Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1090900 Malus domestica HOM05D004583 ORTHO05D005469 2.1e-310 1068.1 537 100.0
MD08G1111400 Malus domestica HOM05D004583 ORTHO05D005469 2.5e-274 948.3 539 90.2
Prupe.1G445300 Prunus persica HOM05D004583 ORTHO05D005469 5.9e-260 900.6 543 84.0
FvH4_2g35320 Fragaria vesca HOM05D004583 ORTHO05D005469 2.0e-231 805.8 542 77.3
FAN20G1421 Fragaria x ananassa HOM05D004583 ORTHO05D005469 9.1e-229 797.0 542 76.2
RcHm_v2.0_Chr6g0306601 Rosa chinensis HOM05D004583 ORTHO05D005469 3.5e-228 795.0 543 76.1
FAN27G2572 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.2e-220 770.0 561 73.1
Potri.018G046700 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.3e-211 739.2 540 70.6
QL12p041048 Quercus lobata HOM05D004583 ORTHO05D005469 3.9e-211 738.4 548 71.5
Cfa013385 Carpinus fangiana HOM05D004583 ORTHO05D005469 1.2e-207 726.9 551 70.6
Sabra18G0045300 Salix brachista HOM05D004583 ORTHO05D005469 1.0e-203 713.8 558 67.9
CANSAT25G3668 Cannabis sativa HOM05D004583 ORTHO05D005469 2.5e-202 709.1 543 69.4
TWI63G0012 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 9.5e-202 707.2 549 67.8
Ciclev10007949m.g Citrus clementina HOM05D004583 ORTHO05D005469 1.1e-200 703.7 539 69.2
FAN15G2845 Fragaria x ananassa HOM05D004583 ORTHO05D005469 1.3e-198 696.8 542 69.7
Potri.006G236400 Populus trichocarpa HOM05D004583 ORTHO05D005469 2.9e-198 695.7 541 68.0
CiPaw.08G027000 Carya illinoinensis HOM05D004583 ORTHO05D005469 7.1e-197 691.0 555 67.7
Manes.16G073800 Manihot esculenta HOM05D004583 ORTHO05D005469 2.1e-196 689.5 538 66.7
GSVIVG01035292001 Vitis vinifera HOM05D004583 ORTHO05D005469 3.0e-195 685.6 551 67.0
CSS0042231 Camellia sinensis var. sinensis HOM05D004583 ORTHO05D005469 7.6e-191 671.0 546 65.4
Actinidia15745 Actinidia chinensis HOM05D004583 ORTHO05D005469 2.9e-190 669.1 552 63.9
TWI34G1497 Tripterygium wilfordii HOM05D004583 ORTHO05D005469 5.4e-189 664.8 548 65.1
Sc09g0009440 Simmondsia chinensis HOM05D004583 ORTHO05D005469 2.7e-188 662.5 542 64.2
ClCG08G012110 Citrullus lanatus HOM05D004583 ORTHO05D005469 7.8e-188 661.0 544 64.0
Sabra06G0184800 Salix brachista HOM05D004583 ORTHO05D005469 1.0e-187 660.6 532 65.0
Hma1.2p1_0049F.1_g028360 Hydrangea macrophylla HOM05D004583 ORTHO05D005469 1.1e-186 657.1 547 64.4
TAR636G0454 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.6e-185 653.3 547 62.9
Sed0024833 Sechium edule HOM05D004583 ORTHO05D005469 1.1e-184 650.6 544 63.1
Lsat_1_v5_gn_1_42160 Lactuca sativa HOM05D004583 ORTHO05D005469 3.1e-184 649.0 539 63.5
Nitab4.5_0001737g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 3.2e-181 639.0 547 62.7
Hund03382 Selenicereus undatus HOM05D004583 ORTHO05D005469 7.1e-181 637.9 555 61.8
Nn6g35316 Nelumbo nucifera HOM05D004583 ORTHO05D005469 1.2e-180 637.1 556 62.6
HanXRQChr11g0352321 Helianthus annuus HOM05D004583 ORTHO05D005469 2.1e-180 636.3 545 63.1
Nitab4.5_0001309g0070 Nicotiana tabacum HOM05D004583 ORTHO05D005469 7.9e-180 634.4 542 62.9
PGR031G0432 Punica granatum HOM05D004583 ORTHO05D005469 7.9e-180 634.4 559 61.4
Sopen12g031740 Solanum pennellii HOM05D004583 ORTHO05D005469 1.9e-178 629.8 539 61.6
Eucgr.C00611 Eucalyptus grandis HOM05D004583 ORTHO05D005469 3.3e-178 629.0 544 63.1
Solyc12g095840.2 Solanum lycopersicum HOM05D004583 ORTHO05D005469 4.3e-178 628.6 539 61.4
Thecc.09G047500 Theobroma cacao HOM05D004583 ORTHO05D005469 4.3e-178 628.6 537 62.0
Lalb_Chr22g0361041 Lupinus albus HOM05D004583 ORTHO05D005469 5.3e-176 621.7 548 60.4
CAN.G208.65 Capsicum annuum HOM05D004583 ORTHO05D005469 9.0e-176 620.9 514 62.6
Gohir.D07G025000 Gossypium hirsutum HOM05D004583 ORTHO05D005469 1.2e-175 620.5 537 62.0
Gohir.A07G022241 Gossypium hirsutum HOM05D004583 ORTHO05D005469 4.5e-175 618.6 534 62.0
arahy.Tifrunner.gnm1.ann1.R6LPAT Arachis hypogaea HOM05D004583 ORTHO05D005469 7.6e-175 617.8 548 61.9
Gorai.001G026100 Gossypium raimondii HOM05D004583 ORTHO05D005469 7.6e-175 617.8 537 61.5
Thhalv10001956m.g Eutrema salsugineum HOM05D004583 ORTHO05D005469 9.9e-175 617.5 553 59.7
C03p32470 Brassica napus HOM05D004583 ORTHO05D005469 1.1e-173 614.0 558 60.2
Cc08_g09870 Coffea canephora HOM05D004583 ORTHO05D005469 4.2e-173 612.1 544 62.5
Aa31LG5G9840 Aethionema arabicum HOM05D004583 ORTHO05D005469 7.1e-173 611.3 553 59.3
BolC3t15588H Brassica oleracea HOM05D004583 ORTHO05D005469 7.1e-173 611.3 558 59.9
Sp4g05420 Schrenkiella parvula HOM05D004583 ORTHO05D005469 9.3e-173 610.9 558 59.1
SHI18791 Sapria himalayana HOM05D004583 ORTHO05D005469 2.1e-172 609.8 548 60.8
Peaxi162Scf00064g01528 Petunia axillaris HOM05D004583 ORTHO05D005469 2.7e-172 609.4 539 59.6
A03p27060 Brassica napus HOM05D004583 ORTHO05D005469 3.5e-172 609.0 559 59.6
BraA03t11919Z Brassica rapa HOM05D004583 ORTHO05D005469 3.5e-172 609.0 559 59.6
PSO210G3632 Papaver somniferum HOM05D004583 ORTHO05D005469 3.5e-172 609.0 544 62.3
BcaB08g35216 Brassica carinata HOM05D004583 ORTHO05D005469 1.0e-171 607.4 563 59.3
DCAR_004462 Daucus carota HOM05D004583 ORTHO05D005469 1.3e-171 607.1 543 60.6
Rhsim02G0175400 Rhododendron simsii HOM05D004583 ORTHO05D005469 3.9e-171 605.5 546 59.9
CsaV3_2G030710 Cucumis sativus L. HOM05D004583 ORTHO05D005469 6.7e-171 604.7 546 60.1
Medtr1g007160 Medicago truncatula HOM05D004583 ORTHO05D005469 1.1e-170 604.0 549 61.9
MBI04_g20300_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 3.3e-170 602.4 538 60.0
ECA248G2390 Erigeron canadensis HOM05D004583 ORTHO05D005469 1.3e-169 600.5 544 58.6
TAR624G1263 Trochodendron aralioides HOM05D004583 ORTHO05D005469 1.6e-169 600.1 548 57.1
Psat6g035200 Pisum sativum HOM05D004583 ORTHO05D005469 2.8e-169 599.4 549 58.8
THA.LOC104803803 Tarenaya hassleriana HOM05D004583 ORTHO05D005469 1.4e-168 597.0 557 59.2
AT2G25740 Arabidopsis thaliana HOM05D004583 ORTHO05D005469 3.1e-168 595.9 562 58.4
AL4G17420 Arabidopsis lyrata HOM05D004583 ORTHO05D005469 6.9e-168 594.7 562 57.8
A09p55470 Brassica napus HOM05D004583 ORTHO05D005469 9.0e-168 594.3 554 58.5
Duzib168G1134 Durio zibethinus HOM05D004583 ORTHO05D005469 1.2e-167 594.0 539 60.3
BcaC07g40848 Brassica carinata HOM05D004583 ORTHO05D005469 2.6e-167 592.8 550 58.0
BolC8t51418H Brassica oleracea HOM05D004583 ORTHO05D005469 3.4e-167 592.4 549 58.1
Oeu038813.1 Olea europaea HOM05D004583 ORTHO05D005469 1.0e-166 590.9 553 58.8
Carub.0004s0553 Capsella rubella HOM05D004583 ORTHO05D005469 1.3e-166 590.5 562 56.4
Lj1g0018877 Lotus japonicus HOM05D004583 ORTHO05D005469 1.3e-166 590.5 546 58.4
TPR.G24505 Trifolium pratense HOM05D004583 ORTHO05D005469 2.2e-166 589.7 554 59.6
EL10Ac2g03985 Beta vulgaris HOM05D004583 ORTHO05D005469 1.1e-165 587.4 556 56.7
PSO210G2011 Papaver somniferum HOM05D004583 ORTHO05D005469 3.2e-165 585.9 539 60.9
AUR62009234 Chenopodium quinoa HOM05D004583 ORTHO05D005469 1.6e-164 583.6 563 56.1
VMungo1309G0941 Vigna mungo HOM05D004583 ORTHO05D005469 5.1e-163 578.6 548 57.8
Phvul.009G111600 Phaseolus vulgaris HOM05D004583 ORTHO05D005469 6.7e-163 578.2 547 57.8
Migut.E01537 Erythranthe guttata HOM05D004583 ORTHO05D005469 1.5e-162 577.0 539 56.8
Aqoxy7G03869 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.9e-162 576.6 558 56.1
MELO3C011128.2 Cucumis melo HOM05D004583 ORTHO05D005469 1.6e-161 573.5 618 53.4
Ca_15574_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 9.0e-160 567.8 517 59.0
AUR62041959 Chenopodium quinoa HOM05D004583 ORTHO05D005469 2.0e-159 566.6 607 52.2
Medtr3g110340 Medicago truncatula HOM05D004583 ORTHO05D005469 7.6e-159 564.7 521 58.5
ATR0705G143 Amborella trichopoda HOM05D004583 ORTHO05D005469 1.1e-157 560.8 571 55.3
C08p38460 Brassica napus HOM05D004583 ORTHO05D005469 4.2e-157 558.9 550 56.4
CANSAT35G1178 Cannabis sativa HOM05D004583 ORTHO05D005469 3.9e-155 552.4 549 56.3
AUR62041963 Chenopodium quinoa HOM05D004583 ORTHO05D005469 6.7e-155 551.6 573 53.9
CARHR115490 Cardamine hirsuta HOM05D004583 ORTHO05D005469 2.5e-154 549.7 500 57.6
Dinv23388 Davidia involucrata HOM05D004583 ORTHO05D005469 5.7e-154 548.5 477 63.9
TPR.G12398 Trifolium pratense HOM05D004583 ORTHO05D005469 3.1e-152 542.7 552 54.7
MSTRG.14029 Avicennia marina HOM05D004583 ORTHO05D005469 5.3e-152 542.0 545 54.5
Glyma.04G086400 Glycine max HOM05D004583 ORTHO05D005469 5.3e-152 542.0 465 61.1
Psat5g020600 Pisum sativum HOM05D004583 ORTHO05D005469 9.0e-152 541.2 487 58.9
COL.COLO4_20995 Corchorus olitorius HOM05D004583 ORTHO05D005469 2.0e-151 540.0 493 61.1
Lj7C698G10 Lonicera japonica HOM05D004583 ORTHO05D005469 2.0e-151 540.0 492 58.9
BraA09t40949Z Brassica rapa HOM05D004583 ORTHO05D005469 1.0e-150 537.7 517 57.8
SGA_v2.0_scaffold169G38659 Striga asiatica HOM05D004583 ORTHO05D005469 6.5e-150 535.0 575 51.5
arahy.Tifrunner.gnm1.ann1.6GB5J4 Arachis hypogaea HOM05D004583 ORTHO05D005469 1.1e-149 534.3 514 59.5
SalBow1G6079 Salvia bowleyana HOM05D004583 ORTHO05D005469 7.2e-149 531.6 604 49.5
unitig_32.g11475 Utricularia gibba HOM05D004583 ORTHO05D005469 3.6e-148 529.3 534 52.2
BcaC01g04904 Brassica carinata HOM05D004583 ORTHO05D005469 1.8e-147 526.9 555 53.9
arahy.Tifrunner.gnm1.ann1.AK4U3Y Arachis hypogaea HOM05D004583 ORTHO05D005469 8.8e-147 524.6 476 57.4
arahy.Tifrunner.gnm1.ann1.M0YYQ7 Arachis hypogaea HOM05D004583 ORTHO05D005469 7.4e-146 521.5 530 53.8
CiPaw.07G202200 Carya illinoinensis HOM05D004583 ORTHO05D005469 3.1e-144 516.2 458 64.0
MSTRG.1664 Avicennia marina HOM05D004583 ORTHO05D005469 3.8e-142 509.2 465 55.7
vmacro11048 Vaccinium macrocarpon HOM05D004583 ORTHO05D005469 5.0e-142 508.8 518 53.5
Os05g0521500 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 6.5e-142 508.4 553 51.4
Lalb_Chr23g0269711 Lupinus albus HOM05D004583 ORTHO05D005469 2.1e-140 503.4 489 54.2
Zm00001eb293710 Zea mays HOM05D004583 ORTHO05D005469 3.7e-137 492.7 563 49.9
Actinidia14686 Actinidia chinensis HOM05D004583 ORTHO05D005469 1.1e-136 491.1 559 51.7
Aqoxy7G01424 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.3e-129 467.6 545 50.6
HPP92_022971 Vanilla planifolia HOM05D004583 ORTHO05D005469 1.8e-123 447.2 448 55.4
Os01g0743600 Oryza sativa ssp. japonica HOM05D004583 ORTHO05D005469 5.7e-122 442.2 553 47.6
Mapoly0168s0005 Marchantia polymorpha HOM05D004583 ORTHO05D005469 1.3e-121 441.0 540 46.3
Rhsim02G0175600 Rhododendron simsii HOM05D004583 ORTHO05D005469 1.6e-116 424.1 464 54.3
DCAR_003076 Daucus carota HOM05D004583 ORTHO05D005469 2.7e-116 423.3 500 50.0
Haze_21911 Corylus avellana HOM05D004583 ORTHO05D005469 8.0e-116 421.8 324 69.4
Pp3c5_21890 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-113 414.5 587 43.3
Pp3c5_21897 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.3e-113 414.5 587 43.3
Pp3c6_5840 Physcomitrium patens HOM05D004583 ORTHO05D005469 7.7e-111 405.2 570 44.0
Pp3c9_19040 Physcomitrium patens HOM05D004583 ORTHO05D005469 5.6e-109 399.1 539 43.0
Pp3c15_22980 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.2e-108 397.9 542 43.7
SMO238G0017 Selaginella moellendorffii HOM05D004583 ORTHO05D005469 3.0e-107 393.3 502 46.2
Atru.chr7.2059 Acer truncatum HOM05D004583 ORTHO05D005469 2.5e-101 373.6 328 61.9
SEGI_02523 Sequoiadendron giganteum HOM05D004583 ORTHO05D005469 6.8e-99 365.5 428 52.3
Zm00001eb153580 Zea mays HOM05D004583 ORTHO05D005469 1.6e-95 354.4 552 40.6
CDE02G1982 Ceratophyllum demersum HOM05D004583 ORTHO05D001336 8.1e-92 342.0 357 51.8
CBR_g21950 Chara braunii HOM05D004583 ORTHO05D005469 1.0e-78 298.5 702 31.6
Pp3c27_6400 Physcomitrium patens HOM05D004583 ORTHO05D005469 8.1e-76 288.9 583 35.7
MBI04_g32315_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.3e-73 281.6 181 70.7
Cpa.g.sc7.206 Carica papaya HOM05D004583 ORTHO05D005469 2.9e-73 280.4 168 76.8
AagrBONN_evm.TU.Sc2ySwM_117.1952 Anthoceros agrestis HOM05D004583 ORTHO05D005469 6.4e-73 279.3 450 40.7
Ah.10g034890 Amaranthus hybridus HOM05D004583 ORTHO05D005469 6.0e-71 272.7 399 45.6
Pp3c16_16060 Physcomitrium patens HOM05D004583 ORTHO05D005469 1.5e-69 268.1 609 32.5
Atru.chr7.2058 Acer truncatum HOM05D004583 ORTHO05D005469 3.0e-54 217.2 185 65.4
Cpa.g.c37634 Carica papaya HOM05D004583 ORTHO05D005469 6.2e-52 209.5 258 50.0
Haze_21912 Corylus avellana HOM05D004583 ORTHO05D005469 1.4e-51 208.4 154 69.5
TPR.G9691 Trifolium pratense HOM05D004583 ORTHO05D005469 1.4e-48 198.4 193 50.8
Aqoxy6G01950 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 1.1e-43 182.2 278 45.3
CDE02G3504 Ceratophyllum demersum HOM05D004583 ORTHO05D005469 1.7e-41 174.9 153 61.4
Ca_19225_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 7.9e-39 166.0 165 57.0
MBI04_g42480_MAGBIO Magnolia biondii HOM05D004583 ORTHO05D005469 1.5e-37 161.8 145 62.1
Glyma.06G087900 Glycine max HOM05D004583 ORTHO05D005469 5.3e-35 153.3 122 59.0
Lj4g0027824 Lotus japonicus HOM05D004583 ORTHO05D005469 1.9e-32 144.8 136 59.6
Ca_12761_v3 Cicer arietinum L. HOM05D004583 ORTHO05D005469 1.6e-31 141.7 137 54.0
Aqoxy6G01951 Aquilegia oxysepala HOM05D004583 ORTHO05D005469 3.1e-27 127.5 94 66.0
PRCOL_00000859 Prasinoderma coloniale HOM05D004583 ORTHO05D005469 5.0e-25 120.2 180 37.2
MCO16G603 Micromonas commoda HOM05D004583 ORTHO05D005469 5.5e-24 116.7 170 36.5
HPP92_022972 Vanilla planifolia HOM05D004583 ORTHO05D005469 4.1e-19 100.5 96 56.2
TPR.G7872 Trifolium pratense HOM05D004583 ORTHO05D005469 1.0e-17 95.9 102 49.0
Duzib150G0365 Durio zibethinus HOM05D004583 ORTHO05D005469 6.5e-17 93.2 68 61.8
Cpa.g.c46051 Carica papaya HOM05D004583 ORTHO05D005469 2.0e-10 71.6 39 76.9
SEGI_19140 Sequoiadendron giganteum HOM05D004346 ORTHO05D005153 1.8e-06 58.5 142 29.6
arahy.Tifrunner.gnm1.ann1.E99XLH Arachis hypogaea HOM05D002152 ORTHO05D031610 3.0e-06 57.8 37 67.6


User provided reference genes

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