Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 8.0e-269 929.9 475 100.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 5.6e-246 854.0 475 92.2
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 6.6e-223 777.3 475 83.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 4.8e-205 718.0 475 75.6
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 1.8e-199 699.5 475 74.3
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.5e-198 696.4 472 74.4
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 3.3e-198 695.3 464 75.0
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 7.4e-198 694.1 464 75.0
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.6e-197 693.0 475 73.9
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.5e-193 677.9 465 72.9
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 3.9e-191 671.8 464 72.8
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.6e-187 659.1 464 69.4
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 8.5e-186 654.1 463 70.6
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 7.2e-185 651.0 463 69.5
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 9.4e-185 650.6 464 68.3
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 6.1e-184 647.9 441 73.0
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.5e-182 643.3 441 72.6
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 4.8e-181 638.3 464 69.6
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 6.5e-178 627.9 515 63.3
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 8.5e-178 627.5 464 67.0
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 1.4e-177 626.7 457 67.6
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 2.1e-176 622.9 465 66.7
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 6.1e-176 621.3 465 68.0
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.8e-175 619.8 465 66.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.9e-175 618.6 466 66.5
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 8.8e-175 617.5 467 65.7
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 4.8e-173 611.7 467 64.9
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.1e-172 610.5 464 67.0
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 2.6e-171 605.9 464 66.2
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 2.9e-170 602.4 460 65.4
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 3.8e-170 602.1 467 63.6
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 5.0e-170 601.7 473 64.3
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 6.5e-170 601.3 464 64.9
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 7.2e-169 597.8 464 64.4
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.6e-168 596.7 463 63.7
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 1.6e-168 596.7 463 63.7
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 3.6e-168 595.5 463 63.5
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 3.0e-167 592.4 461 63.6
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.0e-167 592.0 461 63.3
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.2e-167 591.7 464 64.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 4.8e-165 585.1 467 60.6
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 5.3e-164 581.6 473 61.7
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 5.3e-164 581.6 472 62.3
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.6e-163 580.1 462 63.4
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 2.9e-162 575.9 467 63.4
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 5.0e-162 575.1 464 58.8
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 8.5e-162 574.3 465 61.3
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.1e-161 573.9 464 61.9
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 9.4e-161 570.9 466 61.4
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 9.4e-161 570.9 464 63.4
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 1.2e-160 570.5 457 61.3
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 3.0e-159 565.8 467 62.7
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.5e-158 563.5 466 60.3
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 3.4e-158 562.4 465 60.6
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.3e-157 560.5 465 59.6
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.3e-157 560.5 465 60.2
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 8.3e-157 557.8 466 59.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.4e-156 557.0 466 59.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 2.7e-155 552.7 452 59.3
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 4.5e-155 552.0 465 61.5
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 1.3e-154 550.4 466 58.8
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 2.2e-154 549.7 467 59.5
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 1.9e-153 546.6 467 59.1
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 1.9e-153 546.6 492 57.3
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 3.2e-153 545.8 467 59.1
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 4.2e-153 545.4 468 59.2
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 5.5e-153 545.0 464 59.3
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 9.5e-153 544.3 457 60.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 1.2e-152 543.9 465 58.5
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.6e-152 543.5 467 58.5
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.1e-152 543.1 467 58.7
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 6.1e-152 541.6 464 59.1
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.8e-151 540.0 448 59.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 4.0e-151 538.9 466 57.7
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 2.6e-150 536.2 458 57.4
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 4.4e-150 535.4 465 57.4
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 1.4e-148 530.4 464 57.1
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 3.8e-146 522.3 473 56.0
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 3.8e-146 522.3 465 56.6
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.8e-144 516.2 463 58.1
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 4.7e-144 515.4 457 57.3
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 6.1e-144 515.0 459 57.3
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 3.0e-143 512.7 463 56.4
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 2.0e-142 510.0 426 59.4
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.6e-142 509.6 463 55.9
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.7e-141 506.9 460 56.7
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 3.7e-141 505.8 437 59.5
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 6.4e-141 505.0 454 55.5
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 9.2e-140 501.1 466 53.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.3e-138 497.3 424 62.7
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.8e-135 486.9 465 53.5
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.9e-133 478.8 468 52.4
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 7.8e-131 471.5 468 52.4
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.1e-129 467.6 458 51.3
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.5e-129 466.5 467 50.1
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.2e-128 464.2 426 56.3
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 5.8e-126 455.3 469 51.8
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 4.9e-125 452.2 450 52.0
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.4e-124 449.9 469 51.0
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 9.2e-124 448.0 500 47.8
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.9e-122 442.6 457 49.5
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.1e-115 420.2 493 45.8
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.7e-114 417.2 459 46.0
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 2.4e-111 406.8 471 47.1
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 4.9e-101 372.5 426 44.1
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 4.3e-97 359.4 283 62.9
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 1.3e-96 357.8 365 51.0
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 1.3e-96 357.8 365 51.0
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 6.9e-95 352.1 302 57.0
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 1.1e-87 328.2 467 38.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 2.9e-85 320.1 472 42.2
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 3.5e-83 313.2 530 37.5
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.1e-81 308.1 495 36.4
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 1.5e-65 254.6 328 47.0
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 3.2e-60 236.9 484 32.2
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 4.2e-60 236.5 527 31.3
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 3.8e-53 213.4 137 78.1
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.1e-51 207.6 192 54.2
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 2.4e-47 194.1 363 32.8
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.6e-46 191.4 117 77.8
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 4.0e-42 176.8 162 52.5
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 1.5e-41 174.9 162 52.5
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.4e-41 173.3 367 34.3
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.6e-35 154.8 124 54.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.6e-35 154.8 124 54.0
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 4.0e-34 150.2 121 53.7
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 9.8e-33 145.6 432 28.0
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 4.9e-32 143.3 103 64.1
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 9.2e-31 139.0 230 37.4
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 2.3e-29 134.4 217 39.6
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 3.6e-27 127.1 457 24.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 6.8e-26 122.9 296 28.4
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 5.0e-21 106.7 124 45.2
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 3.2e-15 87.4 172 33.1
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 1.2e-11 75.5 88 43.2
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.1e-11 74.7 66 53.0
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 2.1e-11 74.7 88 43.2
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 3.1e-10 70.9 73 47.9
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 4.4e-09 67.0 38 73.7
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.9e-08 64.3 39 69.2


User provided reference genes

Program Settings