Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 3.3e-63 245.0 133 100.0
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 2.2e-27 125.9 177 46.3
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 7.2e-26 120.9 184 42.9
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 7.2e-26 120.9 184 42.9
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 7.2e-26 120.9 184 42.9
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 1.4e-24 116.7 184 41.8
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.0e-24 115.5 184 41.8
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 7.5e-23 110.9 179 41.3
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 4.8e-22 108.2 180 40.0
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 6.3e-22 107.8 60 88.3
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 1.4e-21 106.7 80 75.0
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 1.8e-21 106.3 143 47.6
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 2.4e-21 105.9 100 64.0
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 2.4e-21 105.9 90 66.7
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 2.4e-21 105.9 90 66.7
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 4.1e-21 105.1 80 73.8
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 5.4e-21 104.8 80 73.8
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 5.4e-21 104.8 80 73.8
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 7.0e-21 104.4 53 94.3
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 7.0e-21 104.4 53 94.3
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 7.0e-21 104.4 80 73.8
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 9.1e-21 104.0 53 94.3
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 1.2e-20 103.6 53 94.3
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 1.2e-20 103.6 53 94.3
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 1.2e-20 103.6 53 94.3
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 1.2e-20 103.6 53 92.5
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.2e-20 103.6 53 92.5
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 1.6e-20 103.2 54 92.6
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 1.6e-20 103.2 78 66.7
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 1.6e-20 103.2 53 92.5
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.6e-20 103.2 80 72.5
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 1.6e-20 103.2 53 92.5
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 2.7e-20 102.4 88 65.9
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 2.7e-20 102.4 67 76.1
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 2.7e-20 102.4 94 63.8
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 3.5e-20 102.1 53 92.5
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 3.5e-20 102.1 53 92.5
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 3.5e-20 102.1 94 62.8
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 4.5e-20 101.7 90 64.4
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 4.5e-20 101.7 53 90.6
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 4.5e-20 101.7 53 92.5
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 4.5e-20 101.7 80 71.2
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 4.5e-20 101.7 80 71.2
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 4.5e-20 101.7 53 88.7
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 5.9e-20 101.3 53 92.5
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 5.9e-20 101.3 53 90.6
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 5.9e-20 101.3 53 90.6
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 5.9e-20 101.3 53 90.6
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 5.9e-20 101.3 90 63.3
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 7.7e-20 100.9 67 73.1
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 7.7e-20 100.9 94 61.7
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 1.0e-19 100.5 85 68.2
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 1.0e-19 100.5 80 71.2
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 1.0e-19 100.5 80 71.2
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 1.0e-19 100.5 54 88.9
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 1.0e-19 100.5 100 61.0
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 1.0e-19 100.5 80 70.0
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.3e-19 100.1 53 88.7
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 1.7e-19 99.8 53 88.7
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 1.7e-19 99.8 53 88.7
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 1.7e-19 99.8 94 60.6
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 2.3e-19 99.4 53 86.8
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 2.3e-19 99.4 80 70.0
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 2.9e-19 99.0 79 65.8
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 2.9e-19 99.0 118 55.1
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 2.9e-19 99.0 115 55.7
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 3.8e-19 98.6 94 59.6
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 5.0e-19 98.2 53 86.8
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 6.6e-19 97.8 53 84.9
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 6.6e-19 97.8 53 86.8
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 1.1e-18 97.1 67 70.1
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.1e-18 97.1 53 86.8
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.1e-18 97.1 53 84.9
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 86.8
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 1.5e-18 96.7 53 83.0
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.9e-18 96.3 53 84.9
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.9e-18 96.3 53 84.9
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 3.3e-18 95.5 53 81.1
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 3.3e-18 95.5 53 81.1
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 3.3e-18 95.5 107 51.4
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 4.2e-18 95.1 53 79.2
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 4.2e-18 95.1 94 56.4
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 5.5e-18 94.7 51 82.4
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 5.5e-18 94.7 53 84.9
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 7.2e-18 94.4 55 80.0
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 1.2e-17 93.6 78 61.5
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 1.2e-17 93.6 94 55.3
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 1.2e-17 93.6 94 55.3
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 1.6e-17 93.2 88 56.8
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 2.1e-17 92.8 53 77.4
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 3.6e-17 92.0 107 49.5
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 3.6e-17 92.0 79 58.2
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 4.7e-17 91.7 80 60.0
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 6.1e-17 91.3 80 63.8
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.0e-16 90.5 92 55.4
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.0e-16 90.5 51 78.4
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 8.9e-16 87.4 79 57.0
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 8.9e-16 87.4 79 57.0
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 3.4e-15 85.5 79 54.4
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 2.2e-14 82.8 51 72.5
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 1.2e-12 77.0 90 45.6
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 7.8e-12 74.3 57 57.9
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 6.6e-11 71.2 78 44.9
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.5e-10 70.1 35 91.4


User provided reference genes

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