Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1216500 Malus domestica HOM05D007687 ORTHO05D009692 2.6e-194 681.8 328 100.0
Prupe.5G209900 Prunus persica HOM05D007687 ORTHO05D009692 1.4e-83 313.9 326 54.9
QL10p020735 Quercus lobata HOM05D007687 ORTHO05D009692 3.4e-69 266.2 329 48.6
Sed0010577 Sechium edule HOM05D007687 ORTHO05D009692 3.3e-64 249.6 336 45.8
Thecc.03G108300 Theobroma cacao HOM05D007687 ORTHO05D009692 2.0e-53 213.8 328 42.1
Duzib084G0111 Durio zibethinus HOM05D007687 ORTHO05D009692 1.8e-49 200.7 330 40.0
Duzib068G1012 Durio zibethinus HOM05D007687 ORTHO05D009692 6.7e-49 198.7 332 40.7
FAN08G0723 Fragaria x ananassa HOM05D007687 ORTHO05D009692 3.3e-48 196.4 351 40.2
FvH4_5g13402 Fragaria vesca HOM05D007687 ORTHO05D009692 4.4e-48 196.1 354 40.4
FAN18G0959 Fragaria x ananassa HOM05D007687 ORTHO05D009692 4.4e-48 196.1 354 40.4
Potri.015G048600 Populus trichocarpa HOM05D007687 ORTHO05D009692 2.8e-47 193.4 339 42.8
Duzib205G1319 Durio zibethinus HOM05D007687 ORTHO05D009692 3.1e-46 189.9 325 40.6
COL.COLO4_27494 Corchorus olitorius HOM05D000180 ORTHO05D009692 4.7e-42 176.0 345 40.3
Manes.14G089000 Manihot esculenta HOM05D007687 ORTHO05D009692 1.7e-39 167.5 338 35.8
TAR629G0229 Trochodendron aralioides HOM05D007687 ORTHO05D009692 2.8e-39 166.8 336 37.5
CiPaw.15G114100 Carya illinoinensis HOM05D007687 ORTHO05D009692 4.1e-38 162.9 298 41.9
CAN.G982.38 Capsicum annuum HOM05D007687 ORTHO05D009692 2.2e-36 157.1 348 35.1
Sabra15G0078700 Salix brachista HOM05D007687 ORTHO05D009692 4.7e-34 149.4 336 36.3
Oeu044771.1 Olea europaea HOM05D007687 ORTHO05D009692 6.8e-33 145.6 327 33.6
Nitab4.5_0002467g0050 Nicotiana tabacum HOM05D007687 ORTHO05D009692 8.8e-33 145.2 340 34.4
FAN13G2354 Fragaria x ananassa HOM05D007687 ORTHO05D009692 7.5e-32 142.1 201 47.8
Peaxi162Scf00017g03282 Petunia axillaris HOM05D007687 ORTHO05D009692 1.1e-30 138.3 340 32.6
Nn4g23535 Nelumbo nucifera HOM05D007687 ORTHO05D009692 4.1e-30 136.3 339 33.9
Actinidia10442 Actinidia chinensis HOM05D007687 ORTHO05D009692 2.7e-29 133.7 330 35.2
TWI60G1328 Tripterygium wilfordii HOM05D007687 ORTHO05D009692 2.9e-28 130.2 289 31.8
ClCG04G011570 Citrullus lanatus HOM05D007687 ORTHO05D009692 5.5e-27 125.9 313 34.8
Dinv07975 Davidia involucrata HOM05D007687 ORTHO05D009692 5.5e-27 125.9 188 38.8
Atru.chr4.1593 Acer truncatum HOM05D007687 ORTHO05D009692 7.2e-27 125.6 287 34.1
AL8G37500 Arabidopsis lyrata HOM05D007687 ORTHO05D009692 9.5e-27 125.2 330 32.4
Ciclev10024235m.g Citrus clementina HOM05D007687 ORTHO05D009692 4.7e-26 122.9 327 31.8
AT5G60880 Arabidopsis thaliana HOM05D007687 ORTHO05D009692 1.8e-25 120.9 330 31.5
Solyc03g114770.3 Solanum lycopersicum HOM05D007687 ORTHO05D009692 2.3e-25 120.6 346 29.2
Sp2g24190 Schrenkiella parvula HOM05D007687 ORTHO05D009692 5.7e-24 115.9 336 31.0
Dinv17458 Davidia involucrata HOM05D007687 ORTHO05D009692 1.3e-23 114.8 167 44.9
Thhalv10004801m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 1.3e-23 114.8 336 30.7
Sopen03g033850 Solanum pennellii HOM05D007687 ORTHO05D009692 1.3e-23 114.8 347 29.1
BcaNung02611 Brassica carinata HOM05D007687 ORTHO05D009692 6.3e-23 112.5 336 30.4
C07p44640 Brassica napus HOM05D007687 ORTHO05D009692 6.3e-23 112.5 336 30.4
BolC7t44987H Brassica oleracea HOM05D007687 ORTHO05D009692 6.3e-23 112.5 336 30.7
Cc04_g08290 Coffea canephora HOM05D007687 ORTHO05D009692 8.3e-23 112.1 322 31.7
Nitab4.5_0005994g0030 Nicotiana tabacum HOM05D007687 ORTHO05D009692 2.4e-22 110.5 338 29.6
Gohir.A09G243800 Gossypium hirsutum HOM05D007687 ORTHO05D009692 9.2e-22 108.6 321 31.8
CsaV3_1G006250 Cucumis sativus L. HOM05D007687 ORTHO05D009692 1.2e-21 108.2 272 33.5
BraA03t13781Z Brassica rapa HOM05D007687 ORTHO05D009692 1.6e-21 107.8 336 30.7
BcaC06g33202 Brassica carinata HOM05D007687 ORTHO05D009692 4.5e-21 106.3 336 31.0
VMungo1215G2041 Vigna mungo HOM05D007687 ORTHO05D009692 2.3e-20 104.0 312 31.1
Gorai.006G268500 Gossypium raimondii HOM05D007687 ORTHO05D009692 5.0e-20 102.8 321 32.1
CARHR274560 Cardamine hirsuta HOM05D007687 ORTHO05D009692 6.6e-20 102.4 329 28.3
Cfa016835 Carpinus fangiana HOM05D007687 ORTHO05D009692 1.9e-19 100.9 255 32.5
A03p46570 Brassica napus HOM05D007687 ORTHO05D009692 2.5e-19 100.5 336 30.1
Lj5A137T61 Lonicera japonica HOM05D007687 ORTHO05D009692 9.5e-19 98.6 185 36.2
Lj4g0013896 Lotus japonicus HOM05D007687 ORTHO05D009692 9.5e-19 98.6 323 28.8
BcaB04g19894 Brassica carinata HOM05D007687 ORTHO05D009692 2.8e-18 97.1 327 27.8
BcaC04g23476 Brassica carinata HOM05D007687 ORTHO05D009692 6.1e-18 95.9 327 28.4
BolC9t53708H Brassica oleracea HOM05D007687 ORTHO05D009692 1.0e-17 95.1 327 28.4
Carub.0008s2158 Capsella rubella HOM05D007687 ORTHO05D009692 6.8e-17 92.4 335 27.8
Rhsim01G0212900 Rhododendron simsii HOM05D006174 ORTHO05D007987 6.8e-17 92.4 302 29.1
C09p07960 Brassica napus HOM05D007687 ORTHO05D009692 1.2e-16 91.7 327 27.5
BraA09t36360Z Brassica rapa HOM05D007687 ORTHO05D009692 2.0e-16 90.9 327 28.1
THA.LOC104801051 Tarenaya hassleriana HOM05D007687 ORTHO05D009692 4.4e-16 89.7 346 27.2
Gorai.006G268600 Gossypium raimondii HOM05D007687 ORTHO05D009692 5.7e-16 89.4 340 27.6
Gohir.D09G244550 Gossypium hirsutum HOM05D007687 ORTHO05D009692 9.8e-16 88.6 342 28.1
Phvul.003G182300 Phaseolus vulgaris HOM05D007687 ORTHO05D009692 1.3e-15 88.2 287 32.1
Thhalv10015806m.g Eutrema salsugineum HOM05D007687 ORTHO05D009692 2.2e-15 87.4 327 28.1
A09p07100 Brassica napus HOM05D007687 ORTHO05D009692 3.7e-15 86.7 328 27.7
Glyma.17G081600 Glycine max HOM05D007687 ORTHO05D009692 8.3e-15 85.5 57 70.2
Medtr2g461550 Medicago truncatula HOM05D007687 ORTHO05D009692 8.3e-15 85.5 283 30.0
CANSAT56G0292 Cannabis sativa HOM05D007687 ORTHO05D009692 2.4e-14 84.0 233 31.8
Cpa.g.sc3.233 Carica papaya HOM05D007687 ORTHO05D009692 3.2e-14 83.6 263 33.5
CANSAT56G1485 Cannabis sativa HOM05D007687 ORTHO05D009692 4.1e-14 83.2 233 31.8
Manes.06G080900 Manihot esculenta HOM05D007687 ORTHO05D009692 4.6e-13 79.7 272 28.7
PGSC0003DMG400024621 Solanum tuberosum HOM05D007687 ORTHO05D009692 2.3e-12 77.4 299 27.8
Haze_19876 Corylus avellana HOM05D007687 ORTHO05D009692 6.6e-12 75.9 226 32.7
Gohir.D09G244500 Gossypium hirsutum HOM05D007687 ORTHO05D009692 6.6e-12 75.9 170 35.3
Actinidia04796 Actinidia chinensis HOM05D007687 ORTHO05D009692 2.5e-11 73.9 132 39.4
PSO063G2070 Papaver somniferum HOM05D035011 ORTHO05D031291 7.3e-11 72.4 251 29.1
Aa31LG11G2410 Aethionema arabicum HOM05D007687 ORTHO05D009692 2.8e-10 70.5 59 57.6
Ca_21756_v3 Cicer arietinum L. HOM05D007687 ORTHO05D009692 1.8e-09 67.8 68 52.9
MELO3C002053.2 Cucumis melo HOM05D007687 ORTHO05D009692 3.1e-09 67.0 115 43.5
Glyma.05G018400 Glycine max HOM05D007687 ORTHO05D009692 1.5e-08 64.7 40 72.5
PSO782G3609 Papaver somniferum HOM05D035011 ORTHO05D031291 2.6e-08 63.9 254 29.5
Ah.11g047410 Amaranthus hybridus HOM05D024623 ORTHO05D023410 1.7e-07 61.2 308 23.4
SGA_v2.0_scaffold105G30431 Striga asiatica HOM05D007687 ORTHO05D009692 4.9e-07 59.7 325 25.2
AUR62003057 Chenopodium quinoa HOM05D003025 ORTHO05D003305 4.1e-06 56.6 82 45.1
AUR62007872 Chenopodium quinoa HOM05D003025 ORTHO05D003305 5.4e-06 56.2 82 45.1
PGR031G0897 Punica granatum HOM05D007687 ORTHO05D009692 5.4e-06 56.2 281 26.3
Ah.03g138600 Amaranthus hybridus HOM05D003025 ORTHO05D003305 7.0e-06 55.8 82 42.7
Medtr4g109950 Medicago truncatula HOM05D007687 ORTHO05D009692 7.0e-06 55.8 228 25.9


User provided reference genes

Program Settings