Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1241700 Malus domestica HOM05D002366 ORTHO05D002499 2.5e-98 362.1 182 100.0
Prupe.5G239200 Prunus persica HOM05D002366 ORTHO05D002499 1.7e-49 199.9 188 60.1
RcHm_v2.0_Chr7g0177721 Rosa chinensis HOM05D002366 ORTHO05D002499 5.0e-46 188.3 181 56.9
FAN13G1140 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.1e-43 180.6 192 53.1
FvH4_5g17860 Fragaria vesca HOM05D002366 ORTHO05D002499 1.4e-43 180.3 187 54.5
FAN18G2907 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.4e-43 180.3 187 54.5
FAN18G0936 Fragaria x ananassa HOM05D002366 ORTHO05D002499 4.0e-43 178.7 192 53.1
FvH4_5g17870 Fragaria vesca HOM05D002366 ORTHO05D002499 2.0e-42 176.4 192 52.6
FAN13G0088 Fragaria x ananassa HOM05D002366 ORTHO05D002499 2.0e-42 176.4 182 54.9
FAN08G0111 Fragaria x ananassa HOM05D002366 ORTHO05D002499 1.3e-41 173.7 189 52.4
RcHm_v2.0_Chr7g0177731 Rosa chinensis HOM05D002366 ORTHO05D002499 1.0e-38 164.1 181 51.9
Actinidia28014 Actinidia chinensis HOM05D002366 ORTHO05D002499 6.0e-31 138.3 180 45.0
Cc04_g09120 Coffea canephora HOM05D002366 ORTHO05D002499 6.0e-31 138.3 179 43.0
Dinv15677 Davidia involucrata HOM05D002366 ORTHO05D002499 6.0e-31 138.3 182 46.2
Potri.012G040100 Populus trichocarpa HOM05D002366 ORTHO05D002499 2.3e-30 136.3 194 45.4
Atru.chr11.990 Acer truncatum HOM05D002366 ORTHO05D002499 6.6e-30 134.8 189 41.8
Oeu019149.1 Olea europaea HOM05D002366 ORTHO05D002499 8.6e-30 134.4 180 45.0
MBI13_g21678_MAGBIO Magnolia biondii HOM05D002366 ORTHO05D002499 2.5e-29 132.9 190 42.1
Atru.chr9.1589 Acer truncatum HOM05D002366 ORTHO05D002499 7.3e-29 131.3 175 44.6
TPR.G28607 Trifolium pratense HOM05D002366 ORTHO05D002499 7.3e-29 131.3 179 41.3
Thecc.03G067200 Theobroma cacao HOM05D002366 ORTHO05D002499 3.6e-28 129.0 185 42.2
Medtr6g073040 Medicago truncatula HOM05D002366 ORTHO05D002499 8.1e-28 127.9 179 42.5
Medtr6g073090 Medicago truncatula HOM05D002366 ORTHO05D002499 8.1e-28 127.9 179 42.5
PGR083G2740 Punica granatum HOM05D002366 ORTHO05D002499 1.8e-27 126.7 181 41.4
Lj2g0004495 Lotus japonicus HOM05D002366 ORTHO05D002499 2.4e-27 126.3 179 37.4
Peaxi162Scf00171g00733 Petunia axillaris HOM05D002366 ORTHO05D002499 8.9e-27 124.4 190 40.5
Duzib205G0226 Durio zibethinus HOM05D002366 ORTHO05D002499 2.6e-26 122.9 180 40.0
Migut.I00570 Erythranthe guttata HOM05D002366 ORTHO05D002499 4.4e-26 122.1 182 40.1
Oeu042016.1 Olea europaea HOM05D002366 ORTHO05D002499 4.4e-26 122.1 178 39.9
Solyc03g098090.2 Solanum lycopersicum HOM05D002366 ORTHO05D002499 5.8e-26 121.7 187 42.8
Nitab4.5_0004454g0030 Nicotiana tabacum HOM05D002366 ORTHO05D002499 7.6e-26 121.3 190 40.5
TWI74G0850 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 7.6e-26 121.3 194 37.1
Sopen03g028790 Solanum pennellii HOM05D002366 ORTHO05D002499 2.2e-25 119.8 186 41.4
Nitab4.5_0025009g0010 Nicotiana tabacum HOM05D002366 ORTHO05D002499 6.4e-25 118.2 190 39.5
CANSAT01G2159 Cannabis sativa HOM05D002366 ORTHO05D002499 3.2e-24 115.9 175 42.3
Cfa020652 Carpinus fangiana HOM05D002366 ORTHO05D002499 3.2e-24 115.9 182 44.0
Manes.14G174100 Manihot esculenta HOM05D002366 ORTHO05D002499 4.2e-24 115.5 197 38.1
Haze_18932 Corylus avellana HOM05D002366 ORTHO05D002499 5.4e-24 115.2 178 43.8
Glyma.07G107600 Glycine max HOM05D002366 ORTHO05D002499 7.1e-24 114.8 179 36.9
TWI81G0381 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 9.3e-24 114.4 183 37.2
Psat1g123560 Pisum sativum HOM05D002366 ORTHO05D002499 1.2e-23 114.0 179 38.5
TAR629G0597 Trochodendron aralioides HOM05D002366 ORTHO05D002499 1.2e-23 114.0 94 60.6
Glyma.09G170100 Glycine max HOM05D002366 ORTHO05D002499 1.3e-22 110.5 179 35.2
Thecc.09G204000 Theobroma cacao HOM05D002366 ORTHO05D002499 2.3e-22 109.8 182 40.1
PGSC0003DMG400037321 Solanum tuberosum HOM05D002366 ORTHO05D002499 3.9e-22 109.0 172 41.3
Ca_20288_v3 Cicer arietinum L. HOM05D000229 ORTHO05D000182 8.7e-22 107.8 94 57.4
Duzib084G1428 Durio zibethinus HOM05D002366 ORTHO05D002499 1.1e-21 107.5 175 37.1
Phvul.004G145800 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 3.3e-21 105.9 185 36.8
SalBow5G4446 Salvia bowleyana HOM05D002366 ORTHO05D002499 5.6e-21 105.1 171 38.0
TWI60G0723 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 9.6e-21 104.4 192 35.4
Lsat_1_v5_gn_7_29321 Lactuca sativa HOM05D002366 ORTHO05D002499 1.6e-20 103.6 177 36.2
COL.COLO4_32729 Corchorus olitorius HOM05D002366 ORTHO05D002499 2.1e-20 103.2 178 38.2
Glyma.16G219700 Glycine max HOM05D002366 ORTHO05D002499 8.1e-20 101.3 174 35.6
Peaxi162Scf00171g00734 Petunia axillaris HOM05D002366 ORTHO05D002499 8.1e-20 101.3 183 36.6
Peaxi162Scf00358g00614 Petunia axillaris HOM05D002366 ORTHO05D002499 3.1e-19 99.4 181 38.1
Haze_18955 Corylus avellana HOM05D002366 ORTHO05D002499 4.0e-19 99.0 182 40.7
Aqoxy3G04031 Aquilegia oxysepala HOM05D002366 ORTHO05D002499 5.3e-19 98.6 177 35.0
VMungo0464G1622 Vigna mungo HOM05D002366 ORTHO05D002499 4.5e-18 95.5 94 47.9
Phvul.004G145701 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 5.8e-18 95.1 177 33.9
Cfa020651 Carpinus fangiana HOM05D002366 ORTHO05D002499 7.6e-18 94.7 177 40.7
ECA232G1962 Erigeron canadensis HOM05D000340 ORTHO05D000821 7.6e-18 94.7 162 37.0
ATR0598G065 Amborella trichopoda HOM05D002366 ORTHO05D002499 9.9e-18 94.4 103 44.7
Nitab4.5_0000021g0380 Nicotiana tabacum HOM05D002366 ORTHO05D002499 1.3e-17 94.0 95 51.6
Haze_18933 Corylus avellana HOM05D002366 ORTHO05D002499 2.9e-17 92.8 184 38.6
PGSC0003DMG400027047 Solanum tuberosum HOM05D002366 ORTHO05D002499 2.9e-17 92.8 171 33.3
DCAR_010197 Daucus carota HOM05D002366 ORTHO05D002499 4.9e-17 92.0 178 32.6
Nitab4.5_0000033g0360 Nicotiana tabacum HOM05D002366 ORTHO05D002499 6.4e-17 91.7 180 34.4
Gorai.005G134800 Gossypium raimondii HOM05D002366 ORTHO05D002499 8.4e-17 91.3 187 34.2
Solyc03g112800.2 Solanum lycopersicum HOM05D002366 ORTHO05D002499 8.4e-17 91.3 97 51.5
Gohir.A03G090932 Gossypium hirsutum HOM05D002366 ORTHO05D002499 1.1e-16 90.9 187 33.7
VMungo0464G0502 Vigna mungo HOM05D002366 ORTHO05D002499 1.4e-16 90.5 172 33.7
Nitab4.5_0002771g0030 Nicotiana tabacum HOM05D002366 ORTHO05D002499 9.3e-16 87.8 180 33.3
VMungo0464G0902 Vigna mungo HOM05D002366 ORTHO05D002499 2.1e-15 86.7 170 32.4
Gohir.D02G119100 Gossypium hirsutum HOM05D002366 ORTHO05D002499 4.6e-15 85.5 188 34.0
DCAR_010198 Daucus carota HOM05D002366 ORTHO05D002499 1.3e-14 84.0 168 33.3
GSVIVG01016540001 Vitis vinifera HOM05D002366 ORTHO05D002499 1.3e-14 84.0 167 35.9
MELO3C001930.2 Cucumis melo HOM05D002366 ORTHO05D002499 6.7e-14 81.6 181 32.0
Solyc06g072350.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 1.1e-13 80.9 171 29.8
Sopen06g028720 Solanum pennellii HOM05D002366 ORTHO05D002499 2.5e-13 79.7 181 28.7
Nitab4.5_0001243g0010 Nicotiana tabacum HOM05D002366 ORTHO05D002499 3.3e-13 79.3 206 31.6
Sopen03g031880 Solanum pennellii HOM05D002366 ORTHO05D002499 3.3e-13 79.3 144 33.3
DCAR_010199 Daucus carota HOM05D002366 ORTHO05D002499 5.6e-13 78.6 178 29.2
ClCG04G012730 Citrullus lanatus HOM05D002366 ORTHO05D002499 7.4e-13 78.2 164 33.5
Solyc01g005040.3 Solanum lycopersicum HOM05D002366 ORTHO05D014666 1.3e-12 77.4 171 29.8
Sed0024270 Sechium edule HOM05D002366 ORTHO05D002499 4.8e-12 75.5 164 34.1
Sabra10G0158200 Salix brachista HOM05D002366 ORTHO05D002499 6.2e-12 75.1 172 32.6
CSS0010618 Camellia sinensis var. sinensis HOM05D002366 ORTHO05D002499 1.8e-11 73.6 180 31.7
Dinv20495 Davidia involucrata HOM05D002366 ORTHO05D002499 2.4e-11 73.2 186 30.1
TPR.G15520 Trifolium pratense HOM05D002366 ORTHO05D002499 4.0e-11 72.4 165 30.3
CsaV3_1G004870 Cucumis sativus L. HOM05D002366 ORTHO05D002499 5.3e-11 72.0 166 32.5
Dinv20547 Davidia involucrata HOM05D002366 ORTHO05D002499 5.3e-11 72.0 197 28.9
Medtr7g024750 Medicago truncatula HOM05D002366 ORTHO05D002499 6.9e-11 71.6 161 32.3
TPR.G15505 Trifolium pratense HOM05D002366 ORTHO05D002499 6.9e-11 71.6 141 31.9
Duzib114G1053 Durio zibethinus HOM05D002366 ORTHO05D002499 9.0e-11 71.2 174 32.8
TWI38G1308 Tripterygium wilfordii HOM05D002366 ORTHO05D002499 1.5e-10 70.5 130 30.8
SalBow3G2180 Salvia bowleyana HOM05D002366 ORTHO05D002499 2.6e-10 69.7 173 32.4
Lalb_Chr10g0091701 Lupinus albus HOM05D002366 ORTHO05D002499 4.5e-10 68.9 178 32.0
Sabra10G0158300 Salix brachista HOM05D002366 ORTHO05D002499 4.5e-10 68.9 162 32.1
CARHR134410 Cardamine hirsuta HOM05D002366 ORTHO05D002499 5.8e-10 68.6 164 31.1
CDE07G1817 Ceratophyllum demersum HOM05D002366 ORTHO05D002499 5.8e-10 68.6 172 32.0
ECA233G2103 Erigeron canadensis HOM05D002366 ORTHO05D002499 5.8e-10 68.6 167 31.1
Nitab4.5_0002905g0040 Nicotiana tabacum HOM05D002366 ORTHO05D014666 7.6e-10 68.2 111 34.2
Oeu048250.1 Olea europaea HOM05D002366 ORTHO05D002499 7.6e-10 68.2 174 31.0
MSTRG.8245 Avicennia marina HOM05D002366 ORTHO05D002499 9.9e-10 67.8 163 31.3
Glyma.18G289800 Glycine max HOM05D002366 ORTHO05D002499 9.9e-10 67.8 162 30.9
Gohir.A10G217500 Gossypium hirsutum HOM05D002366 ORTHO05D002499 9.9e-10 67.8 177 30.5
Dinv20493 Davidia involucrata HOM05D002366 ORTHO05D002499 1.3e-09 67.4 134 34.3
Dinv20549 Davidia involucrata HOM05D002366 ORTHO05D002499 1.3e-09 67.4 134 34.3
Manes.17G090200 Manihot esculenta HOM05D002366 ORTHO05D002499 1.3e-09 67.4 179 28.5
Ca_07285_v3 Cicer arietinum L. HOM05D002366 ORTHO05D002499 2.2e-09 66.6 164 31.1
Sopen01g001060 Solanum pennellii HOM05D000238 ORTHO05D001156 2.2e-09 66.6 158 28.5
CsaV3_5G026570 Cucumis sativus L. HOM05D002366 ORTHO05D002499 2.9e-09 66.2 159 28.9
Dinv26005 Davidia involucrata HOM05D002366 ORTHO05D002499 2.9e-09 66.2 173 31.8
Eucgr.G02924 Eucalyptus grandis HOM05D002366 ORTHO05D002499 2.9e-09 66.2 164 30.5
Gorai.011G257400 Gossypium raimondii HOM05D002366 ORTHO05D002499 3.8e-09 65.9 177 30.5
Nitab4.5_0001822g0030 Nicotiana tabacum HOM05D002366 ORTHO05D014666 3.8e-09 65.9 170 30.0
SalBow6G6566 Salvia bowleyana HOM05D002366 ORTHO05D002499 3.8e-09 65.9 174 31.6
Psat3g179160 Pisum sativum HOM05D002366 ORTHO05D002499 6.4e-09 65.1 141 30.5
arahy.Tifrunner.gnm1.ann1.VML05H Arachis hypogaea HOM05D002366 ORTHO05D002499 8.4e-09 64.7 175 29.1
Gohir.D10G226300 Gossypium hirsutum HOM05D002366 ORTHO05D002499 8.4e-09 64.7 177 29.9
Gohir.D10G226600 Gossypium hirsutum HOM05D002366 ORTHO05D002499 8.4e-09 64.7 177 29.9
Lsat_1_v5_gn_8_34180 Lactuca sativa HOM05D002366 ORTHO05D002499 8.4e-09 64.7 168 28.6
SalBow6G6394 Salvia bowleyana HOM05D002366 ORTHO05D002499 8.4e-09 64.7 174 31.6
BcaC02g07399 Brassica carinata HOM05D002366 ORTHO05D002499 1.1e-08 64.3 160 31.2
arahy.Tifrunner.gnm1.ann1.BG6DLE Arachis hypogaea HOM05D002366 ORTHO05D002499 1.4e-08 63.9 179 30.7
arahy.Tifrunner.gnm1.ann1.CW7JQJ Arachis hypogaea HOM05D002366 ORTHO05D002499 1.4e-08 63.9 179 30.7
MELO3C021643.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.4e-08 63.9 172 28.5
Medtr7g024730 Medicago truncatula HOM05D002366 ORTHO05D002499 1.9e-08 63.5 149 31.5
Cc02_g07930 Coffea canephora HOM05D002366 ORTHO05D002499 2.4e-08 63.2 175 28.6
Cc02_g07950 Coffea canephora HOM05D002366 ORTHO05D002499 3.2e-08 62.8 170 32.4
Lalb_Chr17g0336171 Lupinus albus HOM05D002366 ORTHO05D002499 3.2e-08 62.8 175 29.7
AT2G39518 Arabidopsis thaliana HOM05D002366 ORTHO05D002499 4.2e-08 62.4 163 30.7
arahy.Tifrunner.gnm1.ann1.1AG2TC Arachis hypogaea HOM05D002366 ORTHO05D002499 4.2e-08 62.4 175 28.6
Carub.0004s2160 Capsella rubella HOM05D002366 ORTHO05D002499 4.2e-08 62.4 160 30.6
Phvul.008G012300 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 4.2e-08 62.4 172 27.9
Dinv31454 Davidia involucrata HOM05D002366 ORTHO05D002499 5.5e-08 62.0 133 33.8
THA.LOC104810173 Tarenaya hassleriana HOM05D002366 ORTHO05D002499 9.3e-08 61.2 172 33.1
Peaxi162Scf00025g00019 Petunia axillaris HOM05D019649 ORTHO05D014666 1.2e-07 60.8 94 34.0
AL4G36940 Arabidopsis lyrata HOM05D002366 ORTHO05D002499 2.1e-07 60.1 166 30.7
BcaB06g29095 Brassica carinata HOM05D002366 ORTHO05D002499 2.1e-07 60.1 160 30.6
CANSAT56G2475 Cannabis sativa HOM05D002366 ORTHO05D002499 2.1e-07 60.1 175 30.3
Sopen04g005660 Solanum pennellii HOM05D002366 ORTHO05D002499 2.1e-07 60.1 174 32.2
CANSAT56G4267 Cannabis sativa HOM05D002366 ORTHO05D002499 2.7e-07 59.7 175 29.7
Glyma.02G092500 Glycine max HOM05D002366 ORTHO05D002499 2.7e-07 59.7 170 29.4
Glyma.18G289900 Glycine max HOM05D002366 ORTHO05D002499 2.7e-07 59.7 172 27.9
Glyma.18G290100 Glycine max HOM05D002366 ORTHO05D002499 2.7e-07 59.7 172 27.9
Phvul.008G012200 Phaseolus vulgaris HOM05D002366 ORTHO05D002499 2.7e-07 59.7 162 29.0
Prupe.2G233900 Prunus persica HOM05D002366 ORTHO05D002499 2.7e-07 59.7 171 31.0
MELO3C033579.2 Cucumis melo HOM05D002366 ORTHO05D002499 4.6e-07 58.9 173 28.9
CsaV3_5G026560 Cucumis sativus L. HOM05D002366 ORTHO05D002499 4.6e-07 58.9 174 30.5
Glyma.02G092600 Glycine max HOM05D002366 ORTHO05D002499 7.9e-07 58.2 166 26.5
Solyc04g011480.3 Solanum lycopersicum HOM05D002366 ORTHO05D002499 1.0e-06 57.8 175 31.4
MELO3C021645.2 Cucumis melo HOM05D002366 ORTHO05D002499 1.3e-06 57.4 172 29.7
Peaxi162Scf00033g02314 Petunia axillaris HOM05D002366 ORTHO05D014666 1.3e-06 57.4 172 26.2
Prupe.2G233700 Prunus persica HOM05D002366 ORTHO05D002499 1.3e-06 57.4 164 31.1
Sed0022735 Sechium edule HOM05D002366 ORTHO05D002499 1.3e-06 57.4 165 27.9
CsaV3_5G026540 Cucumis sativus L. HOM05D002366 ORTHO05D002499 1.8e-06 57.0 172 30.2
Peaxi162Scf00025g00018 Petunia axillaris HOM05D019649 ORTHO05D014666 2.3e-06 56.6 94 34.0
CAN.G786.13 Capsicum annuum HOM05D002366 ORTHO05D002499 3.0e-06 56.2 98 35.7
VMungo1383G2089 Vigna mungo HOM05D002366 ORTHO05D002499 3.0e-06 56.2 171 25.7
TPR.G18306 Trifolium pratense HOM05D002366 ORTHO05D002499 3.9e-06 55.8 124 33.1
SalBow3G4426 Salvia bowleyana HOM05D002366 ORTHO05D002499 5.1e-06 55.5 76 36.8
PGSC0003DMG400027749 Solanum tuberosum HOM05D002366 ORTHO05D002499 5.1e-06 55.5 175 28.6
Sed0005662 Sechium edule HOM05D002366 ORTHO05D002499 6.7e-06 55.1 176 26.7
Sopen04g005670 Solanum pennellii HOM05D002366 ORTHO05D002499 6.7e-06 55.1 174 27.6
Sed0019419 Sechium edule HOM05D002366 ORTHO05D002499 8.7e-06 54.7 179 29.1


User provided reference genes

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