Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1236900 Malus domestica HOM05D005999 ORTHO05D003360 1.6e-162 576.6 429 100.0
Prupe.7G175600 Prunus persica HOM05D005999 ORTHO05D003360 1.8e-126 456.8 432 81.0
RcHm_v2.0_Chr2g0098251 Rosa chinensis HOM05D005999 ORTHO05D003360 8.1e-103 378.3 422 79.9
FAN19G2768 Fragaria x ananassa HOM05D005999 ORTHO05D003360 7.8e-98 361.7 281 68.7
FvH4_1g10990 Fragaria vesca HOM05D005999 ORTHO05D003360 2.3e-89 333.6 281 64.4
FAN23G1568 Fragaria x ananassa HOM05D005999 ORTHO05D003360 1.5e-88 330.9 420 75.2
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 1.6e-87 327.4 300 60.3
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 5.3e-86 322.4 282 61.0
Eucgr.I02298 Eucalyptus grandis HOM05D005999 ORTHO05D003360 9.0e-86 321.6 270 63.7
MELO3C007947.2 Cucumis melo HOM05D005999 ORTHO05D003360 5.8e-85 318.9 286 59.1
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 5.8e-85 318.9 300 59.3
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.7e-84 317.4 281 60.5
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 2.2e-84 317.0 289 58.1
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 6.5e-84 315.5 281 60.5
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 1.1e-83 314.7 295 58.6
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 1.4e-83 314.3 277 59.9
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 9.3e-83 311.6 296 57.4
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 6.0e-82 308.9 299 58.9
Potri.007G060400 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.8e-81 307.4 288 58.0
Sabra05G0086500 Salix brachista HOM05D005999 ORTHO05D003360 2.3e-81 307.0 289 57.1
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 8.7e-81 305.1 280 58.6
Potri.005G105800 Populus trichocarpa HOM05D005999 ORTHO05D003360 1.1e-80 304.7 289 56.4
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 9.6e-80 301.6 291 56.4
Haze_03698 Corylus avellana HOM05D005999 ORTHO05D003360 1.3e-79 301.2 286 59.4
Cfa007034 Carpinus fangiana HOM05D005999 ORTHO05D003360 3.7e-79 299.7 287 59.2
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 1.0e-76 291.6 276 58.0
CiPaw.08G125500 Carya illinoinensis HOM05D005999 ORTHO05D003360 1.3e-76 291.2 281 60.1
TAR628G0133 Trochodendron aralioides HOM05D005999 ORTHO05D003360 1.6e-74 284.3 291 60.1
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 7.9e-74 282.0 269 53.9
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 7.9e-74 282.0 289 57.1
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.3e-73 281.2 277 55.2
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.3e-73 281.2 277 55.2
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 3.9e-73 279.6 279 55.2
Ca_24948_v3 Cicer arietinum L. HOM05D005999 ORTHO05D003360 5.1e-73 279.3 289 55.7
Dinv08545 Davidia involucrata HOM05D005999 ORTHO05D003360 5.1e-73 279.3 312 51.0
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 3.3e-72 276.6 281 53.0
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 4.3e-72 276.2 259 55.2
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 5.7e-72 275.8 277 53.4
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 5.7e-72 275.8 304 53.3
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 5.7e-72 275.8 274 54.0
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 9.7e-72 275.0 288 52.4
QL06p052235 Quercus lobata HOM05D005999 ORTHO05D003360 9.7e-72 275.0 265 56.6
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 1.3e-71 274.6 276 55.1
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 1.3e-71 274.6 294 56.1
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 3.7e-71 273.1 284 52.8
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 3.7e-71 273.1 277 52.3
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 3.7e-71 273.1 289 51.2
Hma1.2p1_0315F.1_g122640 Hydrangea macrophylla HOM05D005999 ORTHO05D003360 6.3e-71 272.3 232 59.1
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 1.4e-70 271.2 278 52.5
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 1.8e-70 270.8 274 53.3
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 4.1e-70 269.6 299 51.8
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 4.1e-70 269.6 299 51.8
Glyma.01G161900 Glycine max HOM05D005999 ORTHO05D003360 4.1e-70 269.6 302 53.6
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 6.9e-70 268.9 297 51.9
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 2.0e-69 267.3 280 52.9
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 2.6e-69 266.9 275 53.5
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 7.7e-69 265.4 298 54.0
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 4.2e-67 259.6 286 52.4
CSS0001074 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 2.1e-66 257.3 232 58.6
CSS0035556 Camellia sinensis var. sinensis HOM05D005999 ORTHO05D003360 2.7e-66 256.9 300 52.0
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 3.9e-65 253.1 301 51.8
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 1.5e-64 251.1 285 49.8
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 5.7e-64 249.2 283 53.4
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 1.3e-63 248.1 289 47.8
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 1.3e-63 248.1 298 51.0
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 3.7e-63 246.5 310 47.1
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 3.7e-63 246.5 284 53.9
Actinidia28736 Actinidia chinensis HOM05D005999 ORTHO05D003360 6.3e-63 245.7 292 50.0
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 2.6e-61 240.4 264 51.9
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 4.5e-61 239.6 292 49.0
HanXRQChr09g0257041 Helianthus annuus HOM05D005999 ORTHO05D003360 7.7e-61 238.8 236 51.7
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 1.3e-60 238.0 280 49.6
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 3.8e-60 236.5 265 50.9
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 1.1e-59 235.0 266 49.2
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 1.1e-59 235.0 306 48.0
EL10Ac6g13337 Beta vulgaris HOM05D005999 ORTHO05D003360 2.5e-59 233.8 296 44.3
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 4.2e-59 233.0 255 51.0
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 5.5e-59 232.6 303 48.2
MSTRG.3620 Avicennia marina HOM05D005999 ORTHO05D003360 9.4e-59 231.9 303 46.5
CDE05G3499 Ceratophyllum demersum HOM05D005999 ORTHO05D003360 1.2e-58 231.5 239 54.0
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 1.6e-58 231.1 241 49.8
SGA_v2.0_scaffold58G20568 Striga asiatica HOM05D005999 ORTHO05D003360 6.1e-58 229.2 297 46.5
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 7.9e-58 228.8 310 43.9
CAN.G865.12 Capsicum annuum HOM05D005999 ORTHO05D003360 1.8e-57 227.6 305 46.6
vmacro18444 Vaccinium macrocarpon HOM05D005999 ORTHO05D003360 3.9e-57 226.5 292 45.9
Aqoxy5G01092 Aquilegia oxysepala HOM05D005999 ORTHO05D002169 8.8e-57 225.3 308 45.8
Hund16623 Selenicereus undatus HOM05D005999 ORTHO05D003360 1.7e-55 221.1 307 44.0
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.8e-55 219.5 306 44.1
DCAR_011582 Daucus carota HOM05D005999 ORTHO05D003360 1.8e-54 217.6 280 47.1
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 1.2e-53 214.9 310 45.2
Ah.02g129080 Amaranthus hybridus HOM05D005999 ORTHO05D003360 1.1e-51 208.4 293 45.1
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 2.5e-51 207.2 340 42.9
Rhsim08G0029800 Rhododendron simsii HOM05D005999 ORTHO05D003360 2.5e-51 207.2 326 42.3
HPP92_001740 Vanilla planifolia HOM05D005999 ORTHO05D003360 8.8e-49 198.7 238 47.1
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 4.4e-48 196.4 162 62.3
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 4.8e-47 193.0 270 46.7
ATR0661G352 Amborella trichopoda HOM05D005999 ORTHO05D003360 1.8e-46 191.0 330 37.9
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.0e-41 173.7 301 40.9
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 1.2e-40 171.8 298 41.6
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.3e-39 168.3 276 39.9
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 2.2e-39 167.5 308 39.6
Zm00001eb002820 Zea mays HOM05D005999 ORTHO05D003360 2.8e-39 167.2 292 39.7
Cpa.g.sc6.318 Carica papaya HOM05D005999 ORTHO05D003360 4.5e-37 159.8 173 54.9
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 4.7e-34 149.8 163 48.5
Cpa.g.sc6.319 Carica papaya HOM05D005999 ORTHO05D003360 5.2e-33 146.4 89 78.7
PSO017G5004 Papaver somniferum HOM05D005999 ORTHO05D003360 1.9e-27 127.9 250 38.0
AUR62026380 Chenopodium quinoa HOM05D005999 ORTHO05D003360 2.5e-27 127.5 92 65.2
AUR62026216 Chenopodium quinoa HOM05D005999 ORTHO05D003360 9.5e-27 125.6 89 66.3
Peaxi162Scf00439g00012 Petunia axillaris HOM05D005999 ORTHO05D003360 1.0e-25 122.1 178 45.5
SalBow3G2044 Salvia bowleyana HOM05D005999 ORTHO05D003360 3.9e-20 103.6 128 43.0
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.4e-17 95.1 152 38.2
SalBow6G2335 Salvia bowleyana HOM05D002275 ORTHO05D003360 6.8e-17 92.8 128 39.1
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 2.0e-16 91.3 65 75.4
SalBow6G0049 Salvia bowleyana HOM05D005999 ORTHO05D003360 4.4e-16 90.1 128 39.1
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 7.0e-14 82.8 73 57.5
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 9.2e-14 82.4 56 69.6
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 1.6e-13 81.6 55 70.9
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 1.5e-11 75.1 48 72.9
Pp3c8_14440 Physcomitrium patens HOM05D005999 ORTHO05D003360 3.6e-10 70.5 316 26.6
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 6.2e-10 69.7 44 70.5
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 1.5e-08 65.1 40 70.0
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 6.4e-07 59.7 48 64.6
Mapoly0070s0021 Marchantia polymorpha HOM05D005999 ORTHO05D003360 5.4e-06 56.6 270 27.0


User provided reference genes

Program Settings