Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 9.6e-95 350.1 175 100.0
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 3.5e-68 261.9 165 83.0
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 1.5e-66 256.5 163 77.3
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.8e-64 249.6 163 76.1
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.7e-59 233.0 163 73.6
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-57 226.5 163 72.4
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 6.1e-57 224.6 163 72.4
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.1e-57 224.6 163 72.4
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 6.1e-57 224.6 163 72.4
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.4e-56 223.4 163 71.2
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 9.8e-47 190.7 163 62.0
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 9.8e-47 190.7 164 61.0
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 4.9e-46 188.3 164 62.2
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 8.3e-46 187.6 140 67.9
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 1.1e-45 187.2 164 58.5
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 7.0e-45 184.5 163 58.9
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 2.7e-44 182.6 161 62.7
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 3.5e-44 182.2 163 60.7
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.7e-43 179.9 163 59.5
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 1.7e-43 179.9 163 60.7
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 2.3e-43 179.5 165 58.8
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 3.8e-43 178.7 118 75.4
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 4.2e-42 175.3 163 55.2
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 7.2e-42 174.5 139 65.5
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 9.5e-42 174.1 167 56.3
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.6e-41 173.3 165 55.8
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 2.1e-41 172.9 123 73.2
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 2.1e-41 172.9 164 59.8
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 6.1e-41 171.4 118 75.4
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 8.0e-41 171.0 110 76.4
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.8e-40 169.9 166 59.6
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.8e-40 169.9 145 64.8
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.8e-40 169.9 165 56.4
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.3e-40 169.5 99 81.8
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 5.2e-40 168.3 109 77.1
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 5.2e-40 168.3 103 77.7
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 6.8e-40 167.9 117 73.5
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 8.9e-40 167.5 162 57.4
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 1.5e-39 166.8 109 76.1
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 2.0e-39 166.4 166 58.4
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 4.4e-39 165.2 112 73.2
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 2.2e-38 162.9 135 65.9
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 2.9e-38 162.5 111 71.2
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 3.7e-38 162.2 164 56.1
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 6.4e-38 161.4 95 81.1
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 8.3e-38 161.0 144 60.4
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.4e-37 160.2 107 73.8
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.8e-37 159.8 115 70.4
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.8e-37 159.8 115 70.4
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 2.4e-37 159.5 101 74.3
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 2.4e-37 159.5 118 67.8
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 7.0e-37 157.9 96 78.1
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 7.0e-37 157.9 153 56.2
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 7.0e-37 157.9 112 70.5
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 9.2e-37 157.5 166 54.8
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.6e-36 156.8 118 66.1
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 3.5e-36 155.6 133 59.4
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 4.6e-36 155.2 125 65.6
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 4.6e-36 155.2 157 58.0
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 5.9e-36 154.8 113 71.7
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 5.9e-36 154.8 113 71.7
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 7.8e-36 154.5 117 65.8
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 7.8e-36 154.5 166 54.8
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.0e-35 154.1 113 71.7
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.0e-35 154.1 113 71.7
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 1.7e-35 153.3 170 54.1
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 1.7e-35 153.3 118 64.4
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 2.9e-35 152.5 120 66.7
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 3.9e-35 152.1 128 60.9
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 5.0e-35 151.8 158 57.6
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 5.0e-35 151.8 158 57.6
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 6.6e-35 151.4 113 69.9
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.1e-34 150.6 169 54.4
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 1.5e-34 150.2 115 68.7
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 1.5e-34 150.2 110 70.9
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 1.5e-34 150.2 87 83.9
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.9e-34 149.8 164 53.0
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.5e-34 149.4 138 60.1
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 2.5e-34 149.4 162 52.5
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 4.3e-34 148.7 110 69.1
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 4.3e-34 148.7 124 62.9
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 5.6e-34 148.3 128 59.4
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 5.6e-34 148.3 115 66.1
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.6e-34 148.3 109 67.9
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.6e-34 148.3 109 67.9
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 7.3e-34 147.9 93 75.3
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 1.6e-33 146.7 111 65.8
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 2.1e-33 146.4 112 65.2
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 2.8e-33 146.0 113 69.9
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.6e-33 145.6 81 84.0
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 4.7e-33 145.2 107 67.3
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 8.0e-33 144.4 125 60.8
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 8.0e-33 144.4 147 55.8
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 4.0e-32 142.1 108 67.6
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 8.9e-32 141.0 116 62.9
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 8.9e-32 141.0 116 62.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.6e-31 139.4 119 63.0
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 7.5e-31 137.9 125 60.0
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 7.5e-31 137.9 89 74.2
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 2.2e-30 136.3 95 70.5
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 4.9e-30 135.2 115 62.6
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.9e-29 133.3 91 74.7
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 9.2e-29 131.0 117 60.7
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 9.2e-29 131.0 105 66.7
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 1.2e-28 130.6 114 59.6
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 1.6e-28 130.2 111 63.1
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 1.6e-28 130.2 111 63.1
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 1.7e-27 126.7 113 62.8
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 3.9e-27 125.6 110 57.3
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 6.6e-27 124.8 109 58.7
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.9e-26 123.2 104 63.5
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 2.6e-23 112.8 107 55.1
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 6.4e-22 108.2 86 61.6
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.9e-21 106.7 113 51.3
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 4.1e-21 105.5 64 73.4
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 3.5e-20 102.4 97 54.6
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 4.6e-20 102.1 99 47.5
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 7.3e-18 94.7 117 43.6
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 2.1e-17 93.2 74 63.5
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.3e-14 84.0 51 76.5
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 1.9e-10 70.1 110 39.1
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 3.6e-09 65.9 38 71.1
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 4.0e-08 62.4 72 45.8


User provided reference genes

Program Settings