G0406 Durio zibethinus HOM05D007707 ORTHO05D009711 4.5e-22 107.8 85 68.2
THA.LOC104804277 Tarenaya hassleriana HOM05D007707 ORTHO05D009711 5.9e-22 107.5 72 75.0
AL7G15140 Arabidopsis lyrata HOM05D007707 ORTHO05D009711 7.7e-22 107.1 71 73.2
Carub.0007s0432 Capsella rubella HOM05D007707 ORTHO05D009711 1.0e-21 106.7 71 74.6
A03p63940 Brassica napus HOM05D007707 ORTHO05D009711 1.3e-21 106.3 71 71.8
BraA03t15463Z Brassica rapa HOM05D007707 ORTHO05D009711 1.3e-21 106.3 71 71.8
AT4G35905 Arabidopsis thaliana HOM05D007707 ORTHO05D009711 1.7e-21 105.9 71 73.2
ClCG01G020510 Citrullus lanatus HOM05D007707 ORTHO05D009711 2.2e-21 105.5 81 63.0
CARHR244300 Cardamine hirsuta HOM05D007707 ORTHO05D009711 2.9e-21 105.1 75 70.7
Aa31LG6G12850 Aethionema arabicum HOM05D007707 ORTHO05D009711 3.8e-21 104.8 71 73.2
BolC7t46567H Brassica oleracea HOM05D007707 ORTHO05D009711 3.8e-21 104.8 71 71.8
Hma1.2p1_0869F.1_g230620 Hydrangea macrophylla HOM05D007707 ORTHO05D009711 3.8e-21 104.8 77 66.2
PGR102G1942 Punica granatum HOM05D007707 ORTHO05D009711 5.0e-21 104.4 69 73.9
CsaV3_6G047390 Cucumis sativus L. HOM05D007707 ORTHO05D009711 6.5e-21 104.0 81 63.0
Thhalv10026722m.g Eutrema salsugineum HOM05D007707 ORTHO05D009711 6.5e-21 104.0 69 73.9
Sp7g33690 Schrenkiella parvula HOM05D007707 ORTHO05D009711 8.5e-21 103.6 71 73.2
Cc07_g11150 Coffea canephora HOM05D007707 ORTHO05D009711 1.1e-20 103.2 72 66.7
COL.COLO4_22472 Corchorus olitorius HOM05D007707 ORTHO05D009711 1.1e-20 103.2 71 76.1
Nitab4.5_0001561g0120 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.1e-20 103.2 74 66.2
DCAR_011610 Daucus carota HOM05D007707 ORTHO05D009711 1.5e-20 102.8 84 64.3
Nitab4.5_0001685g0100 Nicotiana tabacum HOM05D007707 ORTHO05D009711 1.5e-20 102.8 85 60.0
vmacro22198 Vaccinium macrocarpon HOM05D007707 ORTHO05D009711 1.9e-20 102.4 86 61.6
Oeu056393.1 Olea europaea HOM05D007707 ORTHO05D009711 2.5e-20 102.1 82 59.8
Dinv08562 Davidia involucrata HOM05D007707 ORTHO05D009711 5.5e-20 100.9 91 62.6
Phvul.002G105900 Phaseolus vulgaris HOM05D007707 ORTHO05D009711 5.5e-20 100.9 78 64.1
Rhsim10G0207600 Rhododendron simsii HOM05D007707 ORTHO05D009711 7.2e-20 100.5 93 58.1
Ah.02g123290 Amaranthus hybridus HOM05D007707 ORTHO05D009711 9.4e-20 100.1 83 61.4
MBI08_g05062_MAGBIO Magnolia biondii HOM05D007707 ORTHO05D009711 1.2e-19 99.8 96 58.3
CAN.G354.55 Capsicum annuum HOM05D007707 ORTHO05D009711 1.6e-19 99.4 93 57.0
Sed0012149 Sechium edule HOM05D007707 ORTHO05D009711 2.1e-19 99.0 76 68.4
AUR62018017 Chenopodium quinoa HOM05D007707 ORTHO05D009711 2.7e-19 98.6 84 60.7
Glyma.01G163700 Glycine max HOM05D007707 ORTHO05D009711 8.0e-19 97.1 77 63.6
EL10Ac6g15163 Beta vulgaris HOM05D007707 ORTHO05D009711 1.8e-18 95.9 84 60.7
Peaxi162Scf00635g00914 Petunia axillaris HOM05D007707 ORTHO05D009711 1.8e-18 95.9 89 58.4
Sopen03g006140 Solanum pennellii HOM05D007707 ORTHO05D009711 1.8e-18 95.9 72 68.1
Glyma.11G079800 Glycine max HOM05D007707 ORTHO05D009711 2.3e-18 95.5 82 57.3
Lalb_Chr09g0321541 Lupinus albus HOM05D007707 ORTHO05D009711 2.3e-18 95.5 84 59.5
Sabra15G0015600 Salix brachista HOM05D007707 ORTHO05D009711 2.3e-18 95.5 70 67.1
Solyc03g033370.3 Solanum lycopersicum HOM05D007707 ORTHO05D009711 2.3e-18 95.5 72 66.7
Nn6g31960 Nelumbo nucifera HOM05D007707 ORTHO05D009711 4.0e-18 94.7 93 55.9
ECA246G5216 Erigeron canadensis HOM05D007707 ORTHO05D009711 9.8e-17 90.1 73 61.6
Lsat_1_v5_gn_3_71080 Lactuca sativa HOM05D007707 ORTHO05D009711 2.2e-16 89.0 54 77.8
Sc16g0001900 Simmondsia chinensis HOM05D007707 ORTHO05D009711 2.2e-16 89.0 85 56.5
Os10g0438700 Oryza sativa ssp. japonica HOM05D007707 ORTHO05D009711 2.8e-16 88.6 74 60.8
Lj2g0020635 Lotus japonicus HOM05D007707 ORTHO05D009711 3.7e-16 88.2 83 54.2
Actinidia22948 Actinidia chinensis HOM05D007707 ORTHO05D009711 4.8e-16 87.8 56 76.8
Medtr5g022760 Medicago truncatula HOM05D007707 ORTHO05D009711 6.3e-16 87.4 78 56.4
Zm00001eb222710 Zea mays HOM05D007707 ORTHO05D009711 6.3e-16 87.4 84 52.4
CDE05G2854 Ceratophyllum demersum HOM05D007707 ORTHO05D009711 1.8e-15 85.9 82 58.5
Psat2g152640 Pisum sativum HOM05D007707 ORTHO05D009711 2.4e-15 85.5 84 54.8
BcaNung05054 Brassica carinata HOM05D007707 ORTHO05D009711 3.1e-15 85.1 72 62.5
FvH4_1g11290 Fragaria vesca HOM05D007707 ORTHO05D009711 4.1e-15 84.7 60 66.7
TPR.G10525 Trifolium pratense HOM05D007707 ORTHO05D009711 4.1e-15 84.7 93 49.5
arahy.Tifrunner.gnm1.ann1.LEB2TA Arachis hypogaea HOM05D007707 ORTHO05D009711 1.6e-14 82.8 72 56.9
arahy.Tifrunner.gnm1.ann1.URRP40 Arachis hypogaea HOM05D007707 ORTHO05D009711 1.6e-14 82.8 72 56.9
ATR0180G024 Amborella trichopoda HOM05D007707 ORTHO05D009711 1.3e-13 79.7 66 54.5
Eucgr.J02480 Eucalyptus grandis HOM05D007707 ORTHO05D009711 1.7e-13 79.3 58 67.2
Pp3c14_18830 Physcomitrium patens HOM05D007707 ORTHO05D009711 2.9e-13 78.6 85 45.9
GSVIVG01006523001 Vitis vinifera HOM05D007707 ORTHO05D009711 6.5e-13 77.4 53 69.8
arahy.Tifrunner.gnm1.ann1.04LXIS Arachis hypogaea HOM05D000001 ORTHO05D009700 3.2e-12 75.1 57 63.2
Hund14067 Selenicereus undatus HOM05D007707 ORTHO05D009711 3.2e-12 75.1 54 63.0
SEGI_22054 Sequoiadendron giganteum HOM05D007707 ORTHO05D009711 1.2e-11 73.2 76 48.7
Mapoly0124s0029 Marchantia polymorpha HOM05D007707 ORTHO05D009711 1.0e-10 70.1 69 50.7
PGSC0003DMG400022552 Solanum tuberosum HOM05D007707 ORTHO05D009711 1.4e-10 69.7 52 69.2
HPP92_020736 Vanilla planifolia HOM05D007707 ORTHO05D009711 2.6e-09 65.5 52 65.4
SalBow2G3201 Salvia bowleyana HOM05D007707 ORTHO05D009711 7.5e-09 63.9 50 56.0
HanXRQChr09g0245181 Helianthus annuus HOM05D007707 ORTHO05D009711 1.7e-08 62.8 60 55.0
C07p61410 Brassica napus HOM05D007707 ORTHO05D009711 4.9e-08 61.2 36 77.8
Oeu060284.1 Olea europaea HOM05D007707 ORTHO05D009711 1.4e-07 59.7 85 44.7
CSS0044701 Camellia sinensis var. sinensis HOM05D007707 ORTHO05D009711 3.1e-07 58.5 40 65.0
Prupe.7G173100 Prunus persica HOM05D007707 ORTHO05D009711 4.1e-07 58.2 50 62.0


User provided reference genes

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