Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 2.9e-202 708.4 369 100.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 7.8e-187 657.1 369 91.6
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 3.2e-164 582.0 369 82.1
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.8e-155 550.8 369 76.7
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.4e-151 540.0 369 75.6
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 6.9e-151 537.7 369 75.6
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 7.1e-148 527.7 366 74.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.9e-142 507.3 366 71.6
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.7e-131 472.6 364 67.6
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 2.5e-129 466.1 374 65.0
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.3e-128 463.8 364 65.9
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.1e-127 460.7 374 65.2
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.8e-127 459.9 374 64.7
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 5.3e-127 458.4 371 66.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.2e-126 457.2 374 64.7
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.9e-126 454.9 374 64.2
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.0e-125 454.1 374 64.2
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.7e-125 453.4 371 65.0
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.2e-125 453.0 371 64.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.5e-124 449.5 364 65.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.5e-124 449.5 367 63.8
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 7.2e-124 448.0 371 63.3
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 1.2e-123 447.2 376 63.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.7e-123 446.0 363 64.2
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.6e-123 445.3 363 63.9
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 6.1e-123 444.9 374 63.4
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 1.1e-121 440.7 370 65.4
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.1e-121 440.7 380 61.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 1.5e-121 440.3 370 62.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 1.5e-121 440.3 370 62.2
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 3.3e-121 439.1 374 63.1
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.3e-120 437.2 369 61.5
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-119 434.1 374 61.5
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 1.2e-118 430.6 374 61.2
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 6.1e-115 418.3 372 61.3
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 3.9e-114 415.6 376 60.1
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 8.8e-114 414.5 366 59.0
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.1e-113 414.1 373 61.1
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.0e-113 413.3 371 59.3
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.3e-113 412.5 370 58.9
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 4.4e-113 412.1 368 58.4
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 4.4e-113 412.1 373 56.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.8e-112 409.5 363 58.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 3.1e-111 406.0 367 58.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.1e-111 405.6 374 58.8
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.1e-111 405.6 373 59.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 5.3e-111 405.2 370 59.7
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.7e-110 401.4 371 57.7
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.3e-109 400.6 369 58.8
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 2.2e-109 399.8 370 58.1
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.9e-109 399.4 367 56.7
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.9e-109 399.4 368 56.2
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.8e-109 399.1 371 58.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 6.5e-109 398.3 364 56.0
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.1e-108 397.5 365 57.8
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-108 397.5 368 55.7
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 1.4e-108 397.1 363 57.9
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 3.2e-108 396.0 331 61.6
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.5e-108 395.2 368 55.7
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 9.4e-108 394.4 323 64.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 1.2e-107 394.0 367 58.6
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 1.2e-107 394.0 370 57.0
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.6e-107 393.7 370 57.8
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.6e-107 393.7 383 54.8
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 1.6e-107 393.7 371 58.5
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 2.7e-107 392.9 371 57.4
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 3.6e-107 392.5 364 55.5
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 6.1e-107 391.7 365 56.7
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-106 390.6 313 66.1
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 8.8e-106 387.9 365 56.4
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 8.8e-106 387.9 373 57.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.1e-105 387.5 487 47.8
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 4.4e-105 385.6 364 56.9
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 5.7e-105 385.2 364 55.5
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.7e-105 385.2 369 55.6
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 7.4e-105 384.8 366 55.5
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 9.7e-105 384.4 378 54.2
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 1.7e-104 383.6 368 56.8
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 2.2e-104 383.3 365 56.2
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 3.7e-104 382.5 365 53.7
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.4e-103 380.6 362 53.6
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 9.1e-103 377.9 370 54.3
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.0e-102 376.7 371 55.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 2.6e-102 376.3 367 55.6
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-102 375.6 509 45.4
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 5.9e-102 375.2 365 54.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-102 374.8 365 53.4
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.7e-101 373.6 368 54.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.7e-101 373.6 404 51.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.7e-101 373.6 369 54.5
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-101 373.2 367 52.9
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 8.5e-101 371.3 361 55.1
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.5e-100 370.5 384 52.6
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 2.5e-100 369.8 379 53.0
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.2e-100 369.0 408 51.7
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 5.5e-100 368.6 364 52.7
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 7.2e-100 368.2 317 65.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.4e-100 367.9 371 53.6
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.6e-99 367.1 310 62.3
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.6e-99 367.1 378 53.7
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 2.7e-99 366.3 366 52.7
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 4.7e-99 365.5 366 52.7
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 4.7e-99 365.5 369 53.7
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.0e-98 364.4 390 51.3
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 4.0e-98 362.5 353 54.7
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.5e-97 360.5 355 54.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.0e-97 360.1 366 52.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 5.7e-97 358.6 351 54.7
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 5.7e-97 358.6 369 53.1
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.3e-96 357.5 352 54.5
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.2e-96 356.7 379 52.2
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 3.7e-96 355.9 403 48.1
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 1.1e-95 354.4 399 48.6
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.3e-95 352.1 357 54.3
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 9.1e-95 351.3 295 62.7
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.0e-94 350.1 375 50.4
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 7.7e-94 348.2 374 54.0
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.2e-93 346.7 287 61.7
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 7.2e-92 341.7 374 51.9
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 6.1e-91 338.6 366 50.3
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 8.0e-91 338.2 370 51.1
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 1.8e-90 337.0 569 41.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.4e-89 332.8 373 49.3
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.3e-88 330.9 351 51.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.8e-88 328.9 310 56.8
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.5e-84 317.4 370 48.4
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 4.2e-84 315.8 307 55.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.3e-82 310.1 207 75.4
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 5.2e-82 308.9 311 55.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.0e-77 292.4 297 52.5
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 9.8e-73 278.1 478 37.9
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.4e-71 273.5 209 69.4
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 6.0e-70 268.9 209 66.5
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.8e-67 260.0 210 64.8
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 2.8e-67 260.0 207 65.7
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.2e-64 250.4 312 48.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 5.4e-63 245.7 318 43.4
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-60 237.7 160 76.9
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 2.5e-60 236.9 307 44.6
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 1.6e-59 234.2 380 37.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.7e-59 232.6 173 72.3
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 6.2e-59 232.3 170 72.4
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-58 230.3 163 74.2
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-58 230.3 218 55.0
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.1e-58 229.9 170 71.8
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.8e-58 228.8 170 71.2
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.2e-57 228.0 218 54.6
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.5e-57 227.6 200 58.5
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.1e-55 221.5 166 69.9
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.1e-55 219.5 338 39.9
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.3e-52 209.9 303 44.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.6e-51 207.6 170 67.1
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.4e-50 203.8 377 35.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.6e-49 200.3 379 37.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 2.6e-49 200.3 377 37.9
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.3e-48 198.0 154 66.9
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 5.4e-47 192.6 189 57.1
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.1e-46 190.7 368 34.8
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.9e-44 184.1 381 33.6
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 2.0e-41 174.1 369 33.1
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 7.6e-41 172.2 255 41.2
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.4e-40 169.1 204 44.1
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.1e-39 165.6 106 81.1
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.1e-38 164.1 162 54.9
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.1e-37 159.5 131 64.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-36 157.5 151 59.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 5.3e-34 149.4 124 62.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 5.8e-33 146.0 160 45.0
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 7.6e-33 145.6 160 45.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 4.6e-30 136.3 135 51.9
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 1.8e-26 124.4 139 48.2
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.8e-26 124.4 138 43.5
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 9.0e-26 122.1 174 44.3
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.9e-24 116.3 134 44.8
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 5.7e-20 102.8 250 28.0
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.9e-16 90.5 307 26.4
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 3.2e-07 60.5 379 24.5


User provided reference genes

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