Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1030000 Malus domestica HOM05D005308 ORTHO05D006494 0.0e+00 1215.7 629 100.0
MD08G1033400 Malus domestica HOM05D005308 ORTHO05D006494 3.4e-307 1057.7 637 86.0
Prupe.1G381500 Prunus persica HOM05D005308 ORTHO05D006494 3.7e-298 1027.7 643 84.1
RcHm_v2.0_Chr6g0300791 Rosa chinensis HOM05D005308 ORTHO05D006494 8.4e-274 946.8 639 76.8
FvH4_2g39960 Fragaria vesca HOM05D005308 ORTHO05D006494 4.2e-265 917.9 594 79.8
FAN27G1201 Fragaria x ananassa HOM05D005308 ORTHO05D006494 9.3e-265 916.8 602 78.9
FAN15G3722 Fragaria x ananassa HOM05D005308 ORTHO05D006494 7.9e-264 913.7 594 80.1
QL02p007937 Quercus lobata HOM05D005308 ORTHO05D006494 1.2e-227 793.5 600 69.0
Cfa018137 Carpinus fangiana HOM05D005308 ORTHO05D006494 1.0e-226 790.4 606 68.2
Haze_17987 Corylus avellana HOM05D005308 ORTHO05D006494 1.7e-226 789.6 606 68.3
GSVIVG01009686001 Vitis vinifera HOM05D005308 ORTHO05D006494 2.1e-224 782.7 644 64.1
Manes.05G161700 Manihot esculenta HOM05D005308 ORTHO05D006494 6.1e-224 781.2 645 64.3
Glyma.14G076200 Glycine max HOM05D005308 ORTHO05D006494 5.2e-223 778.1 655 64.7
Atru.chr13.513 Acer truncatum HOM05D005308 ORTHO05D006494 2.2e-221 772.7 658 61.7
Atru.chr8.2603 Acer truncatum HOM05D005308 ORTHO05D006494 6.3e-221 771.2 658 61.7
Dinv39406 Davidia involucrata HOM05D005308 ORTHO05D006494 1.1e-220 770.4 605 66.8
CiPaw.15G075700 Carya illinoinensis HOM05D005308 ORTHO05D006494 4.1e-220 768.5 664 63.1
Ciclev10000534m.g Citrus clementina HOM05D005308 ORTHO05D006494 3.5e-219 765.4 666 62.0
Lj5g0021582 Lotus japonicus HOM05D005308 ORTHO05D006494 5.9e-219 764.6 651 62.1
ClCG08G015210 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.3e-218 763.5 656 63.3
ClCG08G015240 Citrullus lanatus HOM05D005308 ORTHO05D006494 1.3e-218 763.5 656 63.3
PGR031G2270 Punica granatum HOM05D005308 ORTHO05D006494 3.8e-218 761.9 611 64.8
Sabra02G0199700 Salix brachista HOM05D005308 ORTHO05D006494 6.5e-218 761.1 605 66.1
MELO3C010930.2 Cucumis melo HOM05D005308 ORTHO05D006494 1.6e-216 756.5 653 62.3
Hma1.2p1_0077F.1_g039700 Hydrangea macrophylla HOM05D005308 ORTHO05D006494 2.1e-216 756.1 613 65.6
Thecc.08G024400 Theobroma cacao HOM05D005308 ORTHO05D006494 2.7e-216 755.7 649 62.2
Potri.002G262900 Populus trichocarpa HOM05D005308 ORTHO05D006494 3.6e-216 755.4 610 65.1
Duzib041G0136 Durio zibethinus HOM05D005308 ORTHO05D006494 6.1e-216 754.6 653 62.6
Potri.014G180900 Populus trichocarpa HOM05D005308 ORTHO05D006494 1.4e-215 753.4 656 61.6
Sed0011840 Sechium edule HOM05D005308 ORTHO05D006494 1.4e-215 753.4 657 61.6
Medtr1g022045 Medicago truncatula HOM05D005308 ORTHO05D006494 6.7e-215 751.1 651 60.8
CsaV3_2G028560 Cucumis sativus L. HOM05D005308 ORTHO05D006494 8.8e-215 750.7 652 61.3
Glyma.17G249600 Glycine max HOM05D005308 ORTHO05D006494 1.7e-213 746.5 660 62.3
Ca_13346_v3 Cicer arietinum L. HOM05D005308 ORTHO05D006494 8.2e-213 744.2 650 61.1
Phvul.001G015400 Phaseolus vulgaris HOM05D005308 ORTHO05D006494 1.1e-212 743.8 652 63.0
Duzib116G0819 Durio zibethinus HOM05D005308 ORTHO05D006494 4.1e-212 741.9 655 61.1
Duzib093G0415 Durio zibethinus HOM05D005308 ORTHO05D006494 7.0e-212 741.1 599 64.8
Gohir.A06G010900 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.2e-211 740.3 594 64.8
Eucgr.F01908 Eucalyptus grandis HOM05D005308 ORTHO05D006494 1.6e-211 740.0 648 61.9
Gorai.010G011100 Gossypium raimondii HOM05D005308 ORTHO05D006494 1.6e-211 740.0 594 65.0
Gorai.009G203600 Gossypium raimondii HOM05D005308 ORTHO05D006494 3.5e-211 738.8 663 60.8
Lalb_Chr22g0355491 Lupinus albus HOM05D005308 ORTHO05D006494 7.7e-211 737.6 547 68.0
Gohir.D06G008300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.0e-210 737.3 594 65.0
COL.COLO4_26340 Corchorus olitorius HOM05D005308 ORTHO05D006494 2.9e-210 735.7 552 70.1
Psat6g007480 Pisum sativum HOM05D005308 ORTHO05D006494 1.1e-209 733.8 666 59.6
Sed0021548 Sechium edule HOM05D005308 ORTHO05D006494 3.2e-209 732.3 650 60.3
VMungo0647G0443 Vigna mungo HOM05D005308 ORTHO05D006494 7.2e-209 731.1 660 62.0
Gohir.D05G198500 Gossypium hirsutum HOM05D005308 ORTHO05D006494 8.0e-208 727.6 661 59.9
Gohir.A05G195300 Gossypium hirsutum HOM05D005308 ORTHO05D006494 1.8e-207 726.5 680 59.3
vmacro04517 Vaccinium macrocarpon HOM05D005308 ORTHO05D006494 9.8e-206 720.7 598 62.2
TPR.G29756 Trifolium pratense HOM05D005308 ORTHO05D006494 2.8e-205 719.2 660 59.7
Nitab4.5_0003783g0070 Nicotiana tabacum HOM05D005308 ORTHO05D006494 3.7e-205 718.8 606 63.0
Nitab4.5_0000110g0380 Nicotiana tabacum HOM05D005308 ORTHO05D006494 1.4e-204 716.8 606 62.9
Rhsim07G0237100 Rhododendron simsii HOM05D005308 ORTHO05D006494 2.4e-204 716.1 609 63.1
Cc03_g06460 Coffea canephora HOM05D005308 ORTHO05D006494 1.9e-201 706.4 609 61.1
TWI73G1022 Tripterygium wilfordii HOM05D005308 ORTHO05D006494 9.5e-201 704.1 638 60.5
PGSC0003DMG400005144 Solanum tuberosum HOM05D005308 ORTHO05D006494 8.8e-199 697.6 599 61.8
CsaV3_2G028600 Cucumis sativus L. HOM05D005308 ORTHO05D006494 2.0e-198 696.4 637 58.1
Lj4P784T41 Lonicera japonica HOM05D005308 ORTHO05D006494 5.7e-198 694.9 591 62.4
THA.LOC104813841 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.3e-197 693.7 609 61.1
Sc02g0006300 Simmondsia chinensis HOM05D005308 ORTHO05D006494 2.2e-197 693.0 637 58.9
Solyc04g080180.1 Solanum lycopersicum HOM05D005308 ORTHO05D006494 2.8e-197 692.6 599 61.6
Sopen04g033770 Solanum pennellii HOM05D005308 ORTHO05D006494 1.1e-196 690.6 599 61.6
CAN.G1126.42 Capsicum annuum HOM05D005308 ORTHO05D006494 2.4e-196 689.5 609 61.1
Aqoxy3G02057 Aquilegia oxysepala HOM05D005308 ORTHO05D006494 9.2e-196 687.6 618 59.4
EL10Ac9g23018 Beta vulgaris HOM05D005308 ORTHO05D006494 1.6e-195 686.8 591 60.9
AUR62032897 Chenopodium quinoa HOM05D005308 ORTHO05D006494 2.7e-195 686.0 593 60.2
Ah.01g011450 Amaranthus hybridus HOM05D005308 ORTHO05D006494 7.3e-193 677.9 597 59.3
Sp5g30270 Schrenkiella parvula HOM05D005308 ORTHO05D006494 1.0e-191 674.1 594 59.9
Peaxi162Scf00690g00113 Petunia axillaris HOM05D005308 ORTHO05D006494 3.7e-189 665.6 612 59.8
Carub.0002s2195 Capsella rubella HOM05D005308 ORTHO05D006494 1.1e-188 664.1 652 56.6
CARHR068470 Cardamine hirsuta HOM05D005308 ORTHO05D006494 3.2e-188 662.5 590 59.0
Thhalv10018268m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 7.0e-188 661.4 595 59.7
SalBow5G1122 Salvia bowleyana HOM05D005308 ORTHO05D006494 6.6e-186 654.8 525 62.7
MSTRG.11457 Avicennia marina HOM05D005308 ORTHO05D006494 4.3e-185 652.1 603 56.9
Aa31LG7G4080 Aethionema arabicum HOM05D005308 ORTHO05D006494 5.6e-185 651.7 599 57.4
AL2G35040 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.8e-184 649.4 594 59.6
AT1G75140 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 2.8e-184 649.4 594 59.4
Oeu052497.1 Olea europaea HOM05D005308 ORTHO05D006494 1.4e-183 647.1 646 54.2
Oeu016389.1 Olea europaea HOM05D005308 ORTHO05D006494 5.2e-183 645.2 632 54.6
THA.LOC104806374 Tarenaya hassleriana HOM05D005308 ORTHO05D006494 1.5e-182 643.7 601 57.7
AT1G19370 Arabidopsis thaliana HOM05D005308 ORTHO05D006494 3.2e-180 636.0 639 54.0
Carub.0001s1896 Capsella rubella HOM05D005308 ORTHO05D006494 3.2e-180 636.0 639 54.1
DCAR_019524 Daucus carota HOM05D005308 ORTHO05D006494 3.2e-180 636.0 603 56.1
AUR62017754 Chenopodium quinoa HOM05D005308 ORTHO05D006494 5.4e-180 635.2 492 65.7
Sp1g17280 Schrenkiella parvula HOM05D005308 ORTHO05D006494 7.0e-180 634.8 596 56.7
CSS0027115 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 3.5e-179 632.5 628 57.3
MSTRG.23132 Avicennia marina HOM05D005308 ORTHO05D006494 7.8e-179 631.3 599 56.9
TAR376G0813 Trochodendron aralioides HOM05D005308 ORTHO05D006494 1.7e-178 630.2 583 58.1
AL1G31960 Arabidopsis lyrata HOM05D005308 ORTHO05D006494 2.3e-178 629.8 641 54.0
PSO063G3485 Papaver somniferum HOM05D005308 ORTHO05D006494 2.3e-178 629.8 730 50.0
HanXRQChr05g0151851 Helianthus annuus HOM05D005308 ORTHO05D006494 3.9e-178 629.0 617 54.5
PSO782G4716 Papaver somniferum HOM05D005308 ORTHO05D006494 6.6e-178 628.2 671 52.2
CARHR019960 Cardamine hirsuta HOM05D005308 ORTHO05D006494 9.5e-177 624.4 547 59.8
BcaB02g06995 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-176 624.0 630 54.6
BraA06t24665Z Brassica rapa HOM05D005308 ORTHO05D006494 1.2e-176 624.0 636 54.2
Migut.I00006 Erythranthe guttata HOM05D005308 ORTHO05D006494 2.1e-176 623.2 614 55.5
Nn3g19273 Nelumbo nucifera HOM05D005308 ORTHO05D006494 2.8e-176 622.9 537 61.1
C06p32820 Brassica napus HOM05D005308 ORTHO05D006494 4.7e-176 622.1 630 54.4
A06p15530 Brassica napus HOM05D005308 ORTHO05D006494 6.2e-176 621.7 636 53.9
BolC6t38403H Brassica oleracea HOM05D005308 ORTHO05D006494 4.0e-175 619.0 631 55.0
BolC5t30482H Brassica oleracea HOM05D005308 ORTHO05D006494 8.9e-175 617.8 526 60.8
BraA07t30544Z Brassica rapa HOM05D005308 ORTHO05D006494 2.2e-173 613.2 642 53.4
A07p29040 Brassica napus HOM05D005308 ORTHO05D006494 1.1e-172 610.9 642 53.1
DCAR_020966 Daucus carota HOM05D005308 ORTHO05D006494 3.2e-172 609.4 561 57.8
CSS0028044 Camellia sinensis var. sinensis HOM05D005308 ORTHO05D006494 7.1e-172 608.2 445 70.6
BcaB02g07009 Brassica carinata HOM05D005308 ORTHO05D006494 1.7e-170 603.6 640 53.8
BcaB07g31957 Brassica carinata HOM05D005308 ORTHO05D006494 7.3e-169 598.2 636 53.9
Thhalv10009294m.g Eutrema salsugineum HOM05D005308 ORTHO05D006494 1.4e-167 594.0 596 55.4
ECA246G5303 Erigeron canadensis HOM05D005308 ORTHO05D006494 1.8e-167 593.6 564 56.4
Aa31LG4G5330 Aethionema arabicum HOM05D005308 ORTHO05D006494 4.4e-166 589.0 609 53.9
CDE11G0691 Ceratophyllum demersum HOM05D005308 ORTHO05D006494 9.6e-161 571.2 596 50.8
Lsat_1_v5_gn_5_29021 Lactuca sativa HOM05D005308 ORTHO05D006494 2.0e-158 563.5 509 57.4
MBI04_g27271_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.9e-157 558.9 604 51.0
SHI08167 Sapria himalayana HOM05D005308 ORTHO05D006494 7.9e-147 525.0 592 51.0
SEGI_39092 Sequoiadendron giganteum HOM05D005308 ORTHO05D006494 5.1e-146 522.3 620 47.1
SGA_v2.0_scaffold90G27910 Striga asiatica HOM05D005308 ORTHO05D006494 8.7e-146 521.5 616 49.2
ATR0829G103 Amborella trichopoda HOM05D005308 ORTHO05D006494 2.8e-144 516.5 627 46.7
MBI04_g21134_MAGBIO Magnolia biondii HOM05D005308 ORTHO05D006494 4.0e-135 486.1 594 47.8
Os06g0115200 Oryza sativa ssp. japonica HOM05D005308 ORTHO05D006494 1.8e-122 444.1 563 44.6
Zm00001eb269050 Zea mays HOM05D005308 ORTHO05D006494 4.5e-118 429.5 631 40.7
Actinidia38015 Actinidia chinensis HOM05D005308 ORTHO05D006494 6.5e-117 425.6 615 45.5
C05p17770 Brassica napus HOM05D005308 ORTHO05D006494 8.8e-98 362.1 257 67.3
Pp3c20_21760 Physcomitrium patens HOM05D005308 ORTHO05D006494 1.2e-97 361.7 563 38.4
AagrBONN_evm.TU.Sc2ySwM_228.2792 Anthoceros agrestis HOM05D005308 ORTHO05D006494 9.1e-95 352.1 474 41.4
Pp3c10_23930 Physcomitrium patens HOM05D005308 ORTHO05D006494 2.9e-93 347.1 552 38.6
BcaNung07223 Brassica carinata HOM05D005308 ORTHO05D006494 5.0e-93 346.3 320 58.8
Mapoly0094s0054 Marchantia polymorpha HOM05D005308 ORTHO05D006494 1.9e-92 344.4 552 38.6
SMO361G0791 Selaginella moellendorffii HOM05D005308 ORTHO05D006494 6.8e-90 335.9 409 45.0
BcaNung07297 Brassica carinata HOM05D005308 ORTHO05D006494 1.5e-89 334.7 238 67.6
BcaB02g07002 Brassica carinata HOM05D005308 ORTHO05D006494 1.2e-81 308.5 217 66.8
unitig_0.g1436 Utricularia gibba HOM05D005308 ORTHO05D006494 2.0e-73 281.2 329 46.5
unitig_0.g1437 Utricularia gibba HOM05D005308 ORTHO05D006494 3.3e-52 210.7 244 50.4
A07p29060 Brassica napus HOM05D005308 ORTHO05D006494 7.6e-49 199.5 125 73.6
MCO12G330 Micromonas commoda HOM05D005308 ORTHO05D006494 2.2e-24 118.2 534 23.4
BcaC07g37382 Brassica carinata HOM05D005308 ORTHO05D006494 2.2e-08 65.1 61 52.5
CBR_g49554 Chara braunii HOM05D005308 ORTHO05D006494 6.5e-08 63.5 152 30.9
SHI17314 Sapria himalayana HOM05D005308 ORTHO05D006494 1.1e-07 62.8 137 33.6


User provided reference genes

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