Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1220900 Malus domestica HOM05D000030 ORTHO05D009563 2.1e-76 288.9 142 100.0
MD06G1210000 Malus domestica HOM05D000030 ORTHO05D009563 3.9e-46 188.3 134 75.4
Prupe.5G216200 Prunus persica HOM05D000030 ORTHO05D009563 7.9e-39 164.1 134 66.4
ClCG02G014930 Citrullus lanatus HOM05D000030 ORTHO05D009563 1.4e-38 163.3 134 62.7
Atru.chr9.734 Acer truncatum HOM05D000030 ORTHO05D009563 5.7e-37 157.9 134 61.2
GSVIVG01008224001 Vitis vinifera HOM05D000030 ORTHO05D009563 3.7e-36 155.2 134 61.9
Dinv36894 Davidia involucrata HOM05D000030 ORTHO05D009563 6.3e-36 154.5 133 61.7
Duzib068G1203 Durio zibethinus HOM05D000030 ORTHO05D009563 6.3e-36 154.5 134 60.4
MELO3C031531.2 Cucumis melo HOM05D000030 ORTHO05D009563 1.8e-35 152.9 134 59.0
COL.COLO4_22696 Corchorus olitorius HOM05D000030 ORTHO05D009563 2.4e-35 152.5 136 59.6
RcHm_v2.0_Chr7g0184431 Rosa chinensis HOM05D000030 ORTHO05D009563 2.4e-35 152.5 140 62.9
CSS0033246 Camellia sinensis var. sinensis HOM05D000030 ORTHO05D009563 3.1e-35 152.1 134 59.0
Sed0016338 Sechium edule HOM05D000030 ORTHO05D009563 3.1e-35 152.1 134 61.2
Haze_18592 Corylus avellana HOM05D000030 ORTHO05D009563 7.0e-35 151.0 134 61.2
CiPaw.15G125300 Carya illinoinensis HOM05D000030 ORTHO05D009563 1.2e-34 150.2 135 61.5
Ciclev10019100m.g Citrus clementina HOM05D000030 ORTHO05D009563 1.2e-34 150.2 134 59.0
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 1.6e-34 149.8 135 57.8
Haze_18591 Corylus avellana HOM05D000030 ORTHO05D009563 2.6e-34 149.1 134 60.4
vmacro17683 Vaccinium macrocarpon HOM05D000030 ORTHO05D009563 3.5e-34 148.7 133 60.2
RhsimUnG0106400 Rhododendron simsii HOM05D000030 ORTHO05D009563 5.9e-34 147.9 133 59.4
Duzib084G1399 Durio zibethinus HOM05D000030 ORTHO05D009563 1.0e-33 147.1 135 59.3
Lj9C432T16 Lonicera japonica HOM05D000030 ORTHO05D009563 1.0e-33 147.1 136 55.9
Thecc.03G027200 Theobroma cacao HOM05D000030 ORTHO05D009563 1.0e-33 147.1 136 60.3
CsaV3_2G007070 Cucumis sativus L. HOM05D000030 ORTHO05D009563 2.2e-33 146.0 135 60.0
Actinidia39804 Actinidia chinensis HOM05D000030 ORTHO05D009563 5.0e-33 144.8 135 56.3
QL10p023146 Quercus lobata HOM05D000030 ORTHO05D009563 5.0e-33 144.8 137 59.1
CANSAT80G1142 Cannabis sativa HOM05D000030 ORTHO05D009563 8.5e-33 144.1 136 61.0
MSTRG.9564 Avicennia marina HOM05D000030 ORTHO05D009563 1.1e-32 143.7 133 57.1
TWI81G0331 Tripterygium wilfordii HOM05D000030 ORTHO05D009563 1.5e-32 143.3 135 59.3
Gohir.A11G007550 Gossypium hirsutum HOM05D000030 ORTHO05D009563 1.9e-32 142.9 137 57.7
TWI15G1164 Tripterygium wilfordii HOM05D000030 ORTHO05D009563 1.9e-32 142.9 135 60.7
Gohir.D11G008433 Gossypium hirsutum HOM05D000030 ORTHO05D009563 3.2e-32 142.1 137 57.7
Gorai.007G008000 Gossypium raimondii HOM05D000030 ORTHO05D009563 3.2e-32 142.1 137 57.7
CiPaw.16G083300 Carya illinoinensis HOM05D000030 ORTHO05D009563 5.5e-32 141.4 134 57.5
Sabra12G0040700 Salix brachista HOM05D000030 ORTHO05D009563 7.2e-32 141.0 134 60.4
VMungo1215G2945 Vigna mungo HOM05D000030 ORTHO05D009563 9.4e-32 140.6 134 57.5
Potri.012G059200 Populus trichocarpa HOM05D000030 ORTHO05D009563 1.2e-31 140.2 134 61.2
Glyma.05G013900 Glycine max HOM05D000030 ORTHO05D009563 2.7e-31 139.0 134 56.7
Manes.05G118100 Manihot esculenta HOM05D000030 ORTHO05D009563 8.0e-31 137.5 127 59.8
Glyma.17G122200 Glycine max HOM05D000030 ORTHO05D009563 1.4e-30 136.7 134 56.0
AL1G31000 Arabidopsis lyrata HOM05D000030 ORTHO05D000031 6.7e-30 134.4 135 57.8
Nn4g23693 Nelumbo nucifera HOM05D000030 ORTHO05D009563 8.8e-30 134.0 136 52.2
Sp1g16510 Schrenkiella parvula HOM05D000030 ORTHO05D009563 8.8e-30 134.0 134 55.2
SGA_v2.0_scaffold168G38477 Striga asiatica HOM05D000030 ORTHO05D009563 1.2e-29 133.7 133 53.4
Aa31LG7G3250 Aethionema arabicum HOM05D000030 ORTHO05D009563 2.0e-29 132.9 134 54.5
Cc04_g07610 Coffea canephora HOM05D000030 ORTHO05D009563 2.0e-29 132.9 134 53.0
Thhalv10006990m.g Eutrema salsugineum HOM05D000030 ORTHO05D009563 2.0e-29 132.9 134 55.2
Nitab4.5_0003716g0090 Nicotiana tabacum HOM05D000030 ORTHO05D009563 2.6e-29 132.5 131 55.0
CARHR019180 Cardamine hirsuta HOM05D000030 ORTHO05D009563 3.3e-29 132.1 134 54.5
AUR62032181 Chenopodium quinoa HOM05D000030 ORTHO05D009563 4.4e-29 131.7 135 51.9
Ca_02531_v3 Cicer arietinum L. HOM05D000030 ORTHO05D009563 4.4e-29 131.7 134 53.7
ECA246G2413 Erigeron canadensis HOM05D000030 ORTHO05D009563 4.4e-29 131.7 135 53.3
Eucgr.B00689 Eucalyptus grandis HOM05D000030 ORTHO05D009563 4.4e-29 131.7 123 56.9
FvH4_5g12801 Fragaria vesca HOM05D000030 ORTHO05D009563 4.4e-29 131.7 140 57.9
MBI16_g23749_MAGBIO Magnolia biondii HOM05D000030 ORTHO05D009563 5.7e-29 131.3 136 52.2
HanXRQChr05g0157751 Helianthus annuus HOM05D000030 ORTHO05D009563 7.5e-29 131.0 134 53.7
Lalb_Chr13g0302391 Lupinus albus HOM05D000030 ORTHO05D009563 7.5e-29 131.0 134 54.5
Migut.D01584 Erythranthe guttata HOM05D000030 ORTHO05D009563 1.3e-28 130.2 132 54.5
Lj4g0007233 Lotus japonicus HOM05D000030 ORTHO05D009563 1.3e-28 130.2 134 53.7
Carub.0001s1819 Capsella rubella HOM05D000030 ORTHO05D009563 2.8e-28 129.0 135 54.1
Psat5g107360 Pisum sativum HOM05D000030 ORTHO05D000031 1.1e-27 127.1 134 50.7
AT1G18560 Arabidopsis thaliana HOM05D000030 ORTHO05D009563 1.8e-27 126.3 136 55.1
AUR62036941 Chenopodium quinoa HOM05D000030 ORTHO05D009563 2.4e-27 125.9 136 50.0
Peaxi162Scf00015g00634 Petunia axillaris HOM05D000030 ORTHO05D009563 2.4e-27 125.9 120 54.2
Hund09994 Selenicereus undatus HOM05D000030 ORTHO05D009563 3.1e-27 125.6 135 49.6
THA.LOC104812116 Tarenaya hassleriana HOM05D000030 ORTHO05D009563 4.1e-27 125.2 134 52.2
PSO063G1480 Papaver somniferum HOM05D000030 ORTHO05D009563 7.0e-27 124.4 134 50.7
Lsat_1_v5_gn_5_24240 Lactuca sativa HOM05D000030 ORTHO05D009563 2.7e-26 122.5 127 52.0
PGR083G1920 Punica granatum HOM05D000030 ORTHO05D009563 2.7e-26 122.5 140 51.4
ATR0598G059 Amborella trichopoda HOM05D000030 ORTHO05D009563 2.9e-25 119.0 133 48.9
Nitab4.5_0000410g0150 Nicotiana tabacum HOM05D000030 ORTHO05D009563 6.5e-25 117.9 106 57.5
BraA10t44668Z Brassica rapa HOM05D000030 ORTHO05D009563 8.5e-25 117.5 129 52.7
Sopen03g038690 Solanum pennellii HOM05D000030 ORTHO05D009563 2.5e-24 115.9 127 52.0
PGSC0003DMG400005619 Solanum tuberosum HOM05D000030 ORTHO05D009563 5.5e-24 114.8 127 52.8
Lj9C216T3 Lonicera japonica HOM05D000030 ORTHO05D000031 7.2e-24 114.4 140 43.6
TPR.G26769 Trifolium pratense HOM05D000030 ORTHO05D009563 9.4e-24 114.0 130 50.0
Aqoxy3G03880 Aquilegia oxysepala HOM05D000030 ORTHO05D009563 1.2e-23 113.6 138 47.1
EL10Ac5g11242 Beta vulgaris HOM05D000030 ORTHO05D009563 1.6e-23 113.2 135 47.4
Solyc03g119830.4 Solanum lycopersicum HOM05D000030 ORTHO05D009563 2.1e-23 112.8 127 51.2
A09p59880 Brassica napus HOM05D000030 ORTHO05D009563 8.0e-23 110.9 137 49.6
BraA09t41360Z Brassica rapa HOM05D000030 ORTHO05D009563 8.0e-23 110.9 137 49.6
C08p43280 Brassica napus HOM05D000030 ORTHO05D009563 1.8e-22 109.8 135 48.9
BolC8t51878H Brassica oleracea HOM05D000030 ORTHO05D009563 1.8e-22 109.8 135 48.9
Cpa.g.sc13.59 Carica papaya HOM05D000030 ORTHO05D009563 1.4e-19 100.1 68 75.0
BolC5t32459H Brassica oleracea HOM05D003212 ORTHO05D017537 4.5e-18 95.1 102 52.0
CDE06G0266 Ceratophyllum demersum HOM05D000030 ORTHO05D009563 2.3e-17 92.8 65 69.2
PSO063G5057 Papaver somniferum HOM05D000030 ORTHO05D009563 1.4e-14 83.6 115 43.5
PSO421G0305 Papaver somniferum HOM05D000030 ORTHO05D009563 3.7e-12 75.5 79 49.4
Os01g0111400 Oryza sativa ssp. japonica HOM05D000030 ORTHO05D009563 1.4e-11 73.6 136 36.0
PSO063G2153 Papaver somniferum HOM05D000030 ORTHO05D009563 5.4e-11 71.6 107 41.1
PSO063G2643 Papaver somniferum HOM05D000030 ORTHO05D009563 5.4e-11 71.6 107 41.1
ATR0564G191 Amborella trichopoda HOM05D000030 ORTHO05D009563 9.2e-11 70.9 104 42.3


User provided reference genes

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