Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1047100 Malus domestica HOM05D005213 ORTHO05D006229 2.2e-230 802.0 413 100.0
MD08G1046900 Malus domestica HOM05D005213 ORTHO05D006229 7.1e-181 637.5 424 81.6
Prupe.1G401300 Prunus persica HOM05D005213 ORTHO05D006229 8.8e-147 524.2 426 72.5
RcHm_v2.0_Chr6g0304741 Rosa chinensis HOM05D005213 ORTHO05D006229 3.6e-124 449.1 432 64.8
FAN15G1397 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.7e-121 440.3 432 64.4
FvH4_2g37040 Fragaria vesca HOM05D005213 ORTHO05D006229 2.2e-121 439.9 433 64.4
FAN20G0215 Fragaria x ananassa HOM05D005213 ORTHO05D006229 1.6e-119 433.7 432 63.0
FAN27G3126 Fragaria x ananassa HOM05D005213 ORTHO05D006229 3.5e-119 432.6 433 64.0
TAR624G0676 Trochodendron aralioides HOM05D005213 ORTHO05D006229 8.0e-116 421.4 413 60.5
Gorai.009G039700 Gossypium raimondii HOM05D005213 ORTHO05D006229 2.7e-111 406.4 431 58.9
Cpa.g.sc82.19 Carica papaya HOM05D005213 ORTHO05D006229 3.0e-110 402.9 423 59.1
CiPaw.16G068600 Carya illinoinensis HOM05D005213 ORTHO05D006229 3.0e-110 402.9 426 58.5
Thecc.09G066400 Theobroma cacao HOM05D005213 ORTHO05D006229 1.9e-109 400.2 428 61.0
Gohir.D05G039200 Gossypium hirsutum HOM05D005213 ORTHO05D006229 7.3e-109 398.3 432 58.1
Ciclev10008490m.g Citrus clementina HOM05D005213 ORTHO05D006229 6.2e-108 395.2 432 57.6
Duzib187G1454 Durio zibethinus HOM05D005213 ORTHO05D006229 4.4e-106 389.0 424 58.5
Cfa023359 Carpinus fangiana HOM05D005213 ORTHO05D006229 5.8e-106 388.7 424 59.0
Potri.006G217900 Populus trichocarpa HOM05D005213 ORTHO05D006229 3.7e-105 386.0 437 56.1
Haze_13552 Corylus avellana HOM05D005213 ORTHO05D006229 2.5e-101 373.2 426 57.7
TWI34G0479 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 7.3e-101 371.7 421 53.7
Manes.16G087800 Manihot esculenta HOM05D005213 ORTHO05D006229 3.6e-100 369.4 425 54.4
Cc08_g07800 Coffea canephora HOM05D005213 ORTHO05D006229 3.2e-96 356.3 434 54.1
Dinv41845 Davidia involucrata HOM05D005213 ORTHO05D006229 3.0e-94 349.7 454 55.1
Eucgr.C00749 Eucalyptus grandis HOM05D005213 ORTHO05D006229 8.6e-94 348.2 439 55.1
Duzib168G1397 Durio zibethinus HOM05D005213 ORTHO05D006229 5.6e-93 345.5 418 52.4
COL.COLO4_21169 Corchorus olitorius HOM05D005213 ORTHO05D006229 3.1e-91 339.7 444 54.3
Duzib150G1003 Durio zibethinus HOM05D005213 ORTHO05D006229 3.2e-88 329.7 396 54.0
Gorai.010G094100 Gossypium raimondii HOM05D005213 ORTHO05D006229 1.6e-87 327.4 423 51.1
Gohir.D06G080700 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.0e-86 324.7 423 50.8
MBI19_g18107_MAGBIO Magnolia biondii HOM05D004195 ORTHO05D005309 1.0e-86 324.7 433 51.0
Manes.03G055700 Manihot esculenta HOM05D005213 ORTHO05D006229 1.0e-86 324.7 392 54.1
Migut.A00332 Erythranthe guttata HOM05D005213 ORTHO05D006229 1.9e-85 320.5 436 50.5
Ca_15799_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.3e-84 317.8 431 49.7
Glyma.04G057900 Glycine max HOM05D005213 ORTHO05D006229 1.8e-83 313.9 427 49.4
Nn8g38551 Nelumbo nucifera HOM05D005213 ORTHO05D006229 2.4e-83 313.5 444 49.3
Peaxi162Scf00922g00016 Petunia axillaris HOM05D005213 ORTHO05D006229 9.0e-83 311.6 432 49.8
Gohir.A06G081000 Gossypium hirsutum HOM05D005213 ORTHO05D006229 2.2e-81 307.0 423 49.2
Glyma.06G058600 Glycine max HOM05D005213 ORTHO05D006229 4.9e-81 305.8 424 48.6
TWI32G0481 Tripterygium wilfordii HOM05D005213 ORTHO05D006229 6.4e-81 305.4 419 47.7
GSVIVG01035506001 Vitis vinifera HOM05D005213 ORTHO05D006229 1.6e-79 300.8 413 48.9
DCAR_001248 Daucus carota HOM05D005213 ORTHO05D006229 2.3e-78 297.0 415 48.2
VMungo1309G2063 Vigna mungo HOM05D005213 ORTHO05D006229 6.6e-78 295.4 410 49.3
Aqoxy7G04081 Aquilegia oxysepala HOM05D005213 ORTHO05D006229 1.9e-77 293.9 425 49.2
Phvul.009G084600 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.8e-76 290.0 422 48.8
Lj1g0011388 Lotus japonicus HOM05D005213 ORTHO05D006229 4.5e-74 282.7 426 47.9
CAN.G1059.3 Capsicum annuum HOM05D005213 ORTHO05D006229 9.9e-74 281.6 421 46.6
Nn6g35650 Nelumbo nucifera HOM05D005213 ORTHO05D006229 9.9e-74 281.6 428 47.2
Medtr3g105580 Medicago truncatula HOM05D005213 ORTHO05D006229 1.4e-72 277.7 409 46.7
Lalb_Chr11g0063421 Lupinus albus HOM05D005213 ORTHO05D006229 5.5e-72 275.8 357 52.7
Nitab4.5_0000508g0090 Nicotiana tabacum HOM05D005213 ORTHO05D006229 1.3e-70 271.2 417 47.0
CSS0041342 Camellia sinensis var. sinensis HOM05D005213 ORTHO05D006229 3.9e-70 269.6 474 46.4
Oeu020105.1 Olea europaea HOM05D005213 ORTHO05D006229 5.1e-70 269.2 402 46.8
PSO386G0069 Papaver somniferum HOM05D005213 ORTHO05D006229 1.9e-69 267.3 452 46.2
Nitab4.5_0007212g0010 Nicotiana tabacum HOM05D005213 ORTHO05D006229 5.6e-69 265.8 411 45.5
ATR0681G043 Amborella trichopoda HOM05D005213 ORTHO05D006229 4.0e-67 259.6 437 45.8
TPR.G21422 Trifolium pratense HOM05D005213 ORTHO05D006229 1.2e-66 258.1 417 47.0
Hund02523 Selenicereus undatus HOM05D005213 ORTHO05D006229 1.7e-65 254.2 348 47.1
Lj7P206T8 Lonicera japonica HOM05D005213 ORTHO05D006229 4.9e-65 252.7 334 50.0
Haze_18367 Corylus avellana HOM05D005213 ORTHO05D006229 6.5e-65 252.3 422 43.8
Rhsim04G0156600 Rhododendron simsii HOM05D005213 ORTHO05D006229 4.6e-63 246.1 448 44.2
Lalb_Chr22g0349651 Lupinus albus HOM05D005213 ORTHO05D006229 6.0e-63 245.7 414 46.4
SGA_v2.0_scaffold22G09922 Striga asiatica HOM05D005213 ORTHO05D006229 9.6e-61 238.4 406 42.1
HanXRQChr08g0228011 Helianthus annuus HOM05D005213 ORTHO05D006229 8.2e-60 235.3 416 42.8
CDE05G3316 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.4e-59 234.6 423 39.7
PSO223G0037 Papaver somniferum HOM05D005213 ORTHO05D006229 6.9e-59 232.3 451 41.5
Oeu022129.1 Olea europaea HOM05D005213 ORTHO05D006229 1.5e-58 231.1 322 47.8
TPR.G38861 Trifolium pratense HOM05D005213 ORTHO05D006229 5.9e-58 229.2 410 43.7
EL10Ac5g11257 Beta vulgaris HOM05D005213 ORTHO05D006229 1.3e-57 228.0 406 41.6
Psat5g033280 Pisum sativum HOM05D005213 ORTHO05D006229 6.5e-57 225.7 410 44.1
MSTRG.11768 Avicennia marina HOM05D005213 ORTHO05D006229 9.3e-56 221.9 320 47.2
Cfa017841 Carpinus fangiana HOM05D005213 ORTHO05D006229 3.6e-55 219.9 381 43.8
HanXRQChr03g0067421 Helianthus annuus HOM05D005213 ORTHO05D006229 3.9e-54 216.5 425 39.5
PGR142G1942 Punica granatum HOM05D005213 ORTHO05D006229 6.7e-54 215.7 422 42.9
CsaV3_6G031800 Cucumis sativus L. HOM05D005213 ORTHO05D006229 5.3e-51 206.1 415 36.9
THA.LOC104810950 Tarenaya hassleriana HOM05D005213 ORTHO05D006229 5.3e-51 206.1 407 41.3
AUR62032196 Chenopodium quinoa HOM05D005213 ORTHO05D006229 6.5e-49 199.1 414 37.7
ECA240G0440 Erigeron canadensis HOM05D005213 ORTHO05D006229 2.5e-48 197.2 420 39.0
Medtr1g014750 Medicago truncatula HOM05D005213 ORTHO05D006229 2.5e-48 197.2 346 45.1
CANSAT25G2504 Cannabis sativa HOM05D005213 ORTHO05D006229 2.7e-47 193.7 416 39.9
Hma1.2p1_0920F.1_g236590 Hydrangea macrophylla HOM05D005213 ORTHO05D006229 3.0e-46 190.3 426 39.9
ClCG08G009670 Citrullus lanatus HOM05D005213 ORTHO05D006229 1.5e-45 188.0 416 38.9
Gohir.A05G037666 Gossypium hirsutum HOM05D005213 ORTHO05D006229 1.5e-45 188.0 184 58.2
HanXRQChr10g0309951 Helianthus annuus HOM05D005213 ORTHO05D006229 9.1e-43 178.7 426 36.6
Solyc08g067270.3 Solanum lycopersicum HOM05D005213 ORTHO05D006229 1.0e-41 175.3 218 47.2
Zm00001eb019450 Zea mays HOM05D005213 ORTHO05D006229 1.7e-41 174.5 473 35.7
vmacro08659 Vaccinium macrocarpon HOM05D005213 ORTHO05D006229 8.5e-41 172.2 345 42.9
Oeu030214.1 Olea europaea HOM05D005213 ORTHO05D006229 1.4e-40 171.4 397 38.8
ECA234G4818 Erigeron canadensis HOM05D005213 ORTHO05D006229 1.9e-40 171.0 382 39.3
Sed0001538 Sechium edule HOM05D005213 ORTHO05D006229 1.6e-39 167.9 355 37.7
Ca_13089_v3 Cicer arietinum L. HOM05D005213 ORTHO05D006229 1.8e-38 164.5 306 40.5
CDE05G3450 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 9.7e-37 158.7 415 34.5
AUR62036963 Chenopodium quinoa HOM05D005213 ORTHO05D006229 4.1e-35 153.3 415 31.1
Actinidia26432 Actinidia chinensis HOM05D005213 ORTHO05D006229 7.0e-35 152.5 180 46.1
Sc10g0009530 Simmondsia chinensis HOM05D005213 ORTHO05D006229 1.0e-33 148.7 401 32.4
MELO3C026560.2 Cucumis melo HOM05D005213 ORTHO05D006229 6.5e-33 146.0 385 32.5
Psat6g023400 Pisum sativum HOM05D005213 ORTHO05D006229 1.9e-32 144.4 389 35.5
Sopen08g021200 Solanum pennellii HOM05D005213 ORTHO05D006229 1.6e-31 141.4 118 58.5
SalBow8G0306 Salvia bowleyana HOM05D005213 ORTHO05D006229 8.8e-30 135.6 413 33.2
HPP92_002168 Vanilla planifolia HOM05D006173 ORTHO05D007685 2.0e-29 134.4 303 38.9
Atru.chr7.1814 Acer truncatum HOM05D005213 ORTHO05D006229 1.8e-27 127.9 122 63.9
unitig_32.g10930 Utricularia gibba HOM05D005213 ORTHO05D006229 4.5e-26 123.2 350 32.3
Lalb_Chr08g0244621 Lupinus albus HOM05D005213 ORTHO05D006229 2.9e-25 120.6 114 52.6
AT5G21280 Arabidopsis thaliana HOM05D005213 ORTHO05D006229 1.1e-24 118.6 361 33.5
Actinidia27819 Actinidia chinensis HOM05D005213 ORTHO05D006229 2.5e-24 117.5 123 63.4
Phvul.001G044200 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.7e-23 114.0 306 33.0
BcaC03g13850 Brassica carinata HOM05D005213 ORTHO05D006229 3.6e-23 113.6 347 32.3
BolC2t07127H Brassica oleracea HOM05D005213 ORTHO05D006229 3.6e-23 113.6 347 32.3
Phvul.001G044400 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 4.0e-22 110.2 372 32.5
BcaB05g22758 Brassica carinata HOM05D005213 ORTHO05D006229 6.8e-22 109.4 344 34.6
C03p12080 Brassica napus HOM05D005213 ORTHO05D006229 6.8e-22 109.4 345 31.9
BcaC01g06616 Brassica carinata HOM05D005213 ORTHO05D006229 8.8e-22 109.0 345 31.9
BolC3t13679H Brassica oleracea HOM05D005213 ORTHO05D006229 8.8e-22 109.0 345 31.9
BraA03t10361Z Brassica rapa HOM05D005213 ORTHO05D006229 1.2e-21 108.6 348 33.3
BNapus_Darmor_BZH_scaffold_38p00940 Brassica napus HOM05D005213 ORTHO05D006229 1.5e-21 108.2 346 32.1
BraA02t05631Z Brassica rapa HOM05D005213 ORTHO05D006229 1.5e-21 108.2 346 32.1
BraA10t43954Z Brassica rapa HOM05D005213 ORTHO05D006229 1.3e-20 105.1 350 32.9
CDE11G0900 Ceratophyllum demersum HOM05D005213 ORTHO05D006229 1.3e-20 105.1 323 33.7
BcaB08g36461 Brassica carinata HOM05D005213 ORTHO05D006229 2.2e-20 104.4 349 33.5
Carub.0006s1962 Capsella rubella HOM05D005213 ORTHO05D006229 3.7e-20 103.6 412 30.1
A10p18740 Brassica napus HOM05D005213 ORTHO05D006229 6.3e-20 102.8 350 32.6
ECA236G4272 Erigeron canadensis HOM05D005213 ORTHO05D006229 8.3e-20 102.4 322 31.4
A03p10500 Brassica napus HOM05D005213 ORTHO05D006229 2.4e-19 100.9 347 32.3
BolC9t58333H Brassica oleracea HOM05D005213 ORTHO05D006229 2.4e-19 100.9 350 32.6
C09p54690 Brassica napus HOM05D005213 ORTHO05D006229 3.1e-19 100.5 350 32.6
CARHR191550 Cardamine hirsuta HOM05D005213 ORTHO05D006229 7.0e-19 99.4 346 32.4
Aa31LG1G13440 Aethionema arabicum HOM05D005213 ORTHO05D006229 9.1e-19 99.0 181 45.9
BcaC04g19528 Brassica carinata HOM05D005213 ORTHO05D006229 1.6e-18 98.2 349 31.8
Thhalv10014216m.g Eutrema salsugineum HOM05D005213 ORTHO05D006229 4.5e-18 96.7 411 29.7
arahy.Tifrunner.gnm1.ann1.698XEU Arachis hypogaea HOM05D005213 ORTHO05D006229 5.9e-18 96.3 320 32.5
VMungo0477G0001 Vigna mungo HOM05D005213 ORTHO05D006229 1.7e-17 94.7 448 28.3
arahy.Tifrunner.gnm1.ann1.3D63PE Arachis hypogaea HOM05D005213 ORTHO05D006229 3.8e-17 93.6 319 32.9
SGA_v2.0_scaffold4G02181 Striga asiatica HOM05D005213 ORTHO05D006229 6.5e-17 92.8 403 29.8
HPP92_013274 Vanilla planifolia HOM05D005213 ORTHO05D006229 1.5e-16 91.7 320 30.6
CsaV3_4G036220 Cucumis sativus L. HOM05D005213 ORTHO05D006229 1.2e-15 88.6 359 32.6
AL6G32940 Arabidopsis lyrata HOM05D005213 ORTHO05D006229 3.6e-15 87.0 412 30.1
Sp6g23210 Schrenkiella parvula HOM05D005213 ORTHO05D006229 1.0e-14 85.5 109 52.3
Phvul.001G044300 Phaseolus vulgaris HOM05D005213 ORTHO05D006229 2.3e-14 84.3 175 42.9
HanXRQChr09g0261901 Helianthus annuus HOM05D005213 ORTHO05D006229 3.0e-14 84.0 237 35.9
Migut.E01467 Erythranthe guttata HOM05D005213 ORTHO05D006229 4.0e-14 83.6 412 29.4
MELO3C016931.2 Cucumis melo HOM05D005213 ORTHO05D006229 3.4e-13 80.5 355 31.0
BcaB01g04752 Brassica carinata HOM05D005213 ORTHO05D006229 5.7e-13 79.7 148 42.6
ClCG05G015950 Citrullus lanatus HOM05D005213 ORTHO05D006229 5.7e-13 79.7 346 32.7
BraA03t10362Z Brassica rapa HOM05D005213 ORTHO05D006229 1.7e-12 78.2 49 85.7
SEGI_40729 Sequoiadendron giganteum HOM05D005213 ORTHO05D006229 2.8e-12 77.4 395 28.1
unitig_747.g21889 Utricularia gibba HOM05D005213 ORTHO05D006229 3.7e-12 77.0 392 27.6
Zm00001eb109280 Zea mays HOM05D005213 ORTHO05D006229 3.1e-11 73.9 424 26.7
HPP92_004172 Vanilla planifolia HOM05D001722 ORTHO05D001910 2.5e-08 64.3 76 40.8


User provided reference genes

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