Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1226500 Malus domestica HOM05D004512 ORTHO05D005355 2.0e-64 248.8 115 100.0
MD06G1215900 Malus domestica HOM05D004512 ORTHO05D005355 9.9e-64 246.5 114 99.1
Prupe.5G221100 Prunus persica HOM05D004512 ORTHO05D005355 1.3e-52 209.5 98 94.9
RcHm_v2.0_Chr7g0185431 Rosa chinensis HOM05D004512 ORTHO05D005355 1.8e-49 199.1 98 89.8
Lj2g0019547 Lotus japonicus HOM05D004512 ORTHO05D005355 1.5e-48 196.1 98 87.8
FAN18G1297 Fragaria x ananassa HOM05D004512 ORTHO05D005355 2.0e-48 195.7 99 87.9
FvH4_5g12140 Fragaria vesca HOM05D004512 ORTHO05D005355 7.6e-48 193.7 102 85.3
FAN04G1546 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.6e-48 193.7 102 85.3
FAN08G0397 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.6e-48 193.7 102 85.3
FAN13G2727 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.6e-48 193.7 102 85.3
FAN18G2044 Fragaria x ananassa HOM05D004512 ORTHO05D005355 7.6e-48 193.7 102 85.3
Manes.05G137500 Manihot esculenta HOM05D004512 ORTHO05D005355 1.7e-47 192.6 98 85.7
AUR62029861 Chenopodium quinoa HOM05D004512 ORTHO05D005355 4.9e-47 191.0 105 81.0
Migut.I00347 Erythranthe guttata HOM05D004512 ORTHO05D005355 8.4e-47 190.3 108 79.6
Glyma.07G091500 Glycine max HOM05D004512 ORTHO05D005355 8.4e-47 190.3 100 87.0
Manes.01G011800 Manihot esculenta HOM05D004512 ORTHO05D005355 8.4e-47 190.3 105 80.0
TPR.G27937 Trifolium pratense HOM05D004512 ORTHO05D005355 8.4e-47 190.3 98 87.8
Ca_25495_v3 Cicer arietinum L. HOM05D004512 ORTHO05D005355 1.4e-46 189.5 98 87.8
Potri.012G056900 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.4e-46 189.5 98 84.7
SalBow5G1005 Salvia bowleyana HOM05D004512 ORTHO05D005355 1.4e-46 189.5 98 83.7
Cfa019782 Carpinus fangiana HOM05D004512 ORTHO05D005355 1.9e-46 189.1 98 86.7
Haze_18669 Corylus avellana HOM05D004512 ORTHO05D005355 1.9e-46 189.1 98 86.7
Potri.015G054700 Populus trichocarpa HOM05D004512 ORTHO05D005355 1.9e-46 189.1 98 85.7
PGR142G1335 Punica granatum HOM05D004512 ORTHO05D005355 1.9e-46 189.1 100 86.0
MSTRG.22945 Avicennia marina HOM05D004512 ORTHO05D005355 3.2e-46 188.3 98 82.7
AUR62025859 Chenopodium quinoa HOM05D004512 ORTHO05D005355 3.2e-46 188.3 105 80.0
VMungo0464G1721 Vigna mungo HOM05D004512 ORTHO05D005355 5.4e-46 187.6 98 87.8
Cc04_g07140 Coffea canephora HOM05D004512 ORTHO05D005355 7.1e-46 187.2 104 82.7
Sabra12G0040400 Salix brachista HOM05D004512 ORTHO05D005355 7.1e-46 187.2 98 84.7
Hund02392 Selenicereus undatus HOM05D004512 ORTHO05D005355 7.1e-46 187.2 103 79.6
TAR374G1478 Trochodendron aralioides HOM05D004512 ORTHO05D005355 7.1e-46 187.2 98 88.8
Glyma.09G184500 Glycine max HOM05D004512 ORTHO05D005355 1.2e-45 186.4 98 86.7
Eucgr.K02221 Eucalyptus grandis HOM05D004512 ORTHO05D005355 1.6e-45 186.0 98 83.7
Oeu046994.1 Olea europaea HOM05D004512 ORTHO05D005355 1.6e-45 186.0 98 82.7
Phvul.004G157200 Phaseolus vulgaris HOM05D004512 ORTHO05D005355 1.6e-45 186.0 98 85.7
EL10Ac5g11436 Beta vulgaris HOM05D004512 ORTHO05D005355 2.1e-45 185.7 98 82.7
CSS0004107 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 2.1e-45 185.7 98 87.8
QL10p025263 Quercus lobata HOM05D004512 ORTHO05D005355 2.1e-45 185.7 103 83.5
Gohir.A09G047600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.7e-45 185.3 102 80.4
Gohir.D09G048700 Gossypium hirsutum HOM05D004512 ORTHO05D005355 2.7e-45 185.3 102 80.4
CiPaw.16G085900 Carya illinoinensis HOM05D004512 ORTHO05D005355 3.5e-45 184.9 98 86.7
Psat1g037680 Pisum sativum HOM05D004512 ORTHO05D005355 3.5e-45 184.9 96 87.5
SGA_v2.0_scaffold19G08815 Striga asiatica HOM05D004512 ORTHO05D005355 4.6e-45 184.5 105 79.0
Thecc.03G034700 Theobroma cacao HOM05D004512 ORTHO05D005355 4.6e-45 184.5 102 80.4
TAR371G0608 Trochodendron aralioides HOM05D004512 ORTHO05D005355 4.6e-45 184.5 96 89.6
arahy.Tifrunner.gnm1.ann1.HI5GUI Arachis hypogaea HOM05D004512 ORTHO05D005355 6.0e-45 184.1 97 86.6
arahy.Tifrunner.gnm1.ann1.K20T5Q Arachis hypogaea HOM05D004512 ORTHO05D005355 6.0e-45 184.1 97 86.6
THA.LOC104821841 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 6.0e-45 184.1 98 79.6
Gohir.A08G094600 Gossypium hirsutum HOM05D004512 ORTHO05D005355 1.0e-44 183.3 102 79.4
Medtr6g084520 Medicago truncatula HOM05D004512 ORTHO05D005355 1.0e-44 183.3 97 85.6
Sed0004773 Sechium edule HOM05D004512 ORTHO05D005355 1.0e-44 183.3 98 85.7
THA.LOC104820396 Tarenaya hassleriana HOM05D004512 ORTHO05D005355 1.0e-44 183.3 98 78.6
AL3G31700 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 1.3e-44 183.0 98 79.6
Atru.chr9.839 Acer truncatum HOM05D004512 ORTHO05D005355 1.7e-44 182.6 98 82.7
MELO3C002086.2 Cucumis melo HOM05D004512 ORTHO05D005355 1.7e-44 182.6 103 82.5
CsaV3_1G006620 Cucumis sativus L. HOM05D004512 ORTHO05D005355 1.7e-44 182.6 103 82.5
vmacro12793 Vaccinium macrocarpon HOM05D004512 ORTHO05D005355 1.7e-44 182.6 98 84.7
CARHR093770 Cardamine hirsuta HOM05D004512 ORTHO05D005355 2.3e-44 182.2 98 78.6
Sp1g36030 Schrenkiella parvula HOM05D004512 ORTHO05D005355 2.3e-44 182.2 98 79.6
BraA01t03675Z Brassica rapa HOM05D004512 ORTHO05D005355 3.0e-44 181.8 98 78.6
Duzib068G0917 Durio zibethinus HOM05D004512 ORTHO05D005355 3.0e-44 181.8 102 79.4
SGA_v2.0_scaffold25G10991 Striga asiatica HOM05D004512 ORTHO05D005355 3.0e-44 181.8 98 81.6
BcaB04g20765 Brassica carinata HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 78.6
BcaC09g48802 Brassica carinata HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 78.6
C01p45770 Brassica napus HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 78.6
BolC1t04540H Brassica oleracea HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 78.6
Cpa.g.sc3.515 Carica papaya HOM05D004512 ORTHO05D005355 3.9e-44 181.4 103 79.6
Gohir.D08G105800 Gossypium hirsutum HOM05D004512 ORTHO05D005355 3.9e-44 181.4 102 79.4
Gorai.004G113100 Gossypium raimondii HOM05D004512 ORTHO05D005355 3.9e-44 181.4 102 79.4
Hma1.2p1_0653F.1_g196320 Hydrangea macrophylla HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 86.7
Lalb_Chr22g0353061 Lupinus albus HOM05D004512 ORTHO05D005355 3.9e-44 181.4 98 84.7
Nitab4.5_0006638g0020 Nicotiana tabacum HOM05D004512 ORTHO05D005355 3.9e-44 181.4 103 82.5
PGSC0003DMG400023110 Solanum tuberosum HOM05D004512 ORTHO05D005355 3.9e-44 181.4 103 81.6
AT3G18410 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 5.1e-44 181.0 98 78.6
A03p40660 Brassica napus HOM05D004512 ORTHO05D005355 5.1e-44 181.0 98 78.6
BraA03t13222Z Brassica rapa HOM05D004512 ORTHO05D005355 5.1e-44 181.0 98 78.6
Carub.0003s1819 Capsella rubella HOM05D004512 ORTHO05D005355 5.1e-44 181.0 98 78.6
Nitab4.5_0000208g0260 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.1e-44 181.0 103 81.6
Sc12g0007720 Simmondsia chinensis HOM05D004512 ORTHO05D005355 5.1e-44 181.0 103 80.6
AL1G56000 Arabidopsis lyrata HOM05D004512 ORTHO05D005355 6.6e-44 180.6 98 77.6
CSS0044395 Camellia sinensis var. sinensis HOM05D004512 ORTHO05D005355 6.6e-44 180.6 96 87.5
Gorai.006G061400 Gossypium raimondii HOM05D004512 ORTHO05D005355 6.6e-44 180.6 97 82.5
Sp3g16520 Schrenkiella parvula HOM05D004512 ORTHO05D005355 6.6e-44 180.6 105 75.2
Aqoxy3G00301 Aquilegia oxysepala HOM05D004512 ORTHO05D005355 8.7e-44 180.3 103 79.6
CARHR039120 Cardamine hirsuta HOM05D004512 ORTHO05D005355 8.7e-44 180.3 98 77.6
CiPaw.15G130400 Carya illinoinensis HOM05D004512 ORTHO05D005355 8.7e-44 180.3 98 82.7
ClCG04G011140 Citrullus lanatus HOM05D004512 ORTHO05D005355 8.7e-44 180.3 101 83.2
Duzib205G0602 Durio zibethinus HOM05D004512 ORTHO05D005355 8.7e-44 180.3 102 78.4
Duzib205G1322 Durio zibethinus HOM05D004512 ORTHO05D005355 8.7e-44 180.3 102 78.4
Sopen12g018390 Solanum pennellii HOM05D004512 ORTHO05D005355 8.7e-44 180.3 103 82.5
BcaC01g03699 Brassica carinata HOM05D004512 ORTHO05D005355 1.1e-43 179.9 98 77.6
BolC3t17241H Brassica oleracea HOM05D004512 ORTHO05D005355 1.1e-43 179.9 98 77.6
Thhalv10022379m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 1.1e-43 179.9 98 77.6
Aa31LG10G4840 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.5e-43 179.5 104 75.0
AT1G49140 Arabidopsis thaliana HOM05D004512 ORTHO05D005355 1.5e-43 179.5 98 77.6
Carub.0001s3830 Capsella rubella HOM05D004512 ORTHO05D005355 1.5e-43 179.5 98 77.6
A01p35940 Brassica napus HOM05D004512 ORTHO05D005355 1.9e-43 179.1 97 78.4
HPP92_020802 Vanilla planifolia HOM05D004512 ORTHO05D005355 2.5e-43 178.7 102 80.4
CANSAT80G1137 Cannabis sativa HOM05D004512 ORTHO05D005355 3.3e-43 178.3 98 82.7
CANSAT80G2616 Cannabis sativa HOM05D004512 ORTHO05D005355 3.3e-43 178.3 98 82.7
Thhalv10011884m.g Eutrema salsugineum HOM05D004512 ORTHO05D005355 3.3e-43 178.3 98 76.5
Rhsim12G0143400 Rhododendron simsii HOM05D004512 ORTHO05D005355 3.3e-43 178.3 98 80.6
BcaB04g18985 Brassica carinata HOM05D004512 ORTHO05D005355 4.3e-43 177.9 98 76.5
BcaB06g25886 Brassica carinata HOM05D004512 ORTHO05D005355 5.6e-43 177.6 98 77.6
CAN.G121.2 Capsicum annuum HOM05D004512 ORTHO05D005355 5.6e-43 177.6 99 81.8
C03p49450 Brassica napus HOM05D004512 ORTHO05D005355 7.3e-43 177.2 97 77.3
TWI81G1036 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 7.3e-43 177.2 103 76.7
Ciclev10022984m.g Citrus clementina HOM05D004512 ORTHO05D005355 1.3e-42 176.4 98 82.7
Aa31LG8G5240 Aethionema arabicum HOM05D004512 ORTHO05D005355 1.6e-42 176.0 98 76.5
BcaC05g28630 Brassica carinata HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 76.5
A05p31210 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 76.5
C05p47340 Brassica napus HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 76.5
BolC5t33461H Brassica oleracea HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 76.5
BraA05t21962Z Brassica rapa HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 76.5
CAN.G790.56 Capsicum annuum HOM05D004512 ORTHO05D005355 2.1e-42 175.6 97 83.5
Lalb_Chr24g0397761 Lupinus albus HOM05D004512 ORTHO05D005355 2.1e-42 175.6 98 82.7
ClCG00G005470 Citrullus lanatus HOM05D004512 ORTHO05D005355 2.8e-42 175.3 96 84.4
DCAR_011353 Daucus carota HOM05D004512 ORTHO05D005355 3.6e-42 174.9 105 79.0
Lsat_1_v5_gn_8_144301 Lactuca sativa HOM05D004512 ORTHO05D005355 3.6e-42 174.9 102 83.3
PSO782G2824 Papaver somniferum HOM05D004512 ORTHO05D005355 4.8e-42 174.5 98 80.6
Peaxi162Scf00634g00116 Petunia axillaris HOM05D004512 ORTHO05D005355 1.1e-41 173.3 98 82.7
Sed0021676 Sechium edule HOM05D004512 ORTHO05D005355 1.1e-41 173.3 97 81.4
DCAR_015141 Daucus carota HOM05D004512 ORTHO05D005355 1.4e-41 172.9 98 83.7
ECA233G5146 Erigeron canadensis HOM05D004512 ORTHO05D005355 3.1e-41 171.8 103 79.6
Solyc12g036790.2 Solanum lycopersicum HOM05D004512 ORTHO05D005355 3.1e-41 171.8 97 83.5
HanXRQChr08g0226081 Helianthus annuus HOM05D004512 ORTHO05D005355 4.0e-41 171.4 105 80.0
CDE12G0498 Ceratophyllum demersum HOM05D004512 ORTHO05D005355 5.3e-41 171.0 98 82.7
Zm00001eb024750 Zea mays HOM05D004512 ORTHO05D005355 2.2e-39 165.6 95 77.9
Zm00001eb224900 Zea mays HOM05D004512 ORTHO05D005355 2.9e-39 165.2 95 77.9
TWI60G0557 Tripterygium wilfordii HOM05D004512 ORTHO05D005355 1.1e-38 163.3 94 76.6
unitig_26.g9674 Utricularia gibba HOM05D004512 ORTHO05D005355 1.4e-38 162.9 103 70.9
unitig_749.g13425 Utricularia gibba HOM05D004512 ORTHO05D005355 1.9e-38 162.5 103 70.9
ATR1125G038 Amborella trichopoda HOM05D004512 ORTHO05D005355 2.4e-38 162.2 93 75.3
Nitab4.5_0007985g0060 Nicotiana tabacum HOM05D004512 ORTHO05D005355 5.6e-35 151.0 87 74.7
HanXRQChr16g0517341 Helianthus annuus HOM05D004512 ORTHO05D005355 1.8e-33 146.0 85 82.4
Nn3g17841 Nelumbo nucifera HOM05D004512 ORTHO05D005355 2.9e-31 138.7 68 89.7
MD14G1197200 Malus domestica HOM05D004512 ORTHO05D005355 4.9e-31 137.9 75 88.0
MD15G1306200 Malus domestica HOM05D004512 ORTHO05D005355 4.9e-31 137.9 75 84.0
COL.COLO4_05967 Corchorus olitorius HOM05D004512 ORTHO05D005355 1.2e-29 133.3 76 78.9
AagrBONN_evm.TU.Sc2ySwM_117.17 Anthoceros agrestis HOM05D004512 ORTHO05D005355 3.3e-27 125.2 92 64.1
AagrBONN_evm.TU.Sc2ySwM_228.463 Anthoceros agrestis HOM05D004512 ORTHO05D005355 5.7e-27 124.4 92 64.1
Prupe.1G218000 Prunus persica HOM05D004512 ORTHO05D005355 2.1e-26 122.5 98 63.3
Prupe.2G045100 Prunus persica HOM05D004512 ORTHO05D005355 2.1e-26 122.5 71 80.3
CAN.G519.12 Capsicum annuum HOM05D004512 ORTHO05D005355 2.8e-26 122.1 72 77.8
CAN.G133.16 Capsicum annuum HOM05D004512 ORTHO05D005355 8.2e-26 120.6 69 82.6
Mapoly0004s0055 Marchantia polymorpha HOM05D004512 ORTHO05D005355 8.2e-26 120.6 83 66.3
Pp3c9_26150 Physcomitrium patens HOM05D004512 ORTHO05D005355 1.1e-25 120.2 83 67.5
SMO169G0039 Selaginella moellendorffii HOM05D004512 ORTHO05D005355 2.9e-23 112.1 84 56.0
CBR_g39222 Chara braunii HOM05D006171 ORTHO05D007294 3.2e-22 108.6 86 60.5
Os10g0576000 Oryza sativa ssp. japonica HOM05D004512 ORTHO05D005355 2.2e-18 95.9 51 80.4
BcaB02g11300 Brassica carinata HOM05D004512 ORTHO05D005355 2.6e-16 89.0 69 59.4
MCO12G018 Micromonas commoda HOM05D004512 ORTHO05D005355 3.8e-15 85.1 71 50.7
Duzib084G0409 Durio zibethinus HOM05D004512 ORTHO05D005355 5.5e-14 81.3 54 68.5
SEGI_01620 Sequoiadendron giganteum HOM05D004512 ORTHO05D005355 5.5e-14 81.3 50 74.0
Actinidia35087 Actinidia chinensis HOM05D004512 ORTHO05D005355 2.8e-10 68.9 37 89.2
Dinv09796 Davidia involucrata HOM05D004512 ORTHO05D005355 2.8e-10 68.9 37 89.2
PRCOL_00001312 Prasinoderma coloniale HOM05D004512 ORTHO05D005355 2.8e-10 68.9 76 44.7
Nitab4.5_0001194g0030 Nicotiana tabacum HOM05D004512 ORTHO05D005355 1.4e-09 66.6 49 65.3
GSVIVG01008282001 Vitis vinifera HOM05D004512 ORTHO05D005355 2.5e-06 55.8 28 82.1


User provided reference genes

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