Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 1.3e-212 742.7 351 100.0
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 5.7e-147 524.6 253 94.9
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 1.3e-127 460.3 251 83.7
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 4.0e-124 448.7 250 81.2
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 8.9e-124 447.6 250 82.0
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 4.9e-122 441.8 250 80.8
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 5.4e-121 438.3 250 79.6
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 9.2e-121 437.6 250 76.8
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 1.7e-119 433.3 250 76.8
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 8.6e-119 431.0 251 76.9
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 1.9e-118 429.9 250 76.8
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 1.2e-117 427.2 251 75.7
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 2.1e-117 426.4 250 76.4
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 4.7e-117 425.2 250 75.6
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 1.4e-116 423.7 251 74.9
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.2e-116 421.8 250 76.0
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 8.9e-116 421.0 250 74.4
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.5e-115 420.2 250 74.8
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.4e-115 419.1 250 72.4
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 4.4e-115 418.7 250 74.4
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 1.3e-114 417.2 250 73.6
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 2.9e-114 416.0 250 76.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 3.7e-114 415.6 251 74.1
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 1.9e-113 413.3 251 74.5
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.9e-113 413.3 250 74.0
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 2.4e-113 412.9 250 74.4
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 2.4e-113 412.9 251 72.9
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 3.2e-113 412.5 251 73.7
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 5.4e-113 411.8 250 73.6
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 5.4e-113 411.8 250 74.0
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 9.2e-113 411.0 250 72.0
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 3.5e-112 409.1 252 71.8
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.5e-112 409.1 251 73.7
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 4.6e-112 408.7 250 73.2
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 4.6e-112 408.7 250 73.2
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 1.3e-111 407.1 251 72.1
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 2.3e-111 406.4 250 72.8
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.0e-111 406.0 251 72.9
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 6.6e-111 404.8 250 73.6
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 8.6e-111 404.4 250 71.6
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 8.6e-111 404.4 250 73.6
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.1e-110 404.1 251 72.5
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 1.5e-110 403.7 252 71.0
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 1.9e-110 403.3 250 71.6
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.9e-110 403.3 251 70.5
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 2.5e-110 402.9 251 72.1
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 5.6e-110 401.7 251 71.7
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 5.6e-110 401.7 251 70.5
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 7.3e-110 401.4 251 70.1
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.2e-109 400.6 251 71.3
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 1.2e-109 400.6 250 71.6
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.2e-109 400.6 250 71.6
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 1.6e-109 400.2 251 72.9
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.6e-109 400.2 250 71.6
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 2.8e-109 399.4 250 71.2
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 4.7e-109 398.7 251 70.5
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 6.2e-109 398.3 251 70.9
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 8.1e-109 397.9 250 70.8
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.1e-108 397.5 250 71.6
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.1e-108 397.5 250 71.6
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.4e-108 397.1 250 70.0
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.8e-108 396.7 250 70.4
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 3.1e-108 396.0 250 70.4
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 4.0e-108 395.6 250 70.4
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 4.0e-108 395.6 250 72.0
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 6.8e-108 394.8 248 70.6
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 6.8e-108 394.8 250 70.4
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 8.9e-108 394.4 250 71.2
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.5e-107 393.7 251 69.3
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 2.6e-107 392.9 250 70.4
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.4e-107 392.5 250 68.8
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 3.4e-107 392.5 250 69.2
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 4.4e-107 392.1 250 70.8
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 4.4e-107 392.1 251 69.3
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 5.8e-107 391.7 250 70.8
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 5.8e-107 391.7 250 70.8
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 5.8e-107 391.7 250 70.8
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 3.8e-106 389.0 250 70.4
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 4.9e-106 388.7 251 68.9
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 4.9e-106 388.7 250 69.6
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 8.4e-106 387.9 236 72.9
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 1.4e-105 387.1 251 68.5
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.4e-105 387.1 246 69.9
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 2.4e-105 386.3 251 66.9
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.4e-105 386.3 250 69.2
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 3.2e-105 386.0 250 68.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 3.2e-105 386.0 310 61.0
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 4.2e-105 385.6 250 68.8
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 5.4e-105 385.2 250 68.4
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 7.1e-105 384.8 276 63.8
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 9.3e-105 384.4 250 68.8
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 1.2e-104 384.0 250 69.6
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 1.2e-104 384.0 276 63.4
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.2e-104 384.0 310 60.0
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 3.5e-104 382.5 276 63.4
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 7.8e-104 381.3 250 68.4
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 2.3e-103 379.8 276 62.7
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 2.3e-103 379.8 276 62.7
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 2.3e-103 379.8 276 62.7
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 2.3e-103 379.8 250 69.2
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.1e-103 378.6 248 68.1
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 5.1e-103 378.6 251 69.3
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.5e-102 377.1 250 67.6
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 4.3e-102 375.6 250 65.6
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 5.6e-102 375.2 250 68.4
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.6e-102 375.2 250 68.8
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 7.3e-102 374.8 252 66.3
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 2.1e-101 373.2 250 66.4
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 2.8e-101 372.9 250 65.6
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 3.6e-101 372.5 221 76.9
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 4.8e-101 372.1 251 68.9
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 8.1e-101 371.3 250 67.2
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 1.4e-100 370.5 274 65.0
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 5.3e-100 368.6 251 65.3
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 5.3e-100 368.6 250 66.0
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 1.5e-99 367.1 250 65.6
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 2.0e-99 366.7 250 66.4
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 2.6e-99 366.3 251 64.5
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 2.6e-99 366.3 251 65.7
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 3.4e-99 365.9 250 66.4
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 4.4e-99 365.5 250 65.2
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 4.9e-98 362.1 251 67.3
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 6.4e-98 361.7 255 66.3
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 2.4e-97 359.8 254 65.0
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 5.4e-97 358.6 261 64.4
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 7.1e-97 358.2 254 66.9
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 9.3e-97 357.8 250 67.2
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.6e-96 357.1 251 66.5
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 4.6e-96 355.5 250 64.8
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.3e-95 354.0 254 63.4
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 2.3e-95 353.2 250 66.4
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 3.0e-95 352.8 251 65.3
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 3.9e-95 352.4 236 67.4
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 3.9e-95 352.4 253 61.3
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 4.3e-94 349.0 250 65.2
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 9.6e-94 347.8 251 64.1
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.6e-93 345.9 250 59.6
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.8e-92 343.6 236 64.4
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 4.0e-92 342.4 250 60.8
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 1.5e-91 340.5 251 61.8
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 9.3e-89 331.3 254 60.2
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.6e-88 330.5 220 71.4
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.2e-85 318.5 250 56.8
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 5.3e-84 315.5 254 57.9
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 1.5e-83 313.9 236 58.1
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.9e-78 297.0 253 56.1
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 9.6e-78 294.7 253 55.7
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 9.0e-76 288.1 251 53.0
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-74 284.3 249 51.4
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 8.4e-74 281.6 201 61.7
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.0e-71 274.6 252 52.4
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 2.3e-71 273.5 250 50.0
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 5.1e-71 272.3 244 51.2
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 7.4e-70 268.5 236 50.8
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 1.4e-68 264.2 253 51.4
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.5e-66 255.4 252 47.2
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 1.9e-65 253.8 255 49.4
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 9.4e-65 251.5 257 47.5
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.1e-64 250.4 251 47.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 1.4e-63 247.7 257 49.4
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.5e-58 228.4 261 43.3
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.1e-54 218.0 250 42.4
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 3.7e-53 213.0 256 40.6
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.4e-52 210.3 242 44.6
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.5e-51 207.6 310 35.5
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.9e-50 203.4 311 37.0
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.2e-48 198.0 309 38.2
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.7e-47 192.2 260 39.2
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 2.4e-44 183.7 139 66.2
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 9.1e-44 181.8 149 61.1
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 6.5e-42 175.6 258 36.8
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 3.0e-23 113.6 79 64.6
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 6.8e-23 112.5 100 50.0
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.6e-22 110.5 82 56.1
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 7.0e-20 102.4 119 39.5
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 1.9e-17 94.4 76 50.0
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.8e-16 90.5 86 46.5


User provided reference genes

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