Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 4.6e-86 321.2 169 100.0
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 2.3e-53 212.6 151 76.8
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 3.6e-46 188.7 146 68.5
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 4.7e-46 188.3 146 69.9
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 4.7e-46 188.3 146 69.9
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 5.2e-45 184.9 146 68.5
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 8.8e-45 184.1 146 68.5
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.2e-44 183.7 146 67.8
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 3.8e-40 168.7 151 63.6
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 9.5e-39 164.1 165 60.6
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.1e-38 162.9 156 57.7
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 2.8e-38 162.5 173 54.9
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 1.0e-37 160.6 158 60.1
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 1.0e-37 160.6 147 62.6
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 2.3e-37 159.5 125 66.4
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 3.0e-37 159.1 110 73.6
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 4.0e-37 158.7 179 57.5
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 5.2e-37 158.3 169 58.0
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.2e-36 157.1 154 59.7
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 5.7e-36 154.8 166 57.2
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 5.7e-36 154.8 160 56.9
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 2.2e-35 152.9 165 58.2
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 3.7e-35 152.1 170 53.5
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 6.3e-35 151.4 169 54.4
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.1e-34 150.6 109 72.5
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 2.4e-34 149.4 129 64.3
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 2.4e-34 149.4 164 57.9
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 4.1e-34 148.7 165 56.4
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 5.4e-34 148.3 164 56.1
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 5.4e-34 148.3 183 55.2
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 9.2e-34 147.5 167 56.9
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 9.2e-34 147.5 164 57.3
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 1.2e-33 147.1 138 59.4
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.6e-33 146.7 166 56.6
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.6e-33 146.7 175 54.3
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 1.6e-33 146.7 132 62.1
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 2.0e-33 146.4 168 56.5
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 2.0e-33 146.4 167 55.7
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 3.5e-33 145.6 111 67.6
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 4.5e-33 145.2 117 65.0
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 5.9e-33 144.8 144 60.4
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.0e-32 144.1 148 60.8
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 1.0e-32 144.1 149 56.4
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 1.3e-32 143.7 110 68.2
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.3e-32 143.7 175 53.1
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 2.3e-32 142.9 123 61.0
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 2.3e-32 142.9 166 55.4
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 2.3e-32 142.9 144 58.3
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 2.3e-32 142.9 148 54.1
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 5.0e-32 141.7 171 50.3
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.6e-32 141.4 117 64.1
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.6e-32 141.4 176 53.4
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 8.6e-32 141.0 163 55.8
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 1.1e-31 140.6 166 54.8
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 2.5e-31 139.4 163 52.8
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 4.3e-31 138.7 109 65.1
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 4.3e-31 138.7 109 66.1
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 4.3e-31 138.7 167 52.7
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 7.3e-31 137.9 155 54.8
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 1.6e-30 136.7 164 54.9
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 2.8e-30 136.0 165 55.8
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 8.0e-30 134.4 80 82.5
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 1.0e-29 134.0 107 66.4
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.4e-29 133.7 167 51.5
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 1.4e-29 133.7 102 67.6
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 1.4e-29 133.7 116 61.2
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 3.1e-29 132.5 106 67.0
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 3.1e-29 132.5 131 59.5
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 5.2e-29 131.7 157 49.0
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 1.2e-28 130.6 107 64.5
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 1.2e-28 130.6 143 53.1
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 1.5e-28 130.2 81 79.0
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 2.0e-28 129.8 107 63.6
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 2.0e-28 129.8 80 80.0
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 2.6e-28 129.4 107 63.6
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 2.6e-28 129.4 152 53.9
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.8e-28 128.3 152 50.7
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 5.8e-28 128.3 84 73.8
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 9.8e-28 127.5 151 51.0
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 9.8e-28 127.5 151 51.0
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 1.3e-27 127.1 107 62.6
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 2.2e-27 126.3 127 55.1
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 2.9e-27 125.9 81 74.1
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 4.9e-27 125.2 107 63.6
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 8.3e-27 124.4 152 53.3
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 8.3e-27 124.4 81 75.3
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 8.3e-27 124.4 134 55.2
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 1.4e-26 123.6 154 50.0
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 3.2e-26 122.5 167 48.5
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 4.1e-26 122.1 83 72.3
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 7.0e-26 121.3 127 53.5
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 9.2e-26 120.9 149 54.4
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 1.6e-25 120.2 100 63.0
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 1.7e-24 116.7 100 62.0
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 2.3e-24 116.3 168 47.6
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 1.1e-23 114.0 110 54.5
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.2e-22 110.5 68 75.0
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 1.1e-21 107.5 80 67.5
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 3.1e-21 105.9 156 46.2
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 5.2e-21 105.1 65 75.4
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 5.2e-21 105.1 160 45.0
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.3e-19 100.5 97 58.8
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 1.7e-19 100.1 94 56.4
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-19 99.8 97 58.8
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-19 99.8 131 48.9
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 2.2e-19 99.8 97 58.8
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 4.9e-19 98.6 115 50.4
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.4e-18 97.1 97 57.7
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 4.1e-18 95.5 167 37.7
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 1.6e-17 93.6 53 77.4
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 7.8e-17 91.3 117 44.4
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 1.0e-16 90.9 105 48.6
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 2.8e-14 82.8 109 53.2
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 8.1e-14 81.3 72 63.9
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.2e-11 73.2 90 45.6
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.9e-11 72.8 82 47.6
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 9.2e-10 67.8 83 50.6
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 2.3e-08 63.2 83 47.0
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 4.3e-07 58.9 27 96.3
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 5.6e-07 58.5 41 68.3
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.1e-06 56.6 73 43.8


User provided reference genes

Program Settings