Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1237600 Malus domestica HOM05D005585 ORTHO05D006905 3.0e-188 661.8 349 100.0
MD06G1228400 Malus domestica HOM05D005585 ORTHO05D006905 1.0e-156 557.0 352 82.7
Prupe.5G234900 Prunus persica HOM05D005585 ORTHO05D006905 8.5e-143 510.8 354 72.9
RcHm_v2.0_Chr7g0178161 Rosa chinensis HOM05D005585 ORTHO05D006905 3.7e-138 495.4 349 73.1
FvH4_5g17500 Fragaria vesca HOM05D005585 ORTHO05D006905 3.0e-132 475.7 346 69.7
FAN08G0665 Fragaria x ananassa HOM05D005585 ORTHO05D006905 4.4e-131 471.9 347 70.6
Manes.06G004600 Manihot esculenta HOM05D005585 ORTHO05D006905 4.0e-124 448.7 358 64.8
FAN04G2668 Fragaria x ananassa HOM05D005585 ORTHO05D006905 8.8e-124 447.6 340 67.9
FAN18G2151 Fragaria x ananassa HOM05D005585 ORTHO05D006905 3.4e-123 445.7 323 71.8
Dinv20235 Davidia involucrata HOM05D005585 ORTHO05D006905 1.3e-122 443.7 350 63.4
Potri.012G045200 Populus trichocarpa HOM05D005585 ORTHO05D006905 1.7e-119 433.3 298 69.8
Thecc.03G059000 Theobroma cacao HOM05D005585 ORTHO05D006905 1.5e-118 430.3 295 70.2
CiPaw.15G144600 Carya illinoinensis HOM05D005585 ORTHO05D006905 1.2e-117 427.2 295 71.9
QL10p030702 Quercus lobata HOM05D005585 ORTHO05D006905 1.2e-117 427.2 294 70.1
CSS0043300 Camellia sinensis var. sinensis HOM05D005585 ORTHO05D006905 2.8e-117 426.0 285 70.9
Duzib068G1453 Durio zibethinus HOM05D005585 ORTHO05D006905 2.8e-117 426.0 352 62.5
CsaV3_1G007220 Cucumis sativus L. HOM05D005585 ORTHO05D006905 6.1e-117 424.9 350 64.6
Gohir.A09G175000 Gossypium hirsutum HOM05D005585 ORTHO05D006905 1.0e-116 424.1 285 71.2
CANSAT80G2587 Cannabis sativa HOM05D005585 ORTHO05D006905 3.0e-116 422.5 348 62.4
Gorai.006G191400 Gossypium raimondii HOM05D005585 ORTHO05D006905 1.2e-115 420.6 287 70.0
TAR628G0421 Trochodendron aralioides HOM05D005585 ORTHO05D006905 1.2e-115 420.6 297 68.4
CANSAT80G1087 Cannabis sativa HOM05D005585 ORTHO05D006905 1.5e-115 420.2 348 62.4
Hma1.2p1_0163F.1_g072970 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.5e-115 420.2 360 60.6
Nn5g30598 Nelumbo nucifera HOM05D005585 ORTHO05D006905 2.6e-115 419.5 299 68.6
MELO3C002139.2 Cucumis melo HOM05D005585 ORTHO05D006905 5.7e-115 418.3 350 63.4
GSVIVG01008457001 Vitis vinifera HOM05D005585 ORTHO05D006905 7.5e-115 417.9 289 68.9
COL.COLO4_28892 Corchorus olitorius HOM05D005585 ORTHO05D006905 2.4e-113 412.9 291 69.1
PGR044G1909 Punica granatum HOM05D005585 ORTHO05D006905 7.0e-113 411.4 295 66.1
Ciclev10015784m.g Citrus clementina HOM05D005585 ORTHO05D006905 9.2e-113 411.0 285 69.1
Lalb_Chr14g0370621 Lupinus albus HOM05D005585 ORTHO05D006905 1.2e-112 410.6 294 67.7
Phvul.004G149700 Phaseolus vulgaris HOM05D005585 ORTHO05D006905 4.6e-112 408.7 283 71.0
Glyma.07G103200 Glycine max HOM05D005585 ORTHO05D006905 3.9e-111 405.6 295 67.8
Haze_18886 Corylus avellana HOM05D005585 ORTHO05D006905 1.9e-110 403.3 280 68.6
ClCG04G010560 Citrullus lanatus HOM05D005585 ORTHO05D006905 5.6e-110 401.7 350 58.9
TWI60G0738 Tripterygium wilfordii HOM05D005585 ORTHO05D006905 7.3e-110 401.4 298 65.8
Eucgr.B00886 Eucalyptus grandis HOM05D005585 ORTHO05D006905 9.5e-110 401.0 295 66.1
Lj2g0015776 Lotus japonicus HOM05D005585 ORTHO05D006905 9.5e-110 401.0 286 67.8
Cc04_g06090 Coffea canephora HOM05D005585 ORTHO05D006905 1.2e-109 400.6 298 64.8
Oeu026263.1 Olea europaea HOM05D005585 ORTHO05D006905 2.1e-109 399.8 270 69.6
Lalb_Chr22g0353511 Lupinus albus HOM05D005585 ORTHO05D006905 3.6e-109 399.1 296 66.2
Sed0009200 Sechium edule HOM05D005585 ORTHO05D006905 8.0e-109 397.9 285 66.7
Psat1g030240 Pisum sativum HOM05D005585 ORTHO05D006905 1.0e-108 397.5 285 68.1
MSTRG.6190 Avicennia marina HOM05D005585 ORTHO05D006905 1.4e-108 397.1 286 68.2
PGSC0003DMG400005757 Solanum tuberosum HOM05D005585 ORTHO05D006905 1.4e-108 397.1 298 64.1
Rhsim08G0150200 Rhododendron simsii HOM05D005585 ORTHO05D006905 1.8e-108 396.7 274 69.3
Medtr6g069850 Medicago truncatula HOM05D005585 ORTHO05D006905 6.8e-108 394.8 296 64.9
arahy.Tifrunner.gnm1.ann1.8TLB5V Arachis hypogaea HOM05D005585 ORTHO05D006905 2.6e-107 392.9 282 69.1
Thhalv10021015m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 3.4e-107 392.5 302 60.9
TPR.G8624 Trifolium pratense HOM05D005585 ORTHO05D006905 5.8e-107 391.7 297 65.7
Lsat_1_v5_gn_8_83620 Lactuca sativa HOM05D005585 ORTHO05D006905 1.7e-106 390.2 286 65.4
ECA236G2254 Erigeron canadensis HOM05D005585 ORTHO05D006905 2.9e-106 389.4 290 65.9
Hund22311 Selenicereus undatus HOM05D005585 ORTHO05D006905 3.7e-106 389.0 297 65.3
Nitab4.5_0001264g0050 Nicotiana tabacum HOM05D005585 ORTHO05D006905 1.1e-105 387.5 285 66.7
ATR1153G069 Amborella trichopoda HOM05D005585 ORTHO05D006905 1.9e-105 386.7 293 63.5
BcaC05g28739 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-105 386.7 299 60.9
BolC5t33576H Brassica oleracea HOM05D005585 ORTHO05D006905 1.9e-105 386.7 299 60.9
Migut.I00267 Erythranthe guttata HOM05D005585 ORTHO05D006905 4.1e-105 385.6 291 64.9
HanXRQChr06g0178071 Helianthus annuus HOM05D005585 ORTHO05D006905 5.4e-105 385.2 290 65.2
DCAR_003540 Daucus carota HOM05D005585 ORTHO05D006905 1.6e-104 383.6 295 64.4
C05p48400 Brassica napus HOM05D005585 ORTHO05D006905 2.0e-104 383.3 285 62.5
Ca_25346_v3 Cicer arietinum L. HOM05D005585 ORTHO05D006905 2.0e-104 383.3 302 63.6
A05p31890 Brassica napus HOM05D005585 ORTHO05D006905 2.7e-104 382.9 285 62.5
BraA05t22021Z Brassica rapa HOM05D005585 ORTHO05D006905 2.7e-104 382.9 285 62.5
BcaB06g25853 Brassica carinata HOM05D005585 ORTHO05D006905 3.5e-104 382.5 288 62.5
PSO017G0826 Papaver somniferum HOM05D005585 ORTHO05D006905 4.6e-104 382.1 351 59.3
PSO170G1171 Papaver somniferum HOM05D005585 ORTHO05D006905 4.6e-104 382.1 302 63.9
THA.LOC104821828 Tarenaya hassleriana HOM05D005585 ORTHO05D006905 1.0e-103 380.9 297 62.3
AUR62001019 Chenopodium quinoa HOM05D005585 ORTHO05D006905 1.3e-103 380.6 278 66.2
Sp3g16030 Schrenkiella parvula HOM05D005585 ORTHO05D006905 1.7e-103 380.2 297 60.6
Aa31LG8G4780 Aethionema arabicum HOM05D005585 ORTHO05D006905 2.3e-103 379.8 301 60.5
arahy.Tifrunner.gnm1.ann1.E1YKD2 Arachis hypogaea HOM05D005585 ORTHO05D006905 3.0e-103 379.4 263 70.0
Sabra12G0031400 Salix brachista HOM05D005585 ORTHO05D006905 3.0e-103 379.4 300 62.7
SalBow7G1179 Salvia bowleyana HOM05D005585 ORTHO05D006905 3.0e-103 379.4 287 64.8
Aqoxy5G00867 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 3.9e-103 379.0 297 61.3
AL3G31080 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 6.6e-103 378.3 285 62.5
A01p36480 Brassica napus HOM05D005585 ORTHO05D006905 1.9e-102 376.7 285 61.4
BraA01t03712Z Brassica rapa HOM05D005585 ORTHO05D006905 1.9e-102 376.7 285 61.4
Carub.0003s1764 Capsella rubella HOM05D005585 ORTHO05D006905 1.6e-101 373.6 285 61.4
BcaC09g48755 Brassica carinata HOM05D005585 ORTHO05D006905 2.8e-101 372.9 300 59.7
vmacro08951 Vaccinium macrocarpon HOM05D005585 ORTHO05D006905 8.1e-101 371.3 310 59.4
C01p46240 Brassica napus HOM05D005585 ORTHO05D006905 2.3e-100 369.8 302 59.3
BolC1t04585H Brassica oleracea HOM05D005585 ORTHO05D006905 2.3e-100 369.8 302 59.3
AT3G17910 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 3.1e-100 369.4 285 60.7
Solyc03g118610.4 Solanum lycopersicum HOM05D005585 ORTHO05D006905 1.5e-99 367.1 285 62.1
EL10Ac4g09125 Beta vulgaris HOM05D005585 ORTHO05D006905 3.7e-98 362.5 270 63.3
CARHR093240 Cardamine hirsuta HOM05D005585 ORTHO05D006905 3.7e-98 362.5 301 59.8
Lj5C159G17 Lonicera japonica HOM05D005585 ORTHO05D006905 4.9e-98 362.1 244 71.3
BcaB04g20808 Brassica carinata HOM05D005585 ORTHO05D006905 8.3e-98 361.3 285 60.7
Sopen03g037560 Solanum pennellii HOM05D005585 ORTHO05D006905 1.9e-97 360.1 285 61.4
Nitab4.5_0010397g0010 Nicotiana tabacum HOM05D005585 ORTHO05D006905 3.5e-96 355.9 265 64.9
Sc12g0007980 Simmondsia chinensis HOM05D005585 ORTHO05D006905 3.5e-96 355.9 272 64.0
CDE04G0750 Ceratophyllum demersum HOM05D001130 ORTHO05D006905 5.1e-95 352.1 300 60.0
Os03g0200700 Oryza sativa ssp. japonica HOM05D005585 ORTHO05D006905 6.2e-93 345.1 292 58.6
Peaxi162Scf00314g00335 Petunia axillaris HOM05D005585 ORTHO05D006905 1.1e-92 344.4 256 65.6
Glyma.09G174400 Glycine max HOM05D005585 ORTHO05D006905 1.4e-92 344.0 254 66.5
VMungo0464G1491 Vigna mungo HOM05D005585 ORTHO05D006905 2.3e-92 343.2 245 69.8
HPP92_019169 Vanilla planifolia HOM05D005585 ORTHO05D006905 2.9e-90 336.3 294 57.1
Aqoxy5G00865 Aquilegia oxysepala HOM05D005585 ORTHO05D006905 5.4e-89 332.0 258 62.8
Hma1.2p1_0163F.1_g072980 Hydrangea macrophylla HOM05D005585 ORTHO05D006905 1.2e-88 330.9 225 68.9
TAR628G1367 Trochodendron aralioides HOM05D005585 ORTHO05D006905 6.0e-88 328.6 230 68.7
unitig_27.g25108 Utricularia gibba HOM05D005585 ORTHO05D006905 1.1e-86 324.3 299 55.9
Cpa.g.c34889 Carica papaya HOM05D005585 ORTHO05D006905 6.2e-85 318.5 220 69.1
CAN.G843.48 Capsicum annuum HOM05D005585 ORTHO05D006905 4.9e-82 308.9 294 53.7
Ah.06g192310 Amaranthus hybridus HOM05D005585 ORTHO05D008527 3.2e-81 306.2 256 57.4
AUR62004935 Chenopodium quinoa HOM05D005585 ORTHO05D006905 6.6e-79 298.5 222 64.4
Zm00001eb007820 Zea mays HOM05D005585 ORTHO05D006905 8.7e-79 298.1 255 58.8
QL12p007232 Quercus lobata HOM05D005585 ORTHO05D006905 1.1e-78 297.7 400 44.0
Eucgr.B00986 Eucalyptus grandis HOM05D005585 ORTHO05D006905 1.1e-68 264.6 198 64.1
Mapoly0094s0071 Marchantia polymorpha HOM05D005585 ORTHO05D006905 1.5e-67 260.8 296 47.3
Gohir.D09G170128 Gossypium hirsutum HOM05D005585 ORTHO05D006905 6.4e-66 255.4 177 69.5
Cpa.g.sc3.377 Carica papaya HOM05D005585 ORTHO05D006905 3.9e-63 246.1 301 48.2
CARHR038140 Cardamine hirsuta HOM05D005585 ORTHO05D006905 8.2e-61 238.4 289 46.7
Pp3c5_4480 Physcomitrium patens HOM05D005585 ORTHO05D006905 2.0e-59 233.8 311 43.1
SMO147G0391 Selaginella moellendorffii HOM05D005585 ORTHO05D006905 1.1e-57 228.0 284 43.0
AL1G55160 Arabidopsis lyrata HOM05D005585 ORTHO05D006905 4.3e-54 216.1 281 41.6
SGA_v2.0_scaffold58G20371 Striga asiatica HOM05D005585 ORTHO05D006905 1.5e-51 207.6 165 61.2
Thhalv10011732m.g Eutrema salsugineum HOM05D005585 ORTHO05D006905 5.0e-50 202.6 244 43.4
AT1G48510 Arabidopsis thaliana HOM05D005585 ORTHO05D006905 1.4e-49 201.1 268 42.2
SEGI_34948 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 7.9e-48 195.3 153 58.2
FAN13G1174 Fragaria x ananassa HOM05D005585 ORTHO05D006905 1.8e-47 194.1 161 63.4
Carub.0001s3764 Capsella rubella HOM05D005585 ORTHO05D006905 2.3e-47 193.7 259 41.3
Carub.0001s3763 Capsella rubella HOM05D005585 ORTHO05D006905 9.1e-44 181.8 270 38.9
AagrBONN_evm.TU.Sc2ySwM_340.176 Anthoceros agrestis HOM05D005585 ORTHO05D006905 3.4e-43 179.9 258 39.9
TAR628G1286 Trochodendron aralioides HOM05D005585 ORTHO05D006905 3.8e-42 176.4 141 59.6
BcaB04g20806 Brassica carinata HOM05D005585 ORTHO05D006905 1.9e-41 174.1 177 50.3
CBR_g50834 Chara braunii HOM05D002601 ORTHO05D002884 1.8e-39 167.5 384 31.0
Zm00001eb338430 Zea mays HOM05D005585 ORTHO05D006905 1.7e-37 161.0 89 79.8
Gohir.D09G170071 Gossypium hirsutum HOM05D005585 ORTHO05D006905 9.1e-36 155.2 94 76.6
PRCOL_00002102 Prasinoderma coloniale HOM05D005585 ORTHO05D006905 1.5e-35 154.5 309 31.4
BcaB08g34867 Brassica carinata HOM05D005585 ORTHO05D006905 2.0e-35 154.1 229 37.1
SEGI_19570 Sequoiadendron giganteum HOM05D005585 ORTHO05D006905 9.7e-30 135.2 119 52.9
Zm00001eb099110 Zea mays HOM05D005585 ORTHO05D006905 2.2e-29 134.0 117 56.4
Cre16.g664700 Chlamydomonas reinhardtii HOM05D005585 ORTHO05D006905 2.6e-22 110.5 322 27.6
CBR_g629 Chara braunii HOM05D005585 ORTHO05D006905 1.0e-15 88.6 203 29.6
CDE07G0810 Ceratophyllum demersum HOM05D005585 ORTHO05D006905 7.7e-11 72.4 84 48.8
Cfa024306 Carpinus fangiana HOM05D005585 ORTHO05D006905 6.1e-08 62.8 259 25.1


User provided reference genes

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