Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1222600 Malus domestica HOM05D007790 ORTHO05D009880 2.2e-25 118.2 62 100.0
MD06G1212000 Malus domestica HOM05D007790 ORTHO05D009880 1.6e-23 112.1 60 96.7
RcHm_v2.0_Chr7g0184711 Rosa chinensis HOM05D007790 ORTHO05D009880 7.0e-16 86.7 56 80.4
Cfa019804 Carpinus fangiana HOM05D007790 ORTHO05D009880 2.0e-15 85.1 59 69.5
CiPaw.16G084400 Carya illinoinensis HOM05D007790 ORTHO05D009880 2.0e-15 85.1 59 71.2
Haze_18633 Corylus avellana HOM05D007790 ORTHO05D009880 2.0e-15 85.1 59 69.5
Duzib068G0515 Durio zibethinus HOM05D007790 ORTHO05D009880 2.7e-15 84.7 55 76.4
FAN04G3172 Fragaria x ananassa HOM05D007790 ORTHO05D009880 7.8e-15 83.2 56 78.6
FAN13G0824 Fragaria x ananassa HOM05D007790 ORTHO05D009880 7.8e-15 83.2 56 78.6
Gohir.D12G266000 Gossypium hirsutum HOM05D007790 ORTHO05D009880 7.8e-15 83.2 55 72.7
Gorai.008G285700 Gossypium raimondii HOM05D007790 ORTHO05D009880 7.8e-15 83.2 55 72.7
Sed0012152 Sechium edule HOM05D007790 ORTHO05D009880 7.8e-15 83.2 62 67.7
Thecc.03G029600 Theobroma cacao HOM05D007790 ORTHO05D009880 1.3e-14 82.4 55 72.7
Gohir.A12G265800 Gossypium hirsutum HOM05D007790 ORTHO05D009880 1.7e-14 82.0 55 70.9
FvH4_5g12630 Fragaria vesca HOM05D007790 ORTHO05D009880 2.3e-14 81.6 56 76.8
FAN18G4544 Fragaria x ananassa HOM05D007790 ORTHO05D009880 2.3e-14 81.6 56 76.8
FAN18G2988 Fragaria x ananassa HOM05D007790 ORTHO05D009880 5.0e-14 80.5 56 75.0
Atru.chr9.781 Acer truncatum HOM05D007790 ORTHO05D009880 6.6e-14 80.1 56 76.8
Potri.011G140300 Populus trichocarpa HOM05D007790 ORTHO05D009880 1.1e-13 79.3 55 70.9
CANSAT64G1586 Cannabis sativa HOM05D007790 ORTHO05D009880 2.5e-13 78.2 55 74.5
Cpa.g.sc13.39 Carica papaya HOM05D007790 ORTHO05D009880 2.5e-13 78.2 55 72.7
arahy.Tifrunner.gnm1.ann1.ZI6FWF Arachis hypogaea HOM05D007790 ORTHO05D009880 7.3e-13 76.6 61 63.9
Ciclev10023249m.g Citrus clementina HOM05D007790 ORTHO05D009880 1.2e-12 75.9 61 70.5
ClCG06G014960 Citrullus lanatus HOM05D007790 ORTHO05D009880 2.1e-12 75.1 55 63.6
Eucgr.K02661 Eucalyptus grandis HOM05D007790 ORTHO05D009880 2.1e-12 75.1 58 65.5
Manes.01G020200 Manihot esculenta HOM05D007790 ORTHO05D009880 2.1e-12 75.1 55 63.6
Psat3g006760 Pisum sativum HOM05D007790 ORTHO05D009880 2.1e-12 75.1 55 70.9
Phvul.003G060000 Phaseolus vulgaris HOM05D007790 ORTHO05D009880 2.8e-12 74.7 57 66.7
arahy.Tifrunner.gnm1.ann1.11NJV3 Arachis hypogaea HOM05D007790 ORTHO05D009880 3.6e-12 74.3 61 60.7
Ca_09459_v3 Cicer arietinum L. HOM05D007790 ORTHO05D009880 3.6e-12 74.3 57 66.7
Lj2g0008445 Lotus japonicus HOM05D007790 ORTHO05D009880 3.6e-12 74.3 57 64.9
PGR044G0624 Punica granatum HOM05D007790 ORTHO05D009880 3.6e-12 74.3 60 65.0
Actinidia18942 Actinidia chinensis HOM05D007790 ORTHO05D009880 8.1e-12 73.2 56 71.4
Actinidia35077 Actinidia chinensis HOM05D007790 ORTHO05D009880 8.1e-12 73.2 56 69.6
Lalb_Chr09g0331121 Lupinus albus HOM05D007790 ORTHO05D009880 8.1e-12 73.2 57 70.2
Medtr7g115600 Medicago truncatula HOM05D007790 ORTHO05D009880 2.3e-11 71.6 57 66.7
Aa31LG8G5350 Aethionema arabicum HOM05D007790 ORTHO05D009880 3.1e-11 71.2 59 57.6
Glyma.02G139000 Glycine max HOM05D007790 ORTHO05D009880 3.1e-11 71.2 61 59.0
Glyma.07G088700 Glycine max HOM05D007790 ORTHO05D009880 3.1e-11 71.2 61 59.0
Hma1.2p1_0151F.1_g067280 Hydrangea macrophylla HOM05D007790 ORTHO05D009880 3.1e-11 71.2 55 67.3
TWI81G0366 Tripterygium wilfordii HOM05D007790 ORTHO05D009880 3.1e-11 71.2 55 65.5
THA.LOC109116948 Tarenaya hassleriana HOM05D007790 ORTHO05D009880 1.2e-10 69.3 50 64.0
Sc10g0009520 Simmondsia chinensis HOM05D007790 ORTHO05D009880 1.5e-10 68.9 53 67.9
A05p31120 Brassica napus HOM05D007790 ORTHO05D009880 2.0e-10 68.6 53 62.3
BraA05t21954Z Brassica rapa HOM05D007790 ORTHO05D009880 2.0e-10 68.6 53 62.3
BcaB06g25895 Brassica carinata HOM05D007790 ORTHO05D009880 2.6e-10 68.2 62 59.7
CsaV3_1G003680 Cucumis sativus L. HOM05D007790 ORTHO05D009880 2.6e-10 68.2 45 66.7
MELO3C017293.2 Cucumis melo HOM05D007790 ORTHO05D009880 4.4e-10 67.4 45 68.9
SalBow2G0723 Salvia bowleyana HOM05D007790 ORTHO05D009880 4.4e-10 67.4 60 56.7
BcaC05g28610 Brassica carinata HOM05D007790 ORTHO05D009880 7.5e-10 66.6 49 65.3
C05p47140 Brassica napus HOM05D007790 ORTHO05D009880 7.5e-10 66.6 49 65.3
BolC5t33440H Brassica oleracea HOM05D007790 ORTHO05D009880 7.5e-10 66.6 49 65.3
Thhalv10021890m.g Eutrema salsugineum HOM05D007790 ORTHO05D009880 9.8e-10 66.2 49 65.3
Nitab4.5_0000410g0040 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.2e-09 65.1 55 60.0
Nitab4.5_0001599g0140 Nicotiana tabacum HOM05D007790 ORTHO05D009880 2.2e-09 65.1 55 60.0
BolC1t04534H Brassica oleracea HOM05D007790 ORTHO05D009880 2.9e-09 64.7 49 63.3
Solyc03g119723.1 Solanum lycopersicum HOM05D007790 ORTHO05D009880 2.9e-09 64.7 55 58.2
Sopen03g038570 Solanum pennellii HOM05D007790 ORTHO05D009880 2.9e-09 64.7 55 58.2
vmacro22488 Vaccinium macrocarpon HOM05D007790 ORTHO05D009880 2.9e-09 64.7 49 69.4
DCAR_011206 Daucus carota HOM05D007790 ORTHO05D009880 3.7e-09 64.3 48 64.6
Peaxi162Scf00015g00827 Petunia axillaris HOM05D007790 ORTHO05D009880 3.7e-09 64.3 58 58.6
CSS0043662 Camellia sinensis var. sinensis HOM05D007790 ORTHO05D009880 4.9e-09 63.9 56 64.3
Migut.I00921 Erythranthe guttata HOM05D007790 ORTHO05D009880 4.9e-09 63.9 58 58.6
SGA_v2.0_scaffold569G52962 Striga asiatica HOM05D007790 ORTHO05D009880 4.9e-09 63.9 60 60.0
BcaC09g48808 Brassica carinata HOM05D007790 ORTHO05D009880 6.4e-09 63.5 49 61.2
C01p45710 Brassica napus HOM05D007790 ORTHO05D009880 6.4e-09 63.5 49 61.2
Sp3g16600 Schrenkiella parvula HOM05D007790 ORTHO05D009880 8.3e-09 63.2 53 58.5
EL10Ac1g02162 Beta vulgaris HOM05D007790 ORTHO05D009880 1.4e-08 62.4 48 66.7
BcaB04g20771 Brassica carinata HOM05D007790 ORTHO05D009880 1.4e-08 62.4 49 61.2
Carub.0003s1829 Capsella rubella HOM05D007790 ORTHO05D009880 1.4e-08 62.4 49 61.2
AT3G18510 Arabidopsis thaliana HOM05D007790 ORTHO05D009880 1.9e-08 62.0 53 54.7
Hund18110 Selenicereus undatus HOM05D007790 ORTHO05D009880 1.9e-08 62.0 50 62.0
Cc04_g07440 Coffea canephora HOM05D007790 ORTHO05D009880 2.4e-08 61.6 63 54.0
PSO782G1288 Papaver somniferum HOM05D007790 ORTHO05D009880 5.4e-08 60.5 60 60.0
SGA_v2.0_scaffold69G23333 Striga asiatica HOM05D027511 ORTHO05D009880 7.1e-08 60.1 56 60.7
ATR0681G001 Amborella trichopoda HOM05D007790 ORTHO05D009880 1.2e-07 59.3 54 55.6
CARHR093880 Cardamine hirsuta HOM05D007790 ORTHO05D009880 1.2e-07 59.3 49 61.2
Lsat_1_v5_gn_5_25161 Lactuca sativa HOM05D007790 ORTHO05D009880 1.6e-07 58.9 56 57.1
Os06g0618300 Oryza sativa ssp. japonica HOM05D007790 ORTHO05D009880 2.1e-07 58.5 56 57.1
AL3G31810 Arabidopsis lyrata HOM05D007790 ORTHO05D009880 2.7e-07 58.2 50 54.0
unitig_748.g8096 Utricularia gibba HOM05D007790 ORTHO05D009880 2.7e-07 58.2 50 60.0


User provided reference genes

Program Settings