Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1216700 Malus domestica HOM05D003025 ORTHO05D003305 8.9e-193 676.8 348 100.0
MD06G1205800 Malus domestica HOM05D003025 ORTHO05D003305 2.2e-146 522.7 349 80.5
Prupe.5G210100 Prunus persica HOM05D003025 ORTHO05D003305 9.2e-81 304.7 392 50.5
RcHm_v2.0_Chr7g0183741 Rosa chinensis HOM05D003025 ORTHO05D003305 9.6e-46 188.3 360 41.7
FAN13G2721 Fragaria x ananassa HOM05D003025 ORTHO05D003305 4.1e-44 183.0 477 34.4
FAN18G0971 Fragaria x ananassa HOM05D003025 ORTHO05D003305 3.1e-36 156.8 460 33.5
FvH4_5g13400 Fragaria vesca HOM05D003025 ORTHO05D003305 9.0e-36 155.2 460 33.5
Dinv38641 Davidia involucrata HOM05D003025 ORTHO05D003305 1.3e-34 151.4 443 32.3
QL10p020762 Quercus lobata HOM05D011573 ORTHO05D003305 7.4e-30 135.6 388 33.0
Potri.015G048400 Populus trichocarpa HOM05D003025 ORTHO05D003305 4.5e-27 126.3 380 32.6
Sabra15G0078800 Salix brachista HOM05D003025 ORTHO05D003305 7.9e-24 115.5 383 32.9
Ciclev10021731m.g Citrus clementina HOM05D003025 ORTHO05D003305 4.4e-22 109.8 273 34.8
CANSAT80G0192 Cannabis sativa HOM05D003025 ORTHO05D003305 1.8e-20 104.4 406 28.6
ClCG06G015430 Citrullus lanatus HOM05D025218 ORTHO05D025068 1.7e-18 97.8 306 31.0
TAR374G0527 Trochodendron aralioides HOM05D003025 ORTHO05D003305 8.5e-18 95.5 336 31.2
Hma1.2p1_0428F.1_g150820 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 2.5e-17 94.0 145 42.1
Duzib205G1035 Durio zibethinus HOM05D003025 ORTHO05D003305 9.4e-17 92.0 303 31.7
GSVIVG01008155001 Vitis vinifera HOM05D003025 ORTHO05D003305 1.2e-16 91.7 350 29.7
Lj6A773T133 Lonicera japonica HOM05D003025 ORTHO05D003305 1.6e-16 91.3 99 53.5
Gohir.A03G106600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.1e-16 90.9 157 38.2
Dinv15582 Davidia involucrata HOM05D003025 ORTHO05D003305 6.1e-16 89.4 111 50.5
Gohir.D02G131800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 6.1e-16 89.4 188 36.2
Gohir.A13G088100 Gossypium hirsutum HOM05D003025 ORTHO05D003305 8.0e-16 89.0 81 59.3
Gorai.005G147700 Gossypium raimondii HOM05D003025 ORTHO05D003305 8.0e-16 89.0 188 36.2
Gohir.D13G085500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.4e-15 88.2 81 59.3
Gorai.013G097400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.4e-15 88.2 81 59.3
vmacro10474 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 1.8e-15 87.8 153 45.1
Potri.010G138100 Populus trichocarpa HOM05D003025 ORTHO05D003305 3.0e-15 87.0 136 41.2
Actinidia19904 Actinidia chinensis HOM05D003025 ORTHO05D003305 4.0e-15 86.7 305 29.2
Glyma.02G122700 Glycine max HOM05D003025 ORTHO05D003305 4.0e-15 86.7 84 57.1
Nn4g23540 Nelumbo nucifera HOM05D003025 ORTHO05D003305 4.0e-15 86.7 220 35.0
Lj2g0017874 Lotus japonicus HOM05D003025 ORTHO05D003305 5.2e-15 86.3 84 57.1
Manes.14G090300 Manihot esculenta HOM05D003025 ORTHO05D003305 6.7e-15 85.9 81 56.8
CSS0010260 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 1.2e-14 85.1 154 43.5
CANSAT64G2528 Cannabis sativa HOM05D003025 ORTHO05D003305 1.2e-14 85.1 84 53.6
CiPaw.06G095000 Carya illinoinensis HOM05D003025 ORTHO05D003305 1.5e-14 84.7 149 38.9
Duzib248G1661 Durio zibethinus HOM05D003025 ORTHO05D003305 1.5e-14 84.7 99 50.5
Lsat_1_v5_gn_8_37061 Lactuca sativa HOM05D003025 ORTHO05D003305 1.5e-14 84.7 86 54.7
Rhsim09G0122100 Rhododendron simsii HOM05D003025 ORTHO05D003305 1.5e-14 84.7 154 42.2
Thecc.02G322700 Theobroma cacao HOM05D003025 ORTHO05D003305 1.5e-14 84.7 81 56.8
PSO017G6048 Papaver somniferum HOM05D003025 ORTHO05D003305 2.0e-14 84.3 327 29.7
Duzib251G0179 Durio zibethinus HOM05D003025 ORTHO05D003305 2.6e-14 84.0 152 36.8
Phvul.003G038300 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 2.6e-14 84.0 85 58.8
GSVIVG01010102001 Vitis vinifera HOM05D003025 ORTHO05D003305 2.6e-14 84.0 307 29.0
CiPaw.16G080200 Carya illinoinensis HOM05D003025 ORTHO05D003305 3.3e-14 83.6 255 31.4
TWI31G1177 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 3.3e-14 83.6 242 31.0
VMungo1215G0401 Vigna mungo HOM05D003025 ORTHO05D003305 3.3e-14 83.6 85 58.8
MSTRG.781 Avicennia marina HOM05D003025 ORTHO05D003305 4.4e-14 83.2 82 53.7
Gohir.A12G159500 Gossypium hirsutum HOM05D003025 ORTHO05D003305 4.4e-14 83.2 101 49.5
Dinv34020 Davidia involucrata HOM05D003025 ORTHO05D003305 5.7e-14 82.8 131 42.7
Duzib084G0521 Durio zibethinus HOM05D003025 ORTHO05D003305 5.7e-14 82.8 272 33.5
COL.COLO4_27800 Corchorus olitorius HOM05D003025 ORTHO05D003305 7.5e-14 82.4 160 35.6
HanXRQChr08g0215591 Helianthus annuus HOM05D003025 ORTHO05D003305 7.5e-14 82.4 101 50.5
MBI15_g31908_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 9.7e-14 82.0 219 35.6
Sabra08G0084400 Salix brachista HOM05D003025 ORTHO05D003305 9.7e-14 82.0 161 37.9
THA.LOC104824052 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 9.7e-14 82.0 81 53.1
Actinidia07767 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.3e-13 81.6 251 27.1
Actinidia31928 Actinidia chinensis HOM05D003025 ORTHO05D003305 1.3e-13 81.6 206 36.4
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 1.7e-13 81.3 89 50.6
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 1.7e-13 81.3 158 36.7
Cc11_g11550 Coffea canephora HOM05D003025 ORTHO05D003305 1.7e-13 81.3 100 48.0
CsaV3_6G033910 Cucumis sativus L. HOM05D003025 ORTHO05D003305 1.7e-13 81.3 102 50.0
Glyma.01G064900 Glycine max HOM05D003025 ORTHO05D003305 1.7e-13 81.3 97 52.6
Gohir.D12G162800 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.7e-13 81.3 101 49.5
Gorai.008G175400 Gossypium raimondii HOM05D003025 ORTHO05D003305 1.7e-13 81.3 101 49.5
Lalb_Chr10g0099151 Lupinus albus HOM05D003025 ORTHO05D003305 1.7e-13 81.3 105 47.6
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 2.2e-13 80.9 158 36.1
Potri.008G111800 Populus trichocarpa HOM05D003025 ORTHO05D003305 2.8e-13 80.5 165 39.4
Sed0026748 Sechium edule HOM05D025218 ORTHO05D025068 2.8e-13 80.5 317 27.4
CiPaw.05G121600 Carya illinoinensis HOM05D003025 ORTHO05D003305 3.7e-13 80.1 138 41.3
Eucgr.G02421 Eucalyptus grandis HOM05D003025 ORTHO05D003305 3.7e-13 80.1 140 42.9
HanXRQChr17g0568661 Helianthus annuus HOM05D003025 ORTHO05D003305 3.7e-13 80.1 81 51.9
Manes.06G079500 Manihot esculenta HOM05D003025 ORTHO05D003305 3.7e-13 80.1 81 54.3
MD13G1056500 Malus domestica HOM05D003025 ORTHO05D003305 4.8e-13 79.7 139 44.6
PGR102G2660 Punica granatum HOM05D003025 ORTHO05D003305 4.8e-13 79.7 160 40.6
THA.LOC104805213 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 6.3e-13 79.3 81 51.9
Lj1g0004148 Lotus japonicus HOM05D011573 ORTHO05D014451 8.2e-13 79.0 279 31.5
Prupe.1G293500 Prunus persica HOM05D003025 ORTHO05D003305 1.8e-12 77.8 83 55.4
arahy.Tifrunner.gnm1.ann1.161SS5 Arachis hypogaea HOM05D003025 ORTHO05D003305 2.4e-12 77.4 200 32.5
MELO3C011401.2 Cucumis melo HOM05D003025 ORTHO05D003305 2.4e-12 77.4 102 48.0
PSO478G4016 Papaver somniferum HOM05D003025 ORTHO05D003305 2.4e-12 77.4 321 29.3
Nitab4.5_0001071g0040 Nicotiana tabacum HOM05D003025 ORTHO05D003305 3.1e-12 77.0 102 46.1
ClCG05G023550 Citrullus lanatus HOM05D003025 ORTHO05D003305 4.1e-12 76.6 106 49.1
Glyma.04G158900 Glycine max HOM05D011573 ORTHO05D014451 4.1e-12 76.6 272 27.9
HPP92_015551 Vanilla planifolia HOM05D003025 ORTHO05D003305 5.3e-12 76.3 139 41.0
MSTRG.7727 Avicennia marina HOM05D003025 ORTHO05D003305 7.0e-12 75.9 221 28.5
Glyma.06G206200 Glycine max HOM05D011573 ORTHO05D014451 1.2e-11 75.1 274 28.5
HanXRQChr16g0528681 Helianthus annuus HOM05D003025 ORTHO05D003305 1.2e-11 75.1 81 51.9
MD16G1055400 Malus domestica HOM05D003025 ORTHO05D003305 1.2e-11 75.1 82 56.1
Sed0001557 Sechium edule HOM05D003025 ORTHO05D003305 1.2e-11 75.1 81 51.9
Gohir.A07G058700 Gossypium hirsutum HOM05D003025 ORTHO05D003305 1.6e-11 74.7 257 30.7
Hma1.2p1_0060F.1_g032730 Hydrangea macrophylla HOM05D003025 ORTHO05D003305 1.6e-11 74.7 119 41.2
TPR.G38556 Trifolium pratense HOM05D003025 ORTHO05D003305 1.6e-11 74.7 92 50.0
Gorai.001G067100 Gossypium raimondii HOM05D003025 ORTHO05D003305 2.0e-11 74.3 80 52.5
Sabra10G0106400 Salix brachista HOM05D003025 ORTHO05D003305 3.5e-11 73.6 101 43.6
SGA_v2.0_scaffold16G07826 Striga asiatica HOM05D003025 ORTHO05D003305 3.5e-11 73.6 80 47.5
Thecc.03G108500 Theobroma cacao HOM05D003025 ORTHO05D003305 3.5e-11 73.6 298 29.9
TPR.G14359 Trifolium pratense HOM05D011573 ORTHO05D014451 3.5e-11 73.6 267 31.1
Medtr2g461480 Medicago truncatula HOM05D011573 ORTHO05D014451 4.5e-11 73.2 272 29.8
TAR622G0187 Trochodendron aralioides HOM05D003025 ORTHO05D003305 5.9e-11 72.8 238 31.5
Sc04g0007330 Simmondsia chinensis HOM05D003025 ORTHO05D003305 7.7e-11 72.4 161 30.4
PSO063G1603 Papaver somniferum HOM05D003025 ORTHO05D003305 1.0e-10 72.0 236 30.5
unitig_62.g23701 Utricularia gibba HOM05D003025 ORTHO05D003305 1.3e-10 71.6 81 53.1
Ca_05068_v3 Cicer arietinum L. HOM05D003025 ORTHO05D003305 2.2e-10 70.9 258 29.8
Gohir.D07G063600 Gossypium hirsutum HOM05D003025 ORTHO05D003305 2.2e-10 70.9 79 51.9
Oeu024157.1 Olea europaea HOM05D003025 ORTHO05D003305 2.2e-10 70.9 110 40.9
THA.LOC104801838 Tarenaya hassleriana HOM05D003025 ORTHO05D003305 2.2e-10 70.9 79 48.1
Phvul.009G203900 Phaseolus vulgaris HOM05D011573 ORTHO05D014451 2.9e-10 70.5 288 28.8
TWI79G0747 Tripterygium wilfordii HOM05D003025 ORTHO05D003305 2.9e-10 70.5 110 41.8
vmacro01298 Vaccinium macrocarpon HOM05D003025 ORTHO05D003305 2.9e-10 70.5 82 51.2
Lj3A1027T87 Lonicera japonica HOM05D003025 ORTHO05D003305 3.8e-10 70.1 103 42.7
Oeu062245.1 Olea europaea HOM05D003025 ORTHO05D003305 3.8e-10 70.1 110 40.9
Sopen05g006590 Solanum pennellii HOM05D003025 ORTHO05D003305 3.8e-10 70.1 82 47.6
BcaC04g21446 Brassica carinata HOM05D003025 ORTHO05D003305 5.0e-10 69.7 82 51.2
C09p31660 Brassica napus HOM05D003025 ORTHO05D003305 5.0e-10 69.7 82 51.2
BolC9t56021H Brassica oleracea HOM05D003025 ORTHO05D003305 5.0e-10 69.7 82 51.2
Lalb_Chr04g0255461 Lupinus albus HOM05D003025 ORTHO05D003305 5.0e-10 69.7 237 30.4
Os04g0467100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 5.0e-10 69.7 80 48.8
Sopen04g001270 Solanum pennellii HOM05D003025 ORTHO05D003305 5.0e-10 69.7 301 28.9
HPP92_018243 Vanilla planifolia HOM05D003025 ORTHO05D003305 5.0e-10 69.7 57 59.6
C02p51790 Brassica napus HOM05D003025 ORTHO05D003305 6.5e-10 69.3 260 27.3
PSO782G5508 Papaver somniferum HOM05D003025 ORTHO05D003305 6.5e-10 69.3 186 32.8
VMungo0251G3127 Vigna mungo HOM05D003025 ORTHO05D003305 6.5e-10 69.3 382 27.0
ClCG08G010610 Citrullus lanatus HOM05D003025 ORTHO05D003305 8.5e-10 68.9 346 30.1
arahy.Tifrunner.gnm1.ann1.8UFH9N Arachis hypogaea HOM05D003025 ORTHO05D003305 1.1e-09 68.6 199 31.7
CDE10G0152 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 1.1e-09 68.6 77 48.1
PGSC0003DMG400001936 Solanum tuberosum HOM05D003025 ORTHO05D003305 1.1e-09 68.6 200 32.0
Peaxi162Scf00188g01025 Petunia axillaris HOM05D003025 ORTHO05D003305 1.5e-09 68.2 210 31.4
Sed0017206 Sechium edule HOM05D003025 ORTHO05D003305 1.5e-09 68.2 85 51.8
A06p42840 Brassica napus HOM05D003025 ORTHO05D003305 1.9e-09 67.8 81 48.1
BraA06t27196Z Brassica rapa HOM05D003025 ORTHO05D003305 1.9e-09 67.8 81 48.1
Solyc04g005290.3 Solanum lycopersicum HOM05D003025 ORTHO05D003305 2.5e-09 67.4 252 29.0
SEGI_24332 Sequoiadendron giganteum HOM05D066507 ORTHO05D003305 5.5e-09 66.2 66 56.1
VMungo1309G0453 Vigna mungo HOM05D011573 ORTHO05D014451 7.2e-09 65.9 275 29.1
Aa31LG2G6910 Aethionema arabicum HOM05D003025 ORTHO05D003305 9.4e-09 65.5 82 47.6
CsaV3_5G033470 Cucumis sativus L. HOM05D003025 ORTHO05D003305 9.4e-09 65.5 237 30.8
SGA_v2.0_scaffold59G20657 Striga asiatica HOM05D003025 ORTHO05D003305 9.4e-09 65.5 63 55.6
unitig_22.g5562 Utricularia gibba HOM05D003025 ORTHO05D003305 9.4e-09 65.5 81 48.1
BcaC06g31142 Brassica carinata HOM05D003025 ORTHO05D003305 1.2e-08 65.1 314 27.1
MBI14_g31150_MAGBIO Magnolia biondii HOM05D003025 ORTHO05D003305 1.2e-08 65.1 209 30.6
Medtr5g047930 Medicago truncatula HOM05D003025 ORTHO05D003305 1.6e-08 64.7 241 28.6
HanXRQChr12g0365071 Helianthus annuus HOM05D003025 ORTHO05D003305 2.1e-08 64.3 288 28.1
Manes.14G089200 Manihot esculenta HOM05D041365 ORTHO05D034088 2.1e-08 64.3 386 25.9
Psat2g085960 Pisum sativum HOM05D003025 ORTHO05D003305 2.1e-08 64.3 210 30.5
Rhsim12G0071300 Rhododendron simsii HOM05D003025 ORTHO05D003305 2.7e-08 63.9 303 26.7
DCAR_030058 Daucus carota HOM05D003025 ORTHO05D003305 3.6e-08 63.5 214 32.2
Os02g0582100 Oryza sativa ssp. japonica HOM05D003025 ORTHO05D003305 3.6e-08 63.5 57 56.1
BolC7t43953H Brassica oleracea HOM05D003025 ORTHO05D003305 6.1e-08 62.8 322 25.5
Phvul.003G280500 Phaseolus vulgaris HOM05D003025 ORTHO05D003305 6.1e-08 62.8 57 54.4
PGSC0003DMG404024620 Solanum tuberosum HOM05D017485 ORTHO05D020287 6.1e-08 62.8 274 26.3
Oeu003749.3 Olea europaea HOM05D003025 ORTHO05D003305 8.0e-08 62.4 109 40.4
CDE10G0686 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 1.0e-07 62.0 75 48.0
Migut.L01161 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.0e-07 62.0 196 29.1
FAN07G1412 Fragaria x ananassa HOM05D003025 ORTHO05D003305 1.0e-07 62.0 58 56.9
Lsat_1_v5_gn_3_105000 Lactuca sativa HOM05D003025 ORTHO05D003305 1.0e-07 62.0 87 47.1
Hund09959 Selenicereus undatus HOM05D003025 ORTHO05D003305 1.4e-07 61.6 252 27.4
Carub.0001s1338 Capsella rubella HOM05D003025 ORTHO05D003305 1.8e-07 61.2 275 29.5
Migut.E00253 Erythranthe guttata HOM05D003025 ORTHO05D003305 1.8e-07 61.2 82 45.1
Thhalv10004181m.g Eutrema salsugineum HOM05D003025 ORTHO05D003305 1.8e-07 61.2 113 44.2
Aqoxy3G03750 Aquilegia oxysepala HOM05D003025 ORTHO05D003305 2.3e-07 60.8 211 28.4
CSS0010060 Camellia sinensis var. sinensis HOM05D003025 ORTHO05D003305 2.3e-07 60.8 91 42.9
Cc04_g08270 Coffea canephora HOM05D003025 ORTHO05D003305 3.0e-07 60.5 91 46.2
Sp2g14630 Schrenkiella parvula HOM05D003025 ORTHO05D003305 3.0e-07 60.5 82 48.8
Sed0005774 Sechium edule HOM05D025218 ORTHO05D025068 5.2e-07 59.7 274 31.4
Solyc03g114750.3 Solanum lycopersicum HOM05D017485 ORTHO05D020287 5.2e-07 59.7 287 27.2
unitig_52.g17161 Utricularia gibba HOM05D003025 ORTHO05D003305 5.2e-07 59.7 192 32.3
Zm00001eb080280 Zea mays HOM05D041475 ORTHO05D003305 5.2e-07 59.7 211 28.0
Zm00001eb245390 Zea mays HOM05D003025 ORTHO05D003305 5.2e-07 59.7 53 54.7
PGSC0003DMG400025716 Solanum tuberosum HOM05D003025 ORTHO05D003305 6.8e-07 59.3 218 27.1
BcaB07g30644 Brassica carinata HOM05D003025 ORTHO05D003305 8.8e-07 58.9 293 27.6
Lalb_Chr17g0341461 Lupinus albus HOM05D003025 ORTHO05D003305 8.8e-07 58.9 330 25.2
Sed0016639 Sechium edule HOM05D003025 ORTHO05D003305 8.8e-07 58.9 246 29.7
AT2G03810 Arabidopsis thaliana HOM05D003025 ORTHO05D003305 1.2e-06 58.5 113 39.8
Psat1g126360 Pisum sativum HOM05D011573 ORTHO05D014451 2.0e-06 57.8 353 24.6
Sc11g0002650 Simmondsia chinensis HOM05D003025 ORTHO05D003305 2.0e-06 57.8 146 32.9
EL10Ac6g14672 Beta vulgaris HOM05D003025 ORTHO05D003305 2.6e-06 57.4 231 27.3
arahy.Tifrunner.gnm1.ann1.0U0Y1K Arachis hypogaea HOM05D011573 ORTHO05D014451 4.4e-06 56.6 280 28.6
CDE02G2647 Ceratophyllum demersum HOM05D003025 ORTHO05D003305 4.4e-06 56.6 84 51.2
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 4.4e-06 56.6 64 48.4
unitig_8.g3969 Utricularia gibba HOM05D003025 ORTHO05D003305 4.4e-06 56.6 81 43.2
Oeu021806.1 Olea europaea HOM05D003025 ORTHO05D003305 5.7e-06 56.2 219 29.7
BcaB02g06463 Brassica carinata HOM05D003025 ORTHO05D003305 7.5e-06 55.8 275 26.5
HanXRQChr15g0475601 Helianthus annuus HOM05D003025 ORTHO05D003305 7.5e-06 55.8 123 36.6
FvH4_4g29290 Fragaria vesca HOM05D003025 ORTHO05D003305 9.8e-06 55.5 58 53.4
FAN17G1716 Fragaria x ananassa HOM05D003025 ORTHO05D003305 9.8e-06 55.5 58 53.4
FAN22G0063 Fragaria x ananassa HOM05D003025 ORTHO05D003305 9.8e-06 55.5 58 53.4
SGA_v2.0_scaffold287G47189 Striga asiatica HOM05D003025 ORTHO05D003305 9.8e-06 55.5 268 27.2


User provided reference genes

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