Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1010000 Malus domestica HOM05D003616 ORTHO05D004289 1.5e-95 352.8 174 100.0
Prupe.1G362400 Prunus persica HOM05D003616 ORTHO05D004289 6.5e-75 284.3 201 74.1
MD08G1010100 Malus domestica HOM05D003616 ORTHO05D004289 8.4e-75 283.9 200 74.0
Potri.005G242500 Populus trichocarpa HOM05D003616 ORTHO05D004289 6.0e-73 277.7 201 69.7
FvH4_2g38150 Fragaria vesca HOM05D003616 ORTHO05D004289 1.8e-72 276.2 201 72.1
RcHm_v2.0_Chr6g0303331 Rosa chinensis HOM05D003616 ORTHO05D004289 1.8e-72 276.2 201 72.6
FAN27G0470 Fragaria x ananassa HOM05D003616 ORTHO05D004289 5.1e-72 274.6 201 71.6
FAN15G3669 Fragaria x ananassa HOM05D003616 ORTHO05D004289 2.5e-71 272.3 201 71.1
Atru.chr13.252 Acer truncatum HOM05D003616 ORTHO05D004289 8.2e-70 267.3 198 68.2
CSS0016648 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 1.8e-69 266.2 204 67.6
COL.COLO4_26116 Corchorus olitorius HOM05D003616 ORTHO05D004289 3.1e-69 265.4 198 69.2
Gohir.A05G184900 Gossypium hirsutum HOM05D003616 ORTHO05D004289 5.3e-69 264.6 198 68.2
Sabra05G0187700 Salix brachista HOM05D003616 ORTHO05D004289 6.9e-69 264.2 214 65.4
Gorai.009G193000 Gossypium raimondii HOM05D003616 ORTHO05D004289 1.2e-68 263.5 198 68.2
CiPaw.07G146600 Carya illinoinensis HOM05D003616 ORTHO05D004289 2.0e-68 262.7 198 67.7
Duzib093G0398 Durio zibethinus HOM05D003616 ORTHO05D004289 2.6e-68 262.3 198 68.7
Cfa013983 Carpinus fangiana HOM05D003616 ORTHO05D004289 5.9e-68 261.2 198 67.2
Dinv39539 Davidia involucrata HOM05D003616 ORTHO05D004289 5.9e-68 261.2 204 66.2
CANSAT25G0701 Cannabis sativa HOM05D003616 ORTHO05D004289 7.6e-68 260.8 201 68.2
Gohir.D05G187700 Gossypium hirsutum HOM05D003616 ORTHO05D004289 7.6e-68 260.8 198 67.7
Manes.18G011100 Manihot esculenta HOM05D003616 ORTHO05D004289 1.3e-67 260.0 201 67.2
Lj4A21T62 Lonicera japonica HOM05D003616 ORTHO05D004289 1.7e-67 259.6 201 67.2
Lj1g0017366 Lotus japonicus HOM05D003616 ORTHO05D004289 1.7e-67 259.6 197 67.0
Ca_15480_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 6.5e-67 257.7 197 65.5
QL02p012220 Quercus lobata HOM05D003616 ORTHO05D004289 6.5e-67 257.7 200 65.5
Thecc.08G048000 Theobroma cacao HOM05D003616 ORTHO05D004289 6.5e-67 257.7 198 67.7
Medtr3g114070 Medicago truncatula HOM05D003616 ORTHO05D004289 8.5e-67 257.3 200 66.0
TAR629G1297 Trochodendron aralioides HOM05D003616 ORTHO05D004289 8.5e-67 257.3 201 67.2
MBI04_g06229_MAGBIO Magnolia biondii HOM05D003616 ORTHO05D004289 1.1e-66 256.9 198 66.2
Phvul.009G009900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 1.4e-66 256.5 197 66.5
Psat5g012880 Pisum sativum HOM05D003616 ORTHO05D004289 1.9e-66 256.1 191 67.5
GSVIVG01009954001 Vitis vinifera HOM05D003616 ORTHO05D004289 1.9e-66 256.1 201 65.7
Sc02g0008690 Simmondsia chinensis HOM05D003616 ORTHO05D004289 2.5e-66 255.8 204 65.2
Oeu026133.1 Olea europaea HOM05D003616 ORTHO05D004289 3.2e-66 255.4 200 65.0
Glyma.04G023200 Glycine max HOM05D003616 ORTHO05D004289 7.2e-66 254.2 197 65.5
MELO3C011352.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.6e-65 253.1 201 65.2
Lalb_Chr08g0246201 Lupinus albus HOM05D003616 ORTHO05D004289 1.6e-65 253.1 197 65.5
TAR625G0790 Trochodendron aralioides HOM05D003616 ORTHO05D004289 1.6e-65 253.1 204 65.2
Hma1.2p1_0023F.1_g015660 Hydrangea macrophylla HOM05D003616 ORTHO05D004289 2.7e-65 252.3 204 64.2
Actinidia15440 Actinidia chinensis HOM05D003616 ORTHO05D004289 3.6e-65 251.9 204 63.7
arahy.Tifrunner.gnm1.ann1.MX1HG7 Arachis hypogaea HOM05D003616 ORTHO05D004289 4.6e-65 251.5 199 64.3
arahy.Tifrunner.gnm1.ann1.TXJ4LD Arachis hypogaea HOM05D003616 ORTHO05D004289 4.6e-65 251.5 199 64.3
VMungo1309G2159 Vigna mungo HOM05D003616 ORTHO05D004289 6.1e-65 251.1 197 65.5
TWI12G0315 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 2.3e-64 249.2 198 63.6
Haze_22668 Corylus avellana HOM05D003616 ORTHO05D004289 3.9e-64 248.4 210 62.9
Migut.C00863 Erythranthe guttata HOM05D003616 ORTHO05D004289 3.9e-64 248.4 203 63.5
Eucgr.H00953 Eucalyptus grandis HOM05D003616 ORTHO05D004289 3.9e-64 248.4 196 64.8
Lsat_1_v5_gn_2_9140 Lactuca sativa HOM05D003616 ORTHO05D004289 8.7e-64 247.3 189 65.6
Solyc04g081740.3 Solanum lycopersicum HOM05D003616 ORTHO05D004289 8.7e-64 247.3 201 63.7
Sopen04g035370 Solanum pennellii HOM05D003616 ORTHO05D004289 1.5e-63 246.5 201 63.7
CsaV3_2G024290 Cucumis sativus L. HOM05D003616 ORTHO05D004289 1.9e-63 246.1 201 63.2
Nn4g24400 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.9e-63 246.1 204 62.3
Sed0022788 Sechium edule HOM05D003616 ORTHO05D004289 1.9e-63 246.1 198 63.1
Ciclev10001861m.g Citrus clementina HOM05D003616 ORTHO05D004289 3.3e-63 245.4 193 65.8
Cc10_g01410 Coffea canephora HOM05D003616 ORTHO05D004289 4.3e-63 245.0 202 64.4
Haze_18855 Corylus avellana HOM05D003616 ORTHO05D004289 4.3e-63 245.0 206 62.6
CSS0013276 Camellia sinensis var. sinensis HOM05D003616 ORTHO05D004289 5.7e-63 244.6 204 62.7
Ciclev10008944m.g Citrus clementina HOM05D003616 ORTHO05D004289 5.7e-63 244.6 203 62.6
MSTRG.24236 Avicennia marina HOM05D003616 ORTHO05D004289 7.4e-63 244.2 204 62.7
TWI60G1662 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 7.4e-63 244.2 205 62.4
AL8G19670 Arabidopsis lyrata HOM05D003616 ORTHO05D004289 9.7e-63 243.8 198 63.6
CAN.G311.50 Capsicum annuum HOM05D003616 ORTHO05D004289 9.7e-63 243.8 201 63.2
Cpa.g.sc3.395 Carica papaya HOM05D003616 ORTHO05D004289 9.7e-63 243.8 200 63.0
CDE05G1955 Ceratophyllum demersum HOM05D003616 ORTHO05D004289 9.7e-63 243.8 200 63.5
PGR031G0359 Punica granatum HOM05D003616 ORTHO05D004289 9.7e-63 243.8 199 62.8
Hund05170 Selenicereus undatus HOM05D003616 ORTHO05D004289 9.7e-63 243.8 204 62.7
Atru.chr9.1732 Acer truncatum HOM05D003616 ORTHO05D004289 1.3e-62 243.4 204 62.7
Actinidia28138 Actinidia chinensis HOM05D003616 ORTHO05D004289 1.7e-62 243.0 204 62.3
Cfa019655 Carpinus fangiana HOM05D003616 ORTHO05D004289 1.7e-62 243.0 206 62.1
Peaxi162Scf00860g00047 Petunia axillaris HOM05D003616 ORTHO05D004289 2.8e-62 242.3 201 62.2
Thhalv10027850m.g Eutrema salsugineum HOM05D003616 ORTHO05D004289 3.7e-62 241.9 198 62.6
TWI15G0798 Tripterygium wilfordii HOM05D003616 ORTHO05D004289 3.7e-62 241.9 205 60.5
Carub.0008s0714 Capsella rubella HOM05D003616 ORTHO05D004289 4.8e-62 241.5 198 62.6
AT5G42150 Arabidopsis thaliana HOM05D003616 ORTHO05D004289 6.3e-62 241.1 198 62.6
GSVIVG01008442001 Vitis vinifera HOM05D003616 ORTHO05D004289 6.3e-62 241.1 203 62.1
QL10p029638 Quercus lobata HOM05D003616 ORTHO05D004289 8.2e-62 240.7 203 61.6
Aqoxy2G03601 Aquilegia oxysepala HOM05D003616 ORTHO05D004289 1.4e-61 240.0 202 61.9
Duzib084G0113 Durio zibethinus HOM05D003616 ORTHO05D004289 1.4e-61 240.0 204 62.3
Eucgr.B01000 Eucalyptus grandis HOM05D003616 ORTHO05D004289 1.4e-61 240.0 206 61.2
SGA_v2.0_scaffold19G08556 Striga asiatica HOM05D003616 ORTHO05D004289 1.4e-61 240.0 221 59.3
CiPaw.15G143500 Carya illinoinensis HOM05D003616 ORTHO05D004289 1.8e-61 239.6 201 61.7
Sp7g08670 Schrenkiella parvula HOM05D003616 ORTHO05D004289 1.8e-61 239.6 198 62.6
AUR62013931 Chenopodium quinoa HOM05D003616 ORTHO05D004289 2.4e-61 239.2 201 60.7
Migut.N03175 Erythranthe guttata HOM05D003616 ORTHO05D004289 2.4e-61 239.2 201 61.7
Potri.012G046600 Populus trichocarpa HOM05D003616 ORTHO05D004289 2.4e-61 239.2 206 62.1
Manes.14G171500 Manihot esculenta HOM05D003616 ORTHO05D004289 3.1e-61 238.8 204 63.7
Thecc.03G055800 Theobroma cacao HOM05D003616 ORTHO05D004289 3.1e-61 238.8 204 61.8
EL10Ac1g02157 Beta vulgaris HOM05D003616 ORTHO05D004289 4.1e-61 238.4 198 61.1
ECA238G4543 Erigeron canadensis HOM05D003616 ORTHO05D004289 5.3e-61 238.0 189 64.0
BcaB04g19405 Brassica carinata HOM05D003616 ORTHO05D004289 6.9e-61 237.7 201 61.2
AUR62040567 Chenopodium quinoa HOM05D003616 ORTHO05D004289 6.9e-61 237.7 204 60.3
Nitab4.5_0006505g0020 Nicotiana tabacum HOM05D003616 ORTHO05D004289 6.9e-61 237.7 201 60.7
Cc02_g37150 Coffea canephora HOM05D003616 ORTHO05D004289 9.1e-61 237.3 204 61.3
HanXRQChr06g0183781 Helianthus annuus HOM05D003616 ORTHO05D004289 9.1e-61 237.3 189 63.5
PSO541G0876 Papaver somniferum HOM05D003616 ORTHO05D004289 9.1e-61 237.3 205 59.5
Potri.015G038300 Populus trichocarpa HOM05D003616 ORTHO05D004289 9.1e-61 237.3 206 61.7
CARHR284720 Cardamine hirsuta HOM05D003616 ORTHO05D004289 1.2e-60 236.9 198 61.1
SGA_v2.0_scaffold92G28201 Striga asiatica HOM05D003616 ORTHO05D004289 1.2e-60 236.9 201 60.7
CsaV3_1G004390 Cucumis sativus L. HOM05D003616 ORTHO05D004289 2.0e-60 236.1 201 61.2
HanXRQChr07g0204451 Helianthus annuus HOM05D003616 ORTHO05D004289 2.0e-60 236.1 205 61.0
Os04g0244400 Oryza sativa ssp. japonica HOM05D003616 ORTHO05D004289 3.4e-60 235.3 197 58.9
SalBow8G4338 Salvia bowleyana HOM05D003616 ORTHO05D004289 3.4e-60 235.3 206 60.2
TPR.G8619 Trifolium pratense HOM05D003616 ORTHO05D004289 3.4e-60 235.3 204 61.3
PSO675G9362 Papaver somniferum HOM05D003616 ORTHO05D004289 4.5e-60 235.0 205 59.0
PGR083G0078 Punica granatum HOM05D003616 ORTHO05D004289 5.9e-60 234.6 204 61.8
Sabra12G0032700 Salix brachista HOM05D003616 ORTHO05D004289 7.7e-60 234.2 207 60.9
BcaC03g16480 Brassica carinata HOM05D003616 ORTHO05D004289 1.0e-59 233.8 198 61.1
A02p27080 Brassica napus HOM05D003616 ORTHO05D004289 1.0e-59 233.8 198 61.1
C02p42910 Brassica napus HOM05D003616 ORTHO05D004289 1.0e-59 233.8 198 61.1
BolC2t10330H Brassica oleracea HOM05D003616 ORTHO05D004289 1.0e-59 233.8 198 61.1
BraA02t07726Z Brassica rapa HOM05D003616 ORTHO05D004289 1.0e-59 233.8 198 61.1
MELO3C017361.2 Cucumis melo HOM05D003616 ORTHO05D004289 1.0e-59 233.8 201 60.7
Gohir.A03G092600 Gossypium hirsutum HOM05D003616 ORTHO05D004289 1.0e-59 233.8 204 60.3
Rhsim06G0018600 Rhododendron simsii HOM05D003616 ORTHO05D004289 1.0e-59 233.8 197 63.5
CANSAT80G0515 Cannabis sativa HOM05D003616 ORTHO05D004289 1.3e-59 233.4 199 62.3
Ca_25333_v3 Cicer arietinum L. HOM05D003616 ORTHO05D004289 1.7e-59 233.0 204 59.8
Medtr6g069420 Medicago truncatula HOM05D003616 ORTHO05D004289 1.7e-59 233.0 206 59.7
Glyma.07G102200 Glycine max HOM05D003616 ORTHO05D004289 2.2e-59 232.6 203 61.1
PSO170G1220 Papaver somniferum HOM05D003616 ORTHO05D004289 2.2e-59 232.6 200 62.0
PSO700G0251 Papaver somniferum HOM05D003616 ORTHO05D004289 2.2e-59 232.6 200 61.5
Zm00001eb086680 Zea mays HOM05D003616 ORTHO05D004289 2.2e-59 232.6 228 53.9
FAN08G3458 Fragaria x ananassa HOM05D003616 ORTHO05D004289 3.8e-59 231.9 206 59.7
RcHm_v2.0_Chr7g0178351 Rosa chinensis HOM05D003616 ORTHO05D004289 3.8e-59 231.9 206 59.2
SGA_v2.0_scaffold25G11209 Striga asiatica HOM05D003616 ORTHO05D004289 5.0e-59 231.5 219 57.5
Aa31LG9G12310 Aethionema arabicum HOM05D003616 ORTHO05D004289 8.5e-59 230.7 198 60.6
Gohir.D02G121200 Gossypium hirsutum HOM05D003616 ORTHO05D004289 8.5e-59 230.7 204 59.8
Gorai.005G133000 Gossypium raimondii HOM05D003616 ORTHO05D004289 8.5e-59 230.7 204 59.8
Glyma.09G177000 Glycine max HOM05D003616 ORTHO05D004289 1.4e-58 229.9 203 60.1
Lj2g0015525 Lotus japonicus HOM05D003616 ORTHO05D004289 1.4e-58 229.9 204 59.8
HPP92_015015 Vanilla planifolia HOM05D003616 ORTHO05D004289 1.4e-58 229.9 197 60.4
Sed0005025 Sechium edule HOM05D003616 ORTHO05D004289 1.9e-58 229.6 202 58.9
Psat1g033600 Pisum sativum HOM05D003616 ORTHO05D004289 2.5e-58 229.2 204 59.3
arahy.Tifrunner.gnm1.ann1.0SP0C0 Arachis hypogaea HOM05D003616 ORTHO05D004289 3.2e-58 228.8 201 60.7
arahy.Tifrunner.gnm1.ann1.YQ88M5 Arachis hypogaea HOM05D003616 ORTHO05D004289 3.2e-58 228.8 201 60.7
HanXRQChr14g0455291 Helianthus annuus HOM05D003616 ORTHO05D004289 3.2e-58 228.8 204 59.3
THA.LOC104798670 Tarenaya hassleriana HOM05D003616 ORTHO05D004289 3.2e-58 228.8 198 60.6
unitig_748.g7720 Utricularia gibba HOM05D003616 ORTHO05D004289 4.2e-58 228.4 195 60.5
ATR0180G023 Amborella trichopoda HOM05D003616 ORTHO05D004289 7.2e-58 227.6 201 59.2
ClCG06G014280 Citrullus lanatus HOM05D003616 ORTHO05D004289 7.2e-58 227.6 201 58.7
FAN04G2471 Fragaria x ananassa HOM05D003616 ORTHO05D004289 7.2e-58 227.6 206 59.2
FAN18G4023 Fragaria x ananassa HOM05D003616 ORTHO05D004289 7.2e-58 227.6 206 59.2
MD14G1236600 Malus domestica HOM05D003616 ORTHO05D004289 9.4e-58 227.3 201 60.2
Phvul.004G150900 Phaseolus vulgaris HOM05D003616 ORTHO05D004289 2.1e-57 226.1 203 59.1
DCAR_003546 Daucus carota HOM05D003616 ORTHO05D004289 2.7e-57 225.7 201 58.7
Lalb_Chr14g0370571 Lupinus albus HOM05D003616 ORTHO05D004289 6.1e-57 224.6 201 59.2
VMungo0464G1067 Vigna mungo HOM05D003616 ORTHO05D004289 6.1e-57 224.6 201 59.2
Lsat_1_v5_gn_2_108180 Lactuca sativa HOM05D003616 ORTHO05D004289 1.4e-56 223.4 201 58.7
Sed0021008 Sechium edule HOM05D003616 ORTHO05D004289 1.8e-56 223.0 198 59.1
vmacro07569 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 3.9e-56 221.9 234 54.7
FvH4_5g17390 Fragaria vesca HOM05D003616 ORTHO05D004289 2.6e-55 219.2 197 58.4
ClCG08G014130 Citrullus lanatus HOM05D003616 ORTHO05D004289 3.3e-55 218.8 198 59.6
Eucgr.H00955 Eucalyptus grandis HOM05D003616 ORTHO05D004289 3.3e-55 218.8 196 58.7
Lj5A158G70 Lonicera japonica HOM05D003616 ORTHO05D004289 9.7e-55 217.2 239 53.1
SEGI_35058 Sequoiadendron giganteum HOM05D003616 ORTHO05D004289 1.1e-53 213.8 196 56.6
Ah.11g040000 Amaranthus hybridus HOM05D003616 ORTHO05D004289 4.1e-53 211.8 186 59.7
ATR0626G339 Amborella trichopoda HOM05D003616 ORTHO05D004289 6.9e-53 211.1 200 54.0
Pp3c22_13980 Physcomitrium patens HOM05D003616 ORTHO05D004289 1.7e-51 206.5 203 52.7
Mapoly0126s0030 Marchantia polymorpha HOM05D003616 ORTHO05D004289 3.8e-51 205.3 199 53.3
Oeu007366.1 Olea europaea HOM05D003616 ORTHO05D004289 5.0e-51 204.9 200 55.5
SMO140G0111 Selaginella moellendorffii HOM05D003616 ORTHO05D004289 3.6e-49 198.7 225 48.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 3.0e-48 195.7 151 64.9
CBR_g28548 Chara braunii HOM05D003616 ORTHO05D004289 1.1e-47 193.7 197 51.3
Pp3c19_15500 Physcomitrium patens HOM05D003616 ORTHO05D004289 1.7e-46 189.9 203 49.3
Lsat_1_v5_gn_8_25101 Lactuca sativa HOM05D003616 ORTHO05D004289 2.2e-46 189.5 181 56.4
Prupe.5G233700 Prunus persica HOM05D003616 ORTHO05D004289 4.8e-46 188.3 170 60.0
Dinv17550 Davidia involucrata HOM05D003616 ORTHO05D004289 5.3e-45 184.9 170 58.8
VMungo1309G0063 Vigna mungo HOM05D003616 ORTHO05D004289 1.0e-43 180.6 180 51.7
Lalb_Chr22g0353551 Lupinus albus HOM05D003616 ORTHO05D004289 7.2e-42 174.5 161 57.8
VMungo1309G1258 Vigna mungo HOM05D003616 ORTHO05D004289 4.7e-41 171.8 181 50.3
Lj9A420T36 Lonicera japonica HOM05D003616 ORTHO05D004289 2.0e-36 156.4 149 57.0
Nn3g18380 Nelumbo nucifera HOM05D003616 ORTHO05D004289 1.0e-32 144.1 197 44.7
Sabra15G0037200 Salix brachista HOM05D003616 ORTHO05D004289 1.3e-30 137.1 88 75.0
Oeu010273.1 Olea europaea HOM05D003616 ORTHO05D004289 1.7e-30 136.7 97 69.1
vmacro17781 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 8.3e-30 134.4 87 75.9
PRCOL_00004876 Prasinoderma coloniale HOM05D003616 ORTHO05D004289 4.1e-29 132.1 215 37.7
MCO10G259 Micromonas commoda HOM05D003616 ORTHO05D004289 3.8e-27 125.6 207 39.1
Sc10g0009170 Simmondsia chinensis HOM05D003616 ORTHO05D004289 5.0e-27 125.2 96 66.7
TPR.G243 Trifolium pratense HOM05D003616 ORTHO05D004289 8.6e-27 124.4 107 60.7
Actinidia17002 Actinidia chinensis HOM05D003616 ORTHO05D004289 2.8e-22 109.4 85 64.7
TPR.G38175 Trifolium pratense HOM05D003616 ORTHO05D004289 8.3e-22 107.8 68 72.1
Oeu051168.1 Olea europaea HOM05D003616 ORTHO05D004289 6.6e-19 98.2 91 58.2
Cre07.g319100 Chlamydomonas reinhardtii HOM05D003616 ORTHO05D004289 1.8e-16 90.1 266 28.2
vmacro17780 Vaccinium macrocarpon HOM05D003616 ORTHO05D004289 6.8e-16 88.2 76 57.9
Sabra15G0037100 Salix brachista HOM05D003616 ORTHO05D004289 2.7e-12 76.3 64 60.9
Prupe.1G007300 Prunus persica HOM05D003616 ORTHO05D335316 6.0e-12 75.1 99 42.4


User provided reference genes

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