Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 8.7e-185 650.2 338 100.0
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 4.2e-147 525.0 337 77.7
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.5e-131 472.6 338 70.4
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 8.8e-129 464.2 339 68.4
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.0e-128 463.0 337 70.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 4.9e-127 458.4 337 68.2
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 4.9e-127 458.4 337 68.2
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 4.9e-127 458.4 346 67.3
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 4.9e-127 458.4 337 68.8
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 6.3e-127 458.0 337 69.4
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 7.0e-126 454.5 337 71.8
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.6e-125 453.4 345 68.1
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 5.9e-125 451.4 339 67.0
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 1.7e-124 449.9 337 68.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.7e-124 449.9 337 68.8
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 2.9e-124 449.1 340 68.2
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.9e-124 449.1 338 68.6
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 8.6e-124 447.6 360 65.3
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 8.6e-124 447.6 341 67.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.1e-123 447.2 337 67.4
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.1e-123 447.2 343 68.2
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.5e-123 446.0 338 67.5
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 3.3e-123 445.7 336 67.0
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.6e-123 444.9 337 67.4
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.2e-122 443.7 338 66.9
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.2e-122 443.7 339 67.6
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.1e-122 443.0 336 66.7
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 3.6e-122 442.2 338 66.6
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.3e-121 439.5 337 67.1
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 4.0e-121 438.7 338 66.6
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 5.2e-121 438.3 337 65.6
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.6e-120 436.0 344 66.9
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.6e-120 436.0 337 65.9
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.6e-120 436.0 364 62.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 3.4e-120 435.6 339 66.1
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 7.5e-120 434.5 337 65.6
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.7e-119 433.3 339 65.2
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 3.7e-119 432.2 336 65.8
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.7e-119 432.2 337 65.0
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 3.7e-119 432.2 337 64.1
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.1e-118 430.6 337 70.9
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.8e-118 429.9 332 65.1
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 7.0e-118 427.9 337 65.3
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 1.2e-117 427.2 384 60.2
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.6e-117 426.8 338 66.3
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 2.0e-117 426.4 337 65.0
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 8.6e-116 421.0 350 64.0
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 2.5e-115 419.5 342 62.0
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 3.6e-114 415.6 263 77.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 4.7e-114 415.2 336 65.5
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.4e-113 413.7 383 58.2
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.3e-113 412.9 340 65.6
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.1e-113 412.5 338 63.0
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 3.1e-113 412.5 388 58.0
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 6.8e-113 411.4 338 61.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 1.2e-112 410.6 337 63.5
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 3.4e-112 409.1 337 67.7
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 9.8e-112 407.5 359 60.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.9e-111 406.0 354 59.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 4.9e-111 405.2 375 61.9
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 2.4e-110 402.9 343 61.5
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 5.4e-110 401.7 378 58.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 1.2e-109 400.6 275 71.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-109 400.6 315 67.0
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 2.0e-109 399.8 344 62.8
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.0e-109 399.8 275 71.3
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 2.0e-109 399.8 382 56.0
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.5e-109 399.1 340 60.9
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.0e-109 398.3 275 70.9
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 1.7e-108 396.7 359 59.6
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 8.6e-108 394.4 335 60.9
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 8.6e-108 394.4 386 56.2
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.1e-107 394.0 252 75.8
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 4.3e-107 392.1 382 58.6
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 1.8e-105 386.7 343 57.7
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.3e-105 386.3 387 55.6
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 1.7e-103 380.2 339 57.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.2e-103 379.8 351 55.3
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 7.1e-102 374.8 357 58.8
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 6.0e-101 371.7 352 57.7
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 1.3e-100 370.5 295 63.7
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.3e-100 369.8 373 55.0
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 3.9e-100 369.0 300 62.3
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 5.1e-100 368.6 246 73.2
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.2e-98 364.0 348 56.0
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.2e-98 364.0 269 65.8
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 2.0e-96 356.7 223 75.3
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 5.8e-96 355.1 339 53.7
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-95 353.6 207 79.2
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-95 353.2 208 78.8
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 2.9e-95 352.8 481 44.9
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.8e-95 352.4 340 53.5
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 8.4e-95 351.3 341 53.1
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 8.4e-95 351.3 297 60.9
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.2e-93 347.4 340 52.9
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 1.3e-92 344.0 317 55.8
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 3.0e-92 342.8 338 52.4
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 3.9e-92 342.4 251 65.7
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 9.6e-91 337.8 359 52.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 1.2e-88 330.9 342 51.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.1e-86 324.3 336 50.6
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 1.1e-86 324.3 261 58.2
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 6.6e-84 315.1 384 48.7
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 2.1e-82 310.1 336 52.4
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 2.8e-82 309.7 339 48.4
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 2.8e-82 309.7 339 48.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.1e-81 307.8 336 52.4
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.1e-81 307.8 348 47.1
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 1.8e-81 307.0 339 48.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 3.1e-81 306.2 336 52.1
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.0e-80 303.5 336 52.4
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 2.9e-79 299.7 337 47.8
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.8e-79 299.3 268 59.0
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 8.4e-79 298.1 336 48.2
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 5.4e-78 295.4 253 61.3
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 3.1e-73 279.6 171 78.4
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.2e-69 267.7 259 50.2
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 3.9e-68 262.7 159 76.1
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.3e-66 257.7 167 72.5
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.1e-65 254.6 171 69.0
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.3e-59 233.0 221 52.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.3e-58 228.8 355 38.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.2e-56 224.6 151 72.8
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.0e-55 221.5 148 73.6
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.2e-48 198.0 201 56.2
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.7e-44 182.2 113 77.0
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 4.1e-41 172.9 122 71.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.0e-39 168.3 118 68.6
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 2.3e-36 157.1 244 38.9
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.1e-33 145.2 98 72.4
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 4.7e-29 132.9 80 76.2
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 2.7e-21 107.1 140 47.1
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.0e-19 100.9 59 66.1
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 4.4e-19 99.8 136 44.1
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 5.9e-16 89.4 87 54.0
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 4.2e-14 83.2 86 50.0
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 2.3e-12 77.4 45 73.3
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-11 73.6 55 72.7
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 9.8e-11 72.0 371 21.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 1.7e-10 71.2 48 66.7


User provided reference genes

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