Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1221300 Malus domestica HOM05D005816 ORTHO05D006915 3.0e-63 245.0 119 100.0
MD06G1210600 Malus domestica HOM05D005816 ORTHO05D006915 1.8e-52 209.1 122 87.7
Prupe.5G216700 Prunus persica HOM05D005816 ORTHO05D006915 1.1e-33 146.7 126 66.7
Duzib205G0672 Durio zibethinus HOM05D005816 ORTHO05D006915 1.3e-18 96.7 120 50.8
Manes.05G118800 Manihot esculenta HOM05D005816 ORTHO05D006915 2.2e-18 95.9 117 49.6
Thecc.03G027700 Theobroma cacao HOM05D005816 ORTHO05D006915 5.0e-18 94.7 112 55.4
COL.COLO4_22708 Corchorus olitorius HOM05D005816 ORTHO05D006915 1.4e-15 86.7 112 50.0
Gorai.007G007600 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.8e-15 86.3 124 46.8
Gohir.D11G006300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.1e-15 84.7 124 46.0
QL01p001040 Quercus lobata HOM05D005816 ORTHO05D006915 5.1e-15 84.7 118 47.5
Gohir.A11G007200 Gossypium hirsutum HOM05D005816 ORTHO05D006915 6.7e-15 84.3 124 46.0
Nn3g17700 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.5e-14 83.2 118 46.6
Lalb_Chr21g0313371 Lupinus albus HOM05D005816 ORTHO05D006915 4.3e-14 81.6 116 49.1
PGR119G1376 Punica granatum HOM05D005816 ORTHO05D006915 5.7e-14 81.3 120 45.8
FvH4_5g12751 Fragaria vesca HOM05D005816 ORTHO05D006915 1.3e-13 80.1 120 45.0
Gohir.A07G038800 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.3e-13 80.1 120 45.0
Aqoxy3G00384 Aquilegia oxysepala HOM05D005816 ORTHO05D006915 1.7e-13 79.7 117 45.3
Nn4g23710 Nelumbo nucifera HOM05D005816 ORTHO05D006915 1.7e-13 79.7 128 42.2
FAN18G0325 Fragaria x ananassa HOM05D005816 ORTHO05D006915 2.2e-13 79.3 121 45.5
Phvul.007G101800 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 2.8e-13 79.0 114 48.2
Gohir.D07G042900 Gossypium hirsutum HOM05D005816 ORTHO05D006915 4.8e-13 78.2 120 45.8
CiPaw.15G002700 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.3e-13 77.8 126 42.1
TAR629G1032 Trochodendron aralioides HOM05D005816 ORTHO05D006915 6.3e-13 77.8 117 48.7
Thecc.02G362100 Theobroma cacao HOM05D005816 ORTHO05D006915 8.2e-13 77.4 114 47.4
Glyma.10G205100 Glycine max HOM05D005816 ORTHO05D006915 1.1e-12 77.0 115 47.0
CSS0007623 Camellia sinensis var. sinensis HOM05D005816 ORTHO05D006915 2.4e-12 75.9 118 43.2
Glyma.20G185400 Glycine max HOM05D005816 ORTHO05D006915 2.4e-12 75.9 116 45.7
SalBow8G0077 Salvia bowleyana HOM05D005816 ORTHO05D006915 2.4e-12 75.9 116 46.6
VMungo0720G2795 Vigna mungo HOM05D005816 ORTHO05D006915 2.4e-12 75.9 116 49.1
Phvul.003G177600 Phaseolus vulgaris HOM05D005816 ORTHO05D006915 4.1e-12 75.1 124 41.9
Gorai.001G045900 Gossypium raimondii HOM05D005816 ORTHO05D006915 5.3e-12 74.7 120 45.0
Lalb_Chr10g0099661 Lupinus albus HOM05D005816 ORTHO05D006915 6.9e-12 74.3 114 45.6
Ciclev10033717m.g Citrus clementina HOM05D005816 ORTHO05D006915 9.1e-12 73.9 127 43.3
Atru.chr9.746 Acer truncatum HOM05D005816 ORTHO05D006915 1.2e-11 73.6 66 60.6
Manes.06G073000 Manihot esculenta HOM05D005816 ORTHO05D006915 1.5e-11 73.2 125 44.0
TPR.G9813 Trifolium pratense HOM05D005816 ORTHO05D006915 2.0e-11 72.8 117 47.0
PGSC0003DMG400005703 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.5e-11 71.6 111 43.2
HanXRQChr05g0149681 Helianthus annuus HOM05D005816 ORTHO05D006915 5.9e-11 71.2 114 43.9
Manes.14G096700 Manihot esculenta HOM05D005816 ORTHO05D006915 5.9e-11 71.2 120 45.8
Lsat_1_v5_gn_4_19200 Lactuca sativa HOM05D005816 ORTHO05D006915 7.7e-11 70.9 120 45.0
Sed0000064 Sechium edule HOM05D005816 ORTHO05D006915 7.7e-11 70.9 118 47.5
Sopen03g038660 Solanum pennellii HOM05D005816 ORTHO05D006915 1.3e-10 70.1 111 43.2
FAN07G2890 Fragaria x ananassa HOM05D005816 ORTHO05D006915 1.7e-10 69.7 68 51.5
CiPaw.15G126000 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.2e-10 69.3 113 42.5
Duzib251G0462 Durio zibethinus HOM05D005816 ORTHO05D006915 2.2e-10 69.3 114 42.1
Lalb_Chr07g0178581 Lupinus albus HOM05D005816 ORTHO05D006915 2.2e-10 69.3 127 37.8
CiPaw.16G083700 Carya illinoinensis HOM05D005816 ORTHO05D006915 2.9e-10 68.9 116 46.6
Sabra08G0087500 Salix brachista HOM05D005816 ORTHO05D006915 2.9e-10 68.9 121 43.0
Carub.0002s2074 Capsella rubella HOM05D005816 ORTHO05D006915 3.8e-10 68.6 121 40.5
Oeu041876.1 Olea europaea HOM05D005816 ORTHO05D006915 3.8e-10 68.6 118 42.4
Potri.012G059600 Populus trichocarpa HOM05D005816 ORTHO05D006915 3.8e-10 68.6 112 43.8
CiPaw.16G002600 Carya illinoinensis HOM05D005816 ORTHO05D006915 6.5e-10 67.8 109 42.2
COL.COLO4_07860 Corchorus olitorius HOM05D005816 ORTHO05D006915 6.5e-10 67.8 119 43.7
Glyma.05G013600 Glycine max HOM05D005816 ORTHO05D006915 6.5e-10 67.8 127 39.4
Atru.chr11.1371 Acer truncatum HOM05D005816 ORTHO05D006915 8.5e-10 67.4 120 44.2
Dinv36900 Davidia involucrata HOM05D005816 ORTHO05D006915 8.5e-10 67.4 66 59.1
FvH4_4g28190 Fragaria vesca HOM05D005816 ORTHO05D006915 8.5e-10 67.4 119 41.2
FAN12G1213 Fragaria x ananassa HOM05D005816 ORTHO05D006915 8.5e-10 67.4 119 41.2
Gohir.A13G071300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 8.5e-10 67.4 114 39.5
Medtr8g076990 Medicago truncatula HOM05D005816 ORTHO05D006915 8.5e-10 67.4 76 47.4
Cc11_g10680 Coffea canephora HOM05D005816 ORTHO05D006915 1.1e-09 67.0 111 41.4
Migut.L01100 Erythranthe guttata HOM05D005816 ORTHO05D006915 1.1e-09 67.0 116 42.2
Gorai.013G079400 Gossypium raimondii HOM05D005816 ORTHO05D006915 1.1e-09 67.0 114 39.5
Lsat_1_v5_gn_3_58221 Lactuca sativa HOM05D005816 ORTHO05D006915 1.1e-09 67.0 77 48.1
QL10p023002 Quercus lobata HOM05D005816 ORTHO05D006915 1.1e-09 67.0 112 41.1
Duzib248G0754 Durio zibethinus HOM05D005816 ORTHO05D006915 1.4e-09 66.6 114 39.5
TPR.G26768 Trifolium pratense HOM05D005816 ORTHO05D006915 1.9e-09 66.2 125 39.2
Manes.01G021100 Manihot esculenta HOM05D005816 ORTHO05D006915 3.2e-09 65.5 87 46.0
BcaC08g46825 Brassica carinata HOM05D005816 ORTHO05D006915 4.2e-09 65.1 107 41.1
CARHR067080 Cardamine hirsuta HOM05D005816 ORTHO05D006915 4.2e-09 65.1 114 42.1
Migut.E00293 Erythranthe guttata HOM05D005816 ORTHO05D006915 4.2e-09 65.1 66 48.5
FAN17G1568 Fragaria x ananassa HOM05D005816 ORTHO05D006915 4.2e-09 65.1 120 41.7
Hma1.2p1_0862F.1_g229870 Hydrangea macrophylla HOM05D005816 ORTHO05D006915 4.2e-09 65.1 117 39.3
PGSC0003DMG400000830 Solanum tuberosum HOM05D005816 ORTHO05D006915 4.2e-09 65.1 117 39.3
Carub.0002s1536 Capsella rubella HOM05D005816 ORTHO05D006915 7.2e-09 64.3 121 35.5
Gohir.D13G069300 Gossypium hirsutum HOM05D005816 ORTHO05D006915 7.2e-09 64.3 114 39.5
Potri.008G115600 Populus trichocarpa HOM05D005816 ORTHO05D006915 7.2e-09 64.3 117 43.6
Medtr1g093800 Medicago truncatula HOM05D005816 ORTHO05D006915 9.4e-09 63.9 116 45.7
RcHm_v2.0_Chr4g0435951 Rosa chinensis HOM05D005816 ORTHO05D006915 9.4e-09 63.9 123 39.0
MELO3C005357.2 Cucumis melo HOM05D005816 ORTHO05D006915 1.2e-08 63.5 118 41.5
BcaB05g24412 Brassica carinata HOM05D005816 ORTHO05D006915 2.1e-08 62.8 121 41.3
HanXRQChr16g0528861 Helianthus annuus HOM05D005816 ORTHO05D006915 2.1e-08 62.8 120 40.8
Prupe.1G304500 Prunus persica HOM05D005816 ORTHO05D006915 2.1e-08 62.8 136 39.0
PGR044G2006 Punica granatum HOM05D005816 ORTHO05D006915 2.7e-08 62.4 119 37.0
AL2G27750 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 3.6e-08 62.0 120 43.3
Eucgr.G02356 Eucalyptus grandis HOM05D005816 ORTHO05D006915 3.6e-08 62.0 123 39.8
Thhalv10019753m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 4.7e-08 61.6 118 41.5
Lsat_1_v5_gn_4_112260 Lactuca sativa HOM05D005816 ORTHO05D006915 4.7e-08 61.6 69 56.5
Thhalv10019343m.g Eutrema salsugineum HOM05D005816 ORTHO05D006915 6.1e-08 61.2 120 42.5
Potri.010G130400 Populus trichocarpa HOM05D005816 ORTHO05D006915 6.1e-08 61.2 109 42.2
Solyc05g009915.1 Solanum lycopersicum HOM05D005816 ORTHO05D006915 6.1e-08 61.2 120 39.2
C06p48080 Brassica napus HOM05D005816 ORTHO05D006915 7.9e-08 60.8 109 41.3
BolC6t39843H Brassica oleracea HOM05D005816 ORTHO05D006915 7.9e-08 60.8 107 41.1
Sopen05g005720 Solanum pennellii HOM05D005816 ORTHO05D006915 7.9e-08 60.8 75 50.7
AL2G33800 Arabidopsis lyrata HOM05D005816 ORTHO05D006915 1.0e-07 60.5 115 37.4
MBI16_g06255_MAGBIO Magnolia biondii HOM05D005816 ORTHO05D006915 1.8e-07 59.7 109 41.3
AT1G73965 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 2.3e-07 59.3 116 37.9
BcaB03g15849 Brassica carinata HOM05D005816 ORTHO05D006915 2.3e-07 59.3 124 39.5
Glyma.17G121800 Glycine max HOM05D005816 ORTHO05D006915 3.0e-07 58.9 123 39.0
AT1G68795 Arabidopsis thaliana HOM05D005816 ORTHO05D006915 3.9e-07 58.5 118 39.8
CARHR061620 Cardamine hirsuta HOM05D005816 ORTHO05D006915 3.9e-07 58.5 115 41.7
BcaC08g46328 Brassica carinata HOM05D005816 ORTHO05D006915 5.1e-07 58.2 123 39.0
BolC6t39316H Brassica oleracea HOM05D005816 ORTHO05D006915 5.1e-07 58.2 123 39.0
Cpa.g.sc13.61 Carica papaya HOM05D005816 ORTHO05D006915 5.1e-07 58.2 65 49.2
Eucgr.B00694 Eucalyptus grandis HOM05D005816 ORTHO05D006915 5.1e-07 58.2 116 40.5
A07p39820 Brassica napus HOM05D005816 ORTHO05D006915 6.7e-07 57.8 117 39.3
BraA07t31528Z Brassica rapa HOM05D005816 ORTHO05D006915 6.7e-07 57.8 117 39.3
Oeu024099.1 Olea europaea HOM05D005816 ORTHO05D006915 6.7e-07 57.8 68 51.5
Oeu044626.1 Olea europaea HOM05D005816 ORTHO05D006915 8.8e-07 57.4 115 39.1
VMungo1215G1388 Vigna mungo HOM05D005816 ORTHO05D006915 8.8e-07 57.4 77 44.2
Aa31LG4G4260 Aethionema arabicum HOM05D005816 ORTHO05D006915 1.1e-06 57.0 93 41.9
Gohir.D02G116175 Gossypium hirsutum HOM05D005816 ORTHO05D006915 1.5e-06 56.6 109 41.3
ClCG01G005730 Citrullus lanatus HOM05D005816 ORTHO05D006915 2.0e-06 56.2 108 38.9
Sp5g29165 Schrenkiella parvula HOM05D005816 ORTHO05D006915 2.0e-06 56.2 119 37.8
BcaC03g14990 Brassica carinata HOM05D005816 ORTHO05D006915 2.6e-06 55.8 76 50.0
Lalb_Chr13g0302361 Lupinus albus HOM05D005816 ORTHO05D006915 2.6e-06 55.8 121 36.4
ATR0681G007 Amborella trichopoda HOM05D005816 ORTHO05D006915 4.4e-06 55.1 115 34.8
MELO3C017284.2 Cucumis melo HOM05D005816 ORTHO05D006915 5.7e-06 54.7 113 37.2
Gohir.A03G097050 Gossypium hirsutum HOM05D005816 ORTHO05D006915 5.7e-06 54.7 109 40.4
Sc11g0003040 Simmondsia chinensis HOM05D005816 ORTHO05D006915 5.7e-06 54.7 75 46.7


User provided reference genes

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