Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 2.3e-114 415.6 211 100.0
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 5.2e-111 404.4 211 96.7
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 4.9e-101 371.3 211 89.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.6e-91 339.7 208 85.6
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 1.1e-89 333.6 210 80.5
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.9e-89 332.8 210 81.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 4.3e-89 331.6 207 83.1
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 6.2e-88 327.8 209 80.4
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 3.1e-87 325.5 212 78.8
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 6.8e-87 324.3 213 79.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 7.6e-86 320.9 211 76.3
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 9.9e-86 320.5 208 76.9
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.3e-85 320.1 203 79.3
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.3e-85 320.1 201 81.1
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.9e-85 318.2 204 79.9
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.9e-85 318.2 207 79.7
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 4.9e-85 318.2 203 80.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.9e-85 318.2 211 77.3
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 8.3e-85 317.4 203 79.8
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.4e-84 316.6 203 79.8
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.4e-84 315.8 194 82.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.2e-84 315.5 203 79.8
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 5.4e-84 314.7 207 77.8
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 5.4e-84 314.7 203 78.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 5.4e-84 314.7 194 82.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 9.2e-84 313.9 194 81.4
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.2e-83 313.5 194 81.4
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.6e-83 313.2 192 81.8
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.6e-83 313.2 205 79.0
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.6e-83 313.2 209 76.6
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.6e-83 313.2 205 77.1
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.7e-83 312.4 209 78.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 2.7e-83 312.4 205 78.5
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.7e-83 312.4 208 78.8
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 3.5e-83 312.0 205 79.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.5e-83 312.0 208 78.8
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.6e-83 311.6 212 74.1
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 6.0e-83 311.2 208 78.8
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.8e-83 310.8 205 77.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 1.3e-82 310.1 208 78.4
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.3e-82 310.1 208 78.8
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 3.0e-82 308.9 209 78.0
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.1e-82 308.1 213 77.0
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 6.6e-82 307.8 198 79.8
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.1e-81 307.0 194 78.9
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.9e-81 306.2 212 76.4
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.9e-81 306.2 212 76.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.5e-81 305.8 189 79.9
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.5e-81 305.8 209 72.7
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.3e-81 305.4 210 74.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 9.6e-81 303.9 205 75.6
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.1e-80 302.8 214 73.4
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 3.6e-80 302.0 225 71.1
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 6.2e-80 301.2 203 74.9
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 6.2e-80 301.2 201 76.1
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 8.1e-80 300.8 199 78.4
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.1e-79 300.4 200 77.0
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-79 300.4 199 76.4
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 1.4e-79 300.1 200 76.5
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 1.4e-79 300.1 196 77.6
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.1e-79 298.9 205 75.6
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 1.5e-78 296.6 199 75.9
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.5e-78 296.6 199 75.9
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 2.0e-78 296.2 179 81.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.6e-78 295.8 211 73.9
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 4.4e-78 295.0 210 74.3
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.9e-78 293.9 201 73.1
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 2.2e-77 292.7 205 71.2
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-76 290.4 214 72.4
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 3.2e-76 288.9 198 73.7
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.2e-76 288.9 296 56.8
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.4e-76 288.1 205 70.7
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 5.4e-76 288.1 210 70.0
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 7.1e-76 287.7 198 74.2
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.6e-75 285.0 205 71.2
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 7.8e-75 284.3 181 77.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 1.0e-74 283.9 210 70.0
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.0e-74 283.9 211 71.1
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.0e-74 283.9 193 73.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.7e-74 283.1 210 70.0
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 5.1e-74 281.6 210 69.5
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.1e-74 281.6 199 73.4
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.5e-73 280.0 213 69.0
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.9e-73 279.6 161 85.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.5e-73 279.3 207 68.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 5.6e-73 278.1 205 69.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 7.3e-73 277.7 208 67.3
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.3e-73 277.7 200 71.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.6e-72 276.6 201 72.1
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 2.8e-72 275.8 208 69.2
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 4.8e-72 275.0 210 69.0
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.8e-72 275.0 216 67.6
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 6.2e-72 274.6 207 67.1
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 8.1e-72 274.2 207 68.6
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.1e-71 273.9 216 67.1
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 3.1e-71 272.3 207 67.1
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 4.0e-71 271.9 160 84.4
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 5.8e-70 268.1 199 67.8
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.6e-70 267.7 200 70.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 9.9e-70 267.3 207 68.1
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 4.9e-69 265.0 196 74.5
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.1e-68 263.8 198 67.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.9e-68 263.1 197 69.5
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 4.2e-68 261.9 200 66.5
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 4.2e-68 261.9 213 64.8
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 5.4e-68 261.5 175 75.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.2e-67 260.4 175 73.7
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.1e-67 259.6 193 69.4
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.1e-67 259.6 199 66.3
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.1e-67 259.6 196 73.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 2.7e-67 259.2 205 67.3
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 3.5e-67 258.8 210 66.7
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 3.5e-67 258.8 199 65.3
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.5e-67 258.8 207 64.7
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 8.7e-66 254.2 164 77.4
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 5.6e-65 251.5 166 77.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 2.8e-64 249.2 177 73.4
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.0e-63 245.4 159 79.9
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 2.6e-62 242.7 202 62.9
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.8e-62 241.5 200 65.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.8e-61 238.8 209 65.6
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.6e-59 231.9 207 62.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 8.7e-58 227.6 171 66.1
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 4.8e-56 221.9 126 86.5
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.4e-55 219.5 189 58.2
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.4e-54 215.7 123 87.0
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.3e-53 213.8 121 86.8
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.9e-49 199.9 168 66.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.5e-49 199.5 196 54.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.1e-48 196.4 185 59.5
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 5.3e-47 191.8 198 54.0
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.2e-46 190.7 196 57.1
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 3.8e-45 185.7 171 56.7
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 6.5e-45 184.9 150 60.0
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 1.4e-44 183.7 117 76.1
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 4.6e-43 178.7 103 85.4
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 3.0e-42 176.0 104 84.6
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 8.2e-40 167.9 96 82.3
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 8.2e-40 167.9 167 55.7
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 1.3e-37 160.6 173 49.7
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.5e-37 158.3 173 51.4
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 8.5e-37 157.9 149 53.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 2.4e-31 139.8 113 64.6
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 2.6e-22 109.8 103 62.1
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 4.2e-20 102.4 73 68.5
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.6e-19 100.5 73 67.1
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 6.1e-19 98.6 156 39.1
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.4e-18 97.4 209 36.4
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 3.0e-18 96.3 59 74.6
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 2.6e-17 93.2 66 66.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 1.8e-15 87.0 94 48.9
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.8e-15 87.0 183 32.2
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 9.4e-12 74.7 62 66.1
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.2e-10 68.9 56 62.5
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 2.6e-09 66.6 40 82.5
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 4.1e-07 59.3 38 71.1


User provided reference genes

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