Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 1.0e-309 1065.8 520 100.0
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 1.8e-293 1011.9 520 95.0
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 8.4e-280 966.5 517 89.2
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.6e-278 962.2 522 87.7
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.5e-278 961.1 522 87.7
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.0e-278 960.3 522 87.7
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 5.1e-277 957.2 522 87.4
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 1.6e-270 935.6 521 85.8
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 1.2e-265 919.5 521 83.9
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 2.6e-265 918.3 521 84.5
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 2.2e-264 915.2 521 83.7
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 3.2e-263 911.4 521 83.3
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 2.7e-262 908.3 521 82.9
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 2.3e-261 905.2 515 84.3
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.0e-260 902.1 521 82.9
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 2.6e-260 901.7 544 80.0
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 4.4e-260 901.0 521 82.3
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 4.8e-259 897.5 519 82.9
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.4e-258 896.0 520 82.7
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 1.8e-258 895.6 521 82.5
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.4e-258 895.2 520 82.3
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 7.0e-258 893.6 464 92.2
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 1.2e-257 892.9 520 82.3
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 8.5e-256 886.7 519 81.3
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 1.4e-255 885.9 521 81.2
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 4.2e-255 884.4 522 81.6
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 7.2e-255 883.6 521 80.4
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 7.2e-255 883.6 515 82.1
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 7.2e-255 883.6 519 81.9
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 2.7e-254 881.7 516 82.6
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 3.6e-254 881.3 521 80.6
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 6.1e-254 880.6 522 80.7
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 6.1e-254 880.6 522 81.2
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 1.8e-253 879.0 522 81.4
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.8e-253 879.0 545 78.2
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 2.3e-253 878.6 522 81.4
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 6.7e-253 877.1 519 80.3
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 8.8e-253 876.7 517 80.9
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.1e-252 876.3 520 81.3
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 1.5e-252 875.9 521 80.6
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 2.0e-252 875.5 519 81.7
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 2.0e-252 875.5 519 79.4
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.6e-252 875.2 522 80.5
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 2.6e-252 875.2 519 81.5
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 5.7e-252 874.0 521 78.7
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 1.3e-251 872.8 522 80.8
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.3e-251 872.8 513 80.9
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.7e-251 871.3 521 79.8
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 8.2e-251 870.2 519 80.3
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 1.1e-250 869.8 521 79.3
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 1.8e-250 869.0 522 79.3
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 2.4e-250 868.6 519 79.8
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 2.4e-250 868.6 514 81.7
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 7.0e-250 867.1 522 78.9
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 1.6e-249 865.9 521 78.7
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 3.5e-249 864.8 521 78.7
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 1.7e-248 862.4 522 78.7
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 1.7e-248 862.4 522 78.7
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.9e-248 861.7 521 79.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 3.8e-248 861.3 521 79.1
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.0e-248 860.9 522 78.5
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 5.0e-248 860.9 521 78.9
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 1.1e-247 859.8 519 79.0
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 1.1e-247 859.8 519 79.0
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 1.1e-247 859.8 521 78.7
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 1.5e-247 859.4 522 78.2
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 1.5e-247 859.4 522 78.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 2.5e-247 858.6 519 79.6
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 5.5e-247 857.4 520 79.0
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 5.5e-247 857.4 521 78.5
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 5.5e-247 857.4 521 79.5
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 7.2e-247 857.1 522 78.2
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 2.7e-246 855.1 521 78.3
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 3.6e-246 854.7 518 79.2
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 6.1e-246 854.0 521 78.3
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-245 852.8 521 78.1
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 1.4e-245 852.8 521 78.1
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 2.3e-245 852.0 521 78.1
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.3e-245 852.0 522 78.7
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 8.8e-245 850.1 521 78.5
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 2.0e-244 849.0 521 78.3
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.0e-244 849.0 531 77.0
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 2.6e-244 848.6 523 78.0
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 3.4e-244 848.2 522 78.0
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 3.4e-244 848.2 521 78.5
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 7.5e-244 847.0 521 78.1
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 9.7e-244 846.7 554 74.4
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 6.3e-243 844.0 522 77.4
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.1e-242 843.2 521 76.8
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 2.4e-242 842.0 521 78.1
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 1.2e-241 839.7 518 77.8
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 2.0e-241 839.0 520 78.1
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 2.2e-240 835.5 521 78.3
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 2.9e-240 835.1 493 81.5
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 1.9e-239 832.4 518 77.2
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 1.9e-239 832.4 520 77.7
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 1.9e-239 832.4 523 77.2
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 9.4e-239 830.1 527 75.1
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 1.6e-238 829.3 465 85.4
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 4.7e-238 827.8 517 77.6
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 1.4e-237 826.2 523 76.9
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 8.8e-237 823.5 520 75.8
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 2.6e-236 822.0 525 76.0
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 5.4e-234 814.3 531 74.4
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 2.0e-233 812.4 520 75.2
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 2.7e-233 812.0 515 75.1
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 3.5e-233 811.6 521 75.8
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.3e-232 809.7 519 76.1
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 1.1e-231 806.6 520 74.4
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 2.5e-231 805.4 468 81.4
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 7.2e-231 803.9 521 75.6
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 2.1e-230 802.4 522 73.8
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 4.7e-230 801.2 521 75.0
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 6.1e-230 800.8 477 79.0
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 1.4e-229 799.7 467 82.2
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.5e-228 796.2 520 73.8
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 7.5e-228 793.9 554 71.3
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.5e-228 793.9 471 78.8
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 2.2e-227 792.3 514 74.9
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 4.1e-226 788.1 470 80.6
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 4.5e-225 784.6 491 77.4
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.1e-223 780.0 521 72.6
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 1.9e-223 779.2 517 72.3
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 3.3e-223 778.5 517 72.5
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 7.3e-223 777.3 521 72.2
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.6e-222 776.2 474 78.1
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 6.1e-222 774.2 517 72.1
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 1.0e-221 773.5 551 69.7
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.3e-221 772.3 562 69.6
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 7.5e-220 767.3 574 66.9
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 8.3e-219 763.8 521 72.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 3.2e-218 761.9 521 70.6
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 6.0e-217 757.7 521 70.2
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 4.7e-214 748.0 520 69.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 1.8e-213 746.1 521 71.0
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 9.8e-212 740.3 519 69.2
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.4e-205 719.9 521 68.9
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 2.3e-205 719.2 521 67.9
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 8.9e-205 717.2 540 66.3
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 1.2e-204 716.8 520 69.4
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 2.1e-201 706.1 378 88.4
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 1.0e-200 703.7 504 71.6
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 3.2e-186 655.6 384 82.6
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 1.0e-184 650.6 381 81.6
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 4.3e-183 645.2 560 61.1
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 7.3e-183 644.4 482 67.2
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 7.1e-178 627.9 477 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 5.1e-168 595.1 487 58.5
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 9.6e-167 590.9 447 62.2
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 3.9e-160 568.9 473 59.0
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 2.7e-153 546.2 462 58.7
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 5.7e-143 511.9 353 71.4
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 6.3e-134 481.9 294 78.9
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 2.1e-129 466.8 290 78.6
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.0e-128 462.6 266 79.7
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 4.8e-126 455.7 289 76.1
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 7.0e-125 451.8 293 73.7
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 9.1e-125 451.4 292 74.7
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 1.2e-103 381.3 244 75.8
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 4.4e-103 379.4 250 71.2
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.3e-82 310.1 204 73.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 6.9e-56 222.6 131 76.3
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 2.6e-55 220.7 474 32.3
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 1.3e-46 191.8 474 30.4
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 9.7e-42 175.6 203 48.3
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.7e-38 164.9 142 54.9
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 2.6e-34 151.0 109 67.0
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.8e-27 128.3 86 73.3
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 2.2e-22 111.3 60 93.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 3.0e-19 100.9 58 79.3
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 9.7e-18 95.9 144 45.8
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 3.7e-17 94.0 159 35.8
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.1e-13 82.4 171 36.8
TPR.G21382 Trifolium pratense HOM05D003954 ORTHO05D004627 4.1e-08 63.9 55 61.8


User provided reference genes

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