Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1003400 Malus domestica HOM05D006241 ORTHO05D007842 4.8e-30 133.7 59 100.0
MD08G1003800 Malus domestica HOM05D006241 ORTHO05D007842 3.1e-29 131.0 59 98.3
RcHm_v2.0_Chr6g0304101 Rosa chinensis HOM05D006241 ORTHO05D007842 6.7e-24 113.2 54 83.3
FAN20G1861 Fragaria x ananassa HOM05D006241 ORTHO05D007842 8.7e-24 112.8 51 90.2
FvH4_2g37630 Fragaria vesca HOM05D006241 ORTHO05D007842 4.3e-23 110.5 50 90.0
Prupe.1G355800 Prunus persica HOM05D006241 ORTHO05D007842 4.3e-23 110.5 50 92.0
FAN15G0812 Fragaria x ananassa HOM05D006241 ORTHO05D007842 9.7e-23 109.4 50 88.0
CiPaw.07G140100 Carya illinoinensis HOM05D006241 ORTHO05D007842 2.2e-22 108.2 50 90.0
SGA_v2.0_scaffold25G11191 Striga asiatica HOM05D006241 ORTHO05D007842 2.2e-22 108.2 50 86.0
VMungo1127G1075 Vigna mungo HOM05D006241 ORTHO05D007842 2.8e-22 107.8 49 87.8
Cfa014051 Carpinus fangiana HOM05D006241 ORTHO05D007842 3.7e-22 107.5 50 88.0
arahy.Tifrunner.gnm1.ann1.1F1YZI Arachis hypogaea HOM05D006241 ORTHO05D007842 4.8e-22 107.1 50 86.0
arahy.Tifrunner.gnm1.ann1.1NSU2H Arachis hypogaea HOM05D006241 ORTHO05D007842 4.8e-22 107.1 50 86.0
arahy.Tifrunner.gnm1.ann1.4R2MNP Arachis hypogaea HOM05D006241 ORTHO05D007842 4.8e-22 107.1 50 86.0
arahy.Tifrunner.gnm1.ann1.L8CN1K Arachis hypogaea HOM05D006241 ORTHO05D007842 4.8e-22 107.1 50 86.0
Nitab4.5_0000588g0230 Nicotiana tabacum HOM05D006241 ORTHO05D007842 4.8e-22 107.1 49 85.7
CiPaw.08G071900 Carya illinoinensis HOM05D006241 ORTHO05D007842 6.3e-22 106.7 50 88.0
Migut.N03197 Erythranthe guttata HOM05D006241 ORTHO05D007842 6.3e-22 106.7 50 84.0
TWI12G0416 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 8.2e-22 106.3 49 87.8
CARHR069760 Cardamine hirsuta HOM05D006241 ORTHO05D007842 1.4e-21 105.5 50 84.0
Glyma.11G099500 Glycine max HOM05D006241 ORTHO05D007842 1.4e-21 105.5 50 84.0
CAN.G311.105 Capsicum annuum HOM05D006241 ORTHO05D007842 1.8e-21 105.1 50 82.0
Manes.05G136000 Manihot esculenta HOM05D006241 ORTHO05D007842 2.4e-21 104.8 50 84.0
TWI56G0163 Tripterygium wilfordii HOM05D006241 ORTHO05D007842 2.4e-21 104.8 49 83.7
Atru.chr13.161 Acer truncatum HOM05D006241 ORTHO05D007842 3.1e-21 104.4 51 82.4
PGSC0003DMG400009898 Solanum tuberosum HOM05D006241 ORTHO05D007842 3.1e-21 104.4 50 84.0
Glyma.12G025500 Glycine max HOM05D006241 ORTHO05D007842 4.1e-21 104.0 50 82.0
Manes.18G006720 Manihot esculenta HOM05D006241 ORTHO05D007842 4.1e-21 104.0 50 82.0
Sabra05G0192000 Salix brachista HOM05D006241 ORTHO05D007842 4.1e-21 104.0 50 84.0
Lj3g0010530 Lotus japonicus HOM05D006241 ORTHO05D007842 5.3e-21 103.6 50 84.0
Potri.002G012700 Populus trichocarpa HOM05D006241 ORTHO05D007842 5.3e-21 103.6 50 82.0
QL02p013848 Quercus lobata HOM05D006241 ORTHO05D007842 5.3e-21 103.6 50 84.0
Aa31LG4G6300 Aethionema arabicum HOM05D006241 ORTHO05D007842 6.9e-21 103.2 50 82.0
Potri.005G248600 Populus trichocarpa HOM05D006241 ORTHO05D007842 6.9e-21 103.2 50 82.0
CANSAT54G0965 Cannabis sativa HOM05D006241 ORTHO05D007842 9.0e-21 102.8 50 82.0
MELO3C017010.2 Cucumis melo HOM05D006241 ORTHO05D007842 9.0e-21 102.8 49 81.6
Gohir.A01G107600 Gossypium hirsutum HOM05D006241 ORTHO05D007842 9.0e-21 102.8 50 82.0
AL2G36270 Arabidopsis lyrata HOM05D006241 ORTHO05D007842 2.0e-20 101.7 49 81.6
AT1G76200 Arabidopsis thaliana HOM05D006241 ORTHO05D007842 2.0e-20 101.7 49 81.6
CsaV3_4G037120 Cucumis sativus L. HOM05D006241 ORTHO05D007842 2.0e-20 101.7 49 81.6
PGR031G1817 Punica granatum HOM05D006241 ORTHO05D007842 2.0e-20 101.7 49 83.7
Ca_19011_v3 Cicer arietinum L. HOM05D006241 ORTHO05D007842 2.6e-20 101.3 49 81.6
Cc10_g00830 Coffea canephora HOM05D006241 ORTHO05D007842 2.6e-20 101.3 49 81.6
THA.LOC104811457 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.4e-20 100.9 50 80.0
THA.LOC109116669 Tarenaya hassleriana HOM05D006241 ORTHO05D007842 3.4e-20 100.9 50 78.0
Duzib116G0823 Durio zibethinus HOM05D006241 ORTHO05D007842 4.5e-20 100.5 50 80.0
Psat7g177480 Pisum sativum HOM05D006241 ORTHO05D007842 4.5e-20 100.5 51 80.4
CSS0008517 Camellia sinensis var. sinensis HOM05D006241 ORTHO05D007842 5.9e-20 100.1 53 81.1
COL.COLO4_21601 Corchorus olitorius HOM05D006241 ORTHO05D007842 5.9e-20 100.1 49 81.6
Gohir.D01G094000 Gossypium hirsutum HOM05D006241 ORTHO05D007842 5.9e-20 100.1 50 80.0
Gorai.002G119300 Gossypium raimondii HOM05D006241 ORTHO05D007842 5.9e-20 100.1 50 80.0
PSO357G0248 Papaver somniferum HOM05D006241 ORTHO05D007842 5.9e-20 100.1 49 79.6
Gorai.009G189100 Gossypium raimondii HOM05D006241 ORTHO05D007842 7.7e-20 99.8 50 80.0
TAR376G1175 Trochodendron aralioides HOM05D006241 ORTHO05D007842 7.7e-20 99.8 48 83.3
PSO170G5266 Papaver somniferum HOM05D006241 ORTHO05D007842 1.0e-19 99.4 49 79.6
Actinidia17033 Actinidia chinensis HOM05D006241 ORTHO05D007842 1.3e-19 99.0 48 79.2
Gohir.A05G180800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 1.3e-19 99.0 50 78.0
HanXRQChr17g0555751 Helianthus annuus HOM05D006241 ORTHO05D007842 1.3e-19 99.0 61 73.8
Thecc.08G056300 Theobroma cacao HOM05D006241 ORTHO05D007842 1.3e-19 99.0 50 78.0
Aqoxy6G01804 Aquilegia oxysepala HOM05D006241 ORTHO05D007842 1.7e-19 98.6 49 79.6
Dinv39579 Davidia involucrata HOM05D006241 ORTHO05D007842 1.7e-19 98.6 53 77.4
Duzib093G0667 Durio zibethinus HOM05D006241 ORTHO05D007842 2.2e-19 98.2 50 78.0
Duzib041G0756 Durio zibethinus HOM05D006241 ORTHO05D007842 2.9e-19 97.8 50 76.0
Gohir.D05G183800 Gossypium hirsutum HOM05D006241 ORTHO05D007842 2.9e-19 97.8 50 78.0
Phvul.011G027800 Phaseolus vulgaris HOM05D006241 ORTHO05D007842 2.9e-19 97.8 48 77.1
Lsat_1_v5_gn_8_133721 Lactuca sativa HOM05D006241 ORTHO05D007842 6.5e-19 96.7 49 79.6
Actinidia15484 Actinidia chinensis HOM05D006241 ORTHO05D007842 8.5e-19 96.3 48 77.1
HanXRQChr17g0554651 Helianthus annuus HOM05D006241 ORTHO05D007842 8.5e-19 96.3 51 78.4
TAR381G1678 Trochodendron aralioides HOM05D006241 ORTHO05D007842 8.5e-19 96.3 48 81.2
Eucgr.F01733 Eucalyptus grandis HOM05D006241 ORTHO05D007842 1.1e-18 95.9 49 77.6
Ciclev10010113m.g Citrus clementina HOM05D006241 ORTHO05D007842 1.9e-18 95.1 49 75.5
Thhalv10019410m.g Eutrema salsugineum HOM05D006241 ORTHO05D007842 1.9e-18 95.1 50 80.0
Hund08526 Selenicereus undatus HOM05D006241 ORTHO05D007842 3.2e-18 94.4 55 76.4
Carub.0002s2310 Capsella rubella HOM05D006241 ORTHO05D007842 4.2e-18 94.0 50 78.0
Dinv31923 Davidia involucrata HOM05D006241 ORTHO05D007842 4.2e-18 94.0 48 77.1
Sp5g31350 Schrenkiella parvula HOM05D006241 ORTHO05D007842 4.2e-18 94.0 50 78.0
Lalb_Chr17g0337811 Lupinus albus HOM05D006241 ORTHO05D007842 5.5e-18 93.6 52 73.1
Cpa.g.sc222.6 Carica papaya HOM05D006241 ORTHO05D007842 7.2e-18 93.2 49 75.5
Nn5g30908 Nelumbo nucifera HOM05D006241 ORTHO05D007842 7.2e-18 93.2 48 77.1
BcaB02g07055 Brassica carinata HOM05D006241 ORTHO05D007842 9.4e-18 92.8 50 76.0
BcaB05g24973 Brassica carinata HOM05D006241 ORTHO05D007842 1.6e-17 92.0 47 76.6
ECA248G1104 Erigeron canadensis HOM05D006241 ORTHO05D007842 3.6e-17 90.9 53 73.6
Lalb_Chr10g0094931 Lupinus albus HOM05D006241 ORTHO05D007842 3.6e-17 90.9 54 68.5
MBI19_g43741_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 3.6e-17 90.9 46 76.1
BcaC08g47115 Brassica carinata HOM05D006241 ORTHO05D007842 4.6e-17 90.5 50 74.0
BcaC08g47119 Brassica carinata HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
BcaC08g47281 Brassica carinata HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
A07p41770 Brassica napus HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
C06p50150 Brassica napus HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
BolC6t40055H Brassica oleracea HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
BraA07t31707Z Brassica rapa HOM05D006241 ORTHO05D007842 4.6e-17 90.5 47 74.5
BraA07t30500Z Brassica rapa HOM05D006241 ORTHO05D007842 7.9e-17 89.7 50 74.0
ATR0661G361 Amborella trichopoda HOM05D006241 ORTHO05D007842 1.8e-16 88.6 49 69.4
A07p28590 Brassica napus HOM05D006241 ORTHO05D007842 3.0e-16 87.8 50 72.0
CDE05G0950 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.0e-16 87.8 49 67.3
CDE05G1511 Ceratophyllum demersum HOM05D006241 ORTHO05D007842 3.0e-16 87.8 49 67.3
BolC2t09367H Brassica oleracea HOM05D006241 ORTHO05D007842 3.9e-16 87.4 50 72.0
BraA02t07081Z Brassica rapa HOM05D006241 ORTHO05D007842 6.7e-16 86.7 50 72.0
Os05g0122900 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 6.7e-16 86.7 49 71.4
BcaC08g45539 Brassica carinata HOM05D006241 ORTHO05D007842 8.8e-16 86.3 48 68.8
C06p32170 Brassica napus HOM05D006241 ORTHO05D007842 8.8e-16 86.3 48 68.8
BolC6t38340H Brassica oleracea HOM05D006241 ORTHO05D007842 8.8e-16 86.3 48 68.8
SalBow6G4847 Salvia bowleyana HOM05D006241 ORTHO05D007842 8.8e-16 86.3 51 74.5
HPP92_021050 Vanilla planifolia HOM05D006241 ORTHO05D007842 1.1e-15 85.9 51 68.6
AagrBONN_evm.TU.Sc2ySwM_117.850 Anthoceros agrestis HOM05D006241 ORTHO05D007842 2.5e-15 84.7 53 62.3
Zm00001eb294120 Zea mays HOM05D006241 ORTHO05D007842 1.8e-13 78.6 49 67.3
Zm00001eb356460 Zea mays HOM05D006241 ORTHO05D007842 1.8e-13 78.6 49 67.3
GSVIVG01008691001 Vitis vinifera HOM05D006241 ORTHO05D007842 5.3e-13 77.0 35 80.0
DCAR_013903 Daucus carota HOM05D006241 ORTHO05D007842 9.1e-13 76.3 64 56.2
Pp3c21_21340 Physcomitrium patens HOM05D006241 ORTHO05D007842 1.5e-12 75.5 50 62.0
Pp3c18_1920 Physcomitrium patens HOM05D006241 ORTHO05D007842 7.7e-12 73.2 50 60.0
Sabra07G0051400 Salix brachista HOM05D006241 ORTHO05D349851 1.0e-11 72.8 50 62.0
ClCG05G015200 Citrullus lanatus HOM05D006241 ORTHO05D007842 3.8e-11 70.9 34 79.4
Mapoly0108s0047 Marchantia polymorpha HOM05D006241 ORTHO05D007842 3.8e-11 70.9 50 56.0
Sed0002381 Sechium edule HOM05D006241 ORTHO05D007842 3.8e-11 70.9 34 76.5
Mapoly0103s0030 Marchantia polymorpha HOM05D006241 ORTHO05D007842 5.0e-11 70.5 50 54.0
Os06g0725400 Oryza sativa ssp. japonica HOM05D006241 ORTHO05D007842 5.0e-11 70.5 50 64.0
Nn6g31777 Nelumbo nucifera HOM05D006241 ORTHO05D007842 1.1e-10 69.3 41 70.7
Medtr4g075160 Medicago truncatula HOM05D006241 ORTHO05D007842 1.9e-10 68.6 38 73.7
unitig_746.g26818 Utricularia gibba HOM05D003604 ORTHO05D000209 2.5e-10 68.2 32 78.1
AUR62015196 Chenopodium quinoa HOM05D006241 ORTHO05D007842 3.2e-10 67.8 36 75.0
AUR62017658 Chenopodium quinoa HOM05D006241 ORTHO05D007842 3.2e-10 67.8 36 75.0
Ah.01g013010 Amaranthus hybridus HOM05D006241 ORTHO05D007842 5.5e-10 67.0 36 75.0
Ah.01g001690 Amaranthus hybridus HOM05D006241 ORTHO05D007842 9.4e-10 66.2 36 72.2
DCAR_016755 Daucus carota HOM05D006241 ORTHO05D007842 1.6e-09 65.5 32 75.0
MBI19_g35281_MAGBIO Magnolia biondii HOM05D006241 ORTHO05D007842 4.7e-09 63.9 33 69.7
MCO07G568 Micromonas commoda HOM05D006241 ORTHO05D007842 1.3e-06 55.8 50 44.0


User provided reference genes

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