Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1211300 Malus domestica HOM05D007909 ORTHO05D000743 4.5e-91 337.8 160 100.0
MD06G1202200 Malus domestica HOM05D007909 ORTHO05D000743 3.9e-58 228.4 126 85.7
Prupe.5G204200 Prunus persica HOM05D007909 ORTHO05D000743 6.8e-47 191.0 126 70.6
FvH4_4g13540 Fragaria vesca HOM05D007909 ORTHO05D000743 9.6e-33 144.1 119 58.8
FAN17G0179 Fragaria x ananassa HOM05D000009 ORTHO05D000008 9.6e-33 144.1 119 58.8
RcHm_v2.0_Chr7g0183021 Rosa chinensis HOM05D007909 ORTHO05D000743 8.4e-29 131.0 119 53.8
CiPaw.12G008400 Carya illinoinensis HOM05D007909 ORTHO05D000743 1.9e-28 129.8 124 53.2
Potri.014G040100 Populus trichocarpa HOM05D007909 ORTHO05D000743 1.9e-28 129.8 122 49.2
Sabra14G0029200 Salix brachista HOM05D007909 ORTHO05D000743 2.4e-28 129.4 135 46.7
Haze_07714 Corylus avellana HOM05D007909 ORTHO05D000743 9.3e-28 127.5 122 52.5
QL12p030770 Quercus lobata HOM05D007909 ORTHO05D000743 1.8e-26 123.2 125 48.0
FAN08G2750 Fragaria x ananassa HOM05D007909 ORTHO05D000743 2.3e-26 122.9 122 50.8
FvH4_5g13930 Fragaria vesca HOM05D007909 ORTHO05D000743 3.0e-26 122.5 122 50.8
FAN18G3687 Fragaria x ananassa HOM05D007909 ORTHO05D000743 3.0e-26 122.5 122 50.8
QL03p074255 Quercus lobata HOM05D007909 ORTHO05D000743 6.7e-26 121.3 125 47.2
Haze_07687 Corylus avellana HOM05D007909 ORTHO05D000743 8.7e-26 120.9 124 50.0
QL03p074129 Quercus lobata HOM05D007909 ORTHO05D000743 1.6e-24 116.7 122 47.5
Cfa019304 Carpinus fangiana HOM05D001093 ORTHO05D000743 2.1e-24 116.3 126 49.2
QL03p074381 Quercus lobata HOM05D007909 ORTHO05D000743 2.1e-24 116.3 122 47.5
Cfa019324 Carpinus fangiana HOM05D007909 ORTHO05D000743 2.8e-24 115.9 122 48.4
QL03p074219 Quercus lobata HOM05D007909 ORTHO05D000743 8.1e-24 114.4 122 47.5
FvH4_5g13940 Fragaria vesca HOM05D008195 ORTHO05D000743 1.8e-23 113.2 126 49.2
FAN18G3856 Fragaria x ananassa HOM05D008195 ORTHO05D000743 1.8e-23 113.2 126 49.2
Manes.06G085200 Manihot esculenta HOM05D007909 ORTHO05D010605 2.4e-23 112.8 123 44.7
TWI60G0473 Tripterygium wilfordii HOM05D007909 ORTHO05D000743 4.0e-23 112.1 126 44.4
CANSAT80G0598 Cannabis sativa HOM05D007909 ORTHO05D000743 5.3e-23 111.7 122 46.7
Atru.chr9.429 Acer truncatum HOM05D007909 ORTHO05D000743 6.9e-23 111.3 115 47.0
Duzib205G1796 Durio zibethinus HOM05D001093 ORTHO05D010605 1.2e-22 110.5 115 46.1
Duzib205G0904 Durio zibethinus HOM05D007909 ORTHO05D000743 1.5e-22 110.2 121 47.9
Sed0028074 Sechium edule HOM05D007909 ORTHO05D000743 1.5e-22 110.2 123 40.7
Duzib084G0387 Durio zibethinus HOM05D001093 ORTHO05D000743 2.0e-22 109.8 115 47.8
Thecc.03G101000 Theobroma cacao HOM05D007909 ORTHO05D000743 2.0e-22 109.8 119 47.1
Ca_26164_v3 Cicer arietinum L. HOM05D001093 ORTHO05D000743 2.6e-22 109.4 126 46.8
FAN08G3156 Fragaria x ananassa HOM05D008195 ORTHO05D000743 2.6e-22 109.4 126 48.4
Glyma.06G203100 Glycine max HOM05D007909 ORTHO05D000743 3.4e-22 109.0 123 46.3
CANSAT80G0086 Cannabis sativa HOM05D007909 ORTHO05D000743 4.5e-22 108.6 123 45.5
Dinv17406 Davidia involucrata HOM05D001093 ORTHO05D000743 5.5e-20 101.7 123 47.2
Psat0s231g0040 Pisum sativum HOM05D001093 ORTHO05D000743 5.5e-20 101.7 112 43.8
arahy.Tifrunner.gnm1.ann1.ER6SHV Arachis hypogaea HOM05D008195 ORTHO05D000743 7.1e-20 101.3 118 43.2
Glyma.06G202900 Glycine max HOM05D007909 ORTHO05D000743 7.1e-20 101.3 117 41.9
Atru.chr13.1216 Acer truncatum HOM05D007909 ORTHO05D000743 1.2e-19 100.5 115 45.2
COL.COLO4_06865 Corchorus olitorius HOM05D007909 ORTHO05D000743 1.6e-19 100.1 130 39.2
Dinv22785 Davidia involucrata HOM05D001093 ORTHO05D000743 1.6e-19 100.1 123 46.3
QL03p074169 Quercus lobata HOM05D007909 ORTHO05D000743 1.6e-19 100.1 108 46.3
Glyma.04G163100 Glycine max HOM05D007909 ORTHO05D000743 2.1e-19 99.8 123 43.9
CSS0005519 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 3.5e-19 99.0 124 41.1
CsaV3_1G005950 Cucumis sativus L. HOM05D007909 ORTHO05D000743 3.5e-19 99.0 126 39.7
FAN12G1787 Fragaria x ananassa HOM05D008195 ORTHO05D000743 3.5e-19 99.0 81 63.0
Lalb_Chr23g0273991 Lupinus albus HOM05D001093 ORTHO05D000743 4.6e-19 98.6 123 41.5
TWI60G1066 Tripterygium wilfordii HOM05D001093 ORTHO05D000743 4.6e-19 98.6 121 42.1
arahy.Tifrunner.gnm1.ann1.7R0RVH Arachis hypogaea HOM05D001093 ORTHO05D000743 6.0e-19 98.2 120 41.7
MELO3C002025.2 Cucumis melo HOM05D007909 ORTHO05D000743 6.0e-19 98.2 118 40.7
QL10p019356 Quercus lobata HOM05D001093 ORTHO05D010605 1.0e-18 97.4 115 42.6
VMungo1309G0161 Vigna mungo HOM05D007909 ORTHO05D000743 1.0e-18 97.4 126 41.3
Phvul.009G191600 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 1.8e-18 96.7 117 43.6
TAR629G2812 Trochodendron aralioides HOM05D001093 ORTHO05D000743 3.9e-18 95.5 123 43.9
Rhsim08G0146400 Rhododendron simsii HOM05D001093 ORTHO05D000743 5.1e-18 95.1 127 38.6
vmacro17606 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 5.1e-18 95.1 127 40.2
Gohir.A12G182333 Gossypium hirsutum HOM05D008195 ORTHO05D000743 8.7e-18 94.4 131 41.2
TAR264G0006 Trochodendron aralioides HOM05D001093 ORTHO05D000743 8.7e-18 94.4 123 40.7
Medtr3g025330 Medicago truncatula HOM05D001093 ORTHO05D010605 1.1e-17 94.0 113 42.5
Nn3g17441 Nelumbo nucifera HOM05D001093 ORTHO05D000743 1.5e-17 93.6 133 41.4
Rhsim12G0151100 Rhododendron simsii HOM05D001093 ORTHO05D000743 1.5e-17 93.6 125 44.0
Lj1g0000797 Lotus japonicus HOM05D007909 ORTHO05D000743 1.9e-17 93.2 135 40.0
TPR.G19667 Trifolium pratense HOM05D007909 ORTHO05D000743 3.3e-17 92.4 122 40.2
TAR629G0348 Trochodendron aralioides HOM05D001391 ORTHO05D000743 3.3e-17 92.4 117 43.6
Carub.0008s2179 Capsella rubella HOM05D007909 ORTHO05D000743 1.3e-16 90.5 142 38.0
Phvul.009G191900 Phaseolus vulgaris HOM05D007909 ORTHO05D000743 2.1e-16 89.7 117 39.3
vmacro16499 Vaccinium macrocarpon HOM05D001093 ORTHO05D000743 2.1e-16 89.7 125 42.4
Actinidia16122 Actinidia chinensis HOM05D001093 ORTHO05D000743 2.8e-16 89.4 120 43.3
Thhalv10004389m.g Eutrema salsugineum HOM05D007909 ORTHO05D000743 2.8e-16 89.4 141 37.6
Sp2g24370 Schrenkiella parvula HOM05D007909 ORTHO05D000743 2.8e-16 89.4 120 41.7
BolC7t45005H Brassica oleracea HOM05D007909 ORTHO05D000743 3.7e-16 89.0 120 43.3
Gorai.008G198700 Gossypium raimondii HOM05D008195 ORTHO05D000743 3.7e-16 89.0 131 40.5
MD06G1202100 Malus domestica HOM05D001093 ORTHO05D000743 4.8e-16 88.6 130 36.9
Gohir.D12G185300 Gossypium hirsutum HOM05D008195 ORTHO05D000743 8.2e-16 87.8 131 39.7
A03p46770 Brassica napus HOM05D007909 ORTHO05D010605 1.1e-15 87.4 120 42.5
BraA03t13799Z Brassica rapa HOM05D007909 ORTHO05D010605 1.1e-15 87.4 120 42.5
C07p44810 Brassica napus HOM05D007909 ORTHO05D010605 2.4e-15 86.3 120 41.7
BcaC06g33178 Brassica carinata HOM05D007909 ORTHO05D010605 3.1e-15 85.9 140 37.9
Actinidia35035 Actinidia chinensis HOM05D001093 ORTHO05D000743 4.0e-15 85.5 125 39.2
AL8G37760 Arabidopsis lyrata HOM05D007909 ORTHO05D000743 5.3e-15 85.1 141 35.5
Ciclev10020157m.g Citrus clementina HOM05D001093 ORTHO05D010605 5.3e-15 85.1 108 39.8
Hund02591 Selenicereus undatus HOM05D001093 ORTHO05D000743 9.0e-15 84.3 132 34.1
Sopen06g024610 Solanum pennellii HOM05D008195 ORTHO05D000743 1.2e-14 84.0 106 39.6
Cc00_g03840 Coffea canephora HOM05D001093 ORTHO05D000743 2.0e-14 83.2 115 42.6
ClCG04G011830 Citrullus lanatus HOM05D000020 ORTHO05D000743 3.4e-14 82.4 98 38.8
AT5G61120 Arabidopsis thaliana HOM05D007909 ORTHO05D000743 1.3e-13 80.5 141 34.0
Actinidia27478 Actinidia chinensis HOM05D001093 ORTHO05D000743 2.2e-13 79.7 122 37.7
CAN.G111.39 Capsicum annuum HOM05D008195 ORTHO05D000743 2.2e-13 79.7 106 42.5
Oeu047262.2 Olea europaea HOM05D001093 ORTHO05D000743 2.9e-13 79.3 103 39.8
Solyc06g066140.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 2.9e-13 79.3 94 40.4
BcaB07g34220 Brassica carinata HOM05D007909 ORTHO05D000743 3.8e-13 79.0 124 41.9
SGA_v2.0_scaffold313G48311 Striga asiatica HOM05D001093 ORTHO05D000743 3.8e-13 79.0 126 34.9
QL09p031893 Quercus lobata HOM05D007909 ORTHO05D000743 4.9e-13 78.6 79 44.3
PGSC0003DMG400020472 Solanum tuberosum HOM05D008195 ORTHO05D000743 6.5e-13 78.2 106 37.7
Actinidia16168 Actinidia chinensis HOM05D008195 ORTHO05D000743 1.1e-12 77.4 101 39.6
PGSC0003DMG400026134 Solanum tuberosum HOM05D008195 ORTHO05D000743 1.1e-12 77.4 104 37.5
FvH4_5g13941 Fragaria vesca HOM05D001093 ORTHO05D000743 1.9e-12 76.6 130 33.8
Sc12g0006650 Simmondsia chinensis HOM05D001093 ORTHO05D000743 1.9e-12 76.6 123 35.0
Solyc06g066200.2 Solanum lycopersicum HOM05D008195 ORTHO05D000743 1.9e-12 76.6 106 38.7
THA.LOC104801226 Tarenaya hassleriana HOM05D007909 ORTHO05D000743 1.9e-12 76.6 120 38.3
Lj5A103G64 Lonicera japonica HOM05D001093 ORTHO05D000743 3.2e-12 75.9 103 37.9
Sopen06g021820 Solanum pennellii HOM05D008195 ORTHO05D000743 3.2e-12 75.9 106 38.7
BolC2t12182H Brassica oleracea HOM05D007909 ORTHO05D000743 4.2e-12 75.5 125 40.0
CARHR274780 Cardamine hirsuta HOM05D007909 ORTHO05D000743 5.5e-12 75.1 123 39.8
Migut.I00329 Erythranthe guttata HOM05D001093 ORTHO05D000743 5.5e-12 75.1 126 34.9
DCAR_007194 Daucus carota HOM05D001093 ORTHO05D000743 7.1e-12 74.7 101 40.6
C02p61340 Brassica napus HOM05D007909 ORTHO05D000743 9.3e-12 74.3 125 40.0
CSS0000288 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 9.3e-12 74.3 117 35.9
PSO801G0246 Papaver somniferum HOM05D001093 ORTHO05D000743 9.3e-12 74.3 105 41.0
Manes.14G085201 Manihot esculenta HOM05D001093 ORTHO05D000743 1.2e-11 73.9 126 36.5
ATR0064G095 Amborella trichopoda HOM05D001093 ORTHO05D000743 1.6e-11 73.6 124 32.3
EL10Ac5g11120 Beta vulgaris HOM05D015602 ORTHO05D006373 1.6e-11 73.6 133 32.3
Nitab4.5_0007689g0050 Nicotiana tabacum HOM05D008195 ORTHO05D000743 2.7e-11 72.8 133 32.3
QL10p019376 Quercus lobata HOM05D000003 ORTHO05D000004 3.5e-11 72.4 157 29.9
Aqoxy3G00533 Aquilegia oxysepala HOM05D001093 ORTHO05D000743 4.6e-11 72.0 109 37.6
MSTRG.22985 Avicennia marina HOM05D001093 ORTHO05D000743 4.6e-11 72.0 123 36.6
PGSC0003DMG400024640 Solanum tuberosum HOM05D008195 ORTHO05D000743 4.6e-11 72.0 103 39.8
Nitab4.5_0001485g0150 Nicotiana tabacum HOM05D008195 ORTHO05D000743 6.1e-11 71.6 133 32.3
PSO339G4557 Papaver somniferum HOM05D001093 ORTHO05D000743 6.1e-11 71.6 105 40.0
VMungo1309G2619 Vigna mungo HOM05D007909 ORTHO05D000743 6.1e-11 71.6 85 42.4
Aa31LG11G2230 Aethionema arabicum HOM05D007909 ORTHO05D000743 1.3e-10 70.5 120 33.3
PSO541G3559 Papaver somniferum HOM05D001093 ORTHO05D000743 1.8e-10 70.1 123 34.1
SEGI_01537 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 3.0e-10 69.3 150 33.3
PGSC0003DMG401020463 Solanum tuberosum HOM05D008195 ORTHO05D010950 3.0e-10 69.3 100 39.0
EL10Ac5g11122 Beta vulgaris HOM05D001093 ORTHO05D000743 5.1e-10 68.6 108 33.3
ECA247G2835 Erigeron canadensis HOM05D001093 ORTHO05D000743 5.1e-10 68.6 109 33.9
Solyc03g115180.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 5.1e-10 68.6 128 32.8
A02p41390 Brassica napus HOM05D007909 ORTHO05D000743 8.7e-10 67.8 125 37.6
BraA02t09081Z Brassica rapa HOM05D007909 ORTHO05D000743 8.7e-10 67.8 125 37.6
Solyc03g115160.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 8.7e-10 67.8 103 37.9
Sopen03g034220 Solanum pennellii HOM05D008195 ORTHO05D000743 8.7e-10 67.8 103 37.9
Prupe.5G204100 Prunus persica HOM05D008195 ORTHO05D000743 1.1e-09 67.4 107 33.6
SalBow5G5623 Salvia bowleyana HOM05D001093 ORTHO05D000743 1.1e-09 67.4 104 34.6
ATR0772G157 Amborella trichopoda HOM05D001093 ORTHO05D000743 2.5e-09 66.2 128 35.2
FAN08G2009 Fragaria x ananassa HOM05D008195 ORTHO05D000743 4.3e-09 65.5 158 27.8
RcHm_v2.0_Chr7g0183011 Rosa chinensis HOM05D008195 ORTHO05D000743 4.3e-09 65.5 83 39.8
Eucgr.B00584 Eucalyptus grandis HOM05D008195 ORTHO05D000743 5.7e-09 65.1 55 45.5
PSO675G5193 Papaver somniferum HOM05D001093 ORTHO05D000743 5.7e-09 65.1 123 31.7
BcaC03g18074 Brassica carinata HOM05D007909 ORTHO05D000743 1.3e-08 63.9 152 32.9
Thecc.02G330700 Theobroma cacao HOM05D001093 ORTHO05D000743 2.2e-08 63.2 108 32.4
PGSC0003DMG400037001 Solanum tuberosum HOM05D008195 ORTHO05D000743 3.7e-08 62.4 59 40.7
Lsat_1_v5_gn_3_106880 Lactuca sativa HOM05D001093 ORTHO05D000743 4.8e-08 62.0 128 34.4
Sopen06g024280 Solanum pennellii HOM05D008195 ORTHO05D000743 4.8e-08 62.0 79 35.4
SEGI_04156 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 6.3e-08 61.6 126 32.5
DCAR_011399 Daucus carota HOM05D001093 ORTHO05D000743 8.2e-08 61.2 121 31.4
Peaxi162Scf00842g00328 Petunia axillaris HOM05D001093 ORTHO05D000743 8.2e-08 61.2 119 34.5
SEGI_03967 Sequoiadendron giganteum HOM05D001093 ORTHO05D000743 8.2e-08 61.2 118 33.1
PGSC0003DMG400041231 Solanum tuberosum HOM05D008195 ORTHO05D010950 8.2e-08 61.2 63 38.1
unitig_749.g13437 Utricularia gibba HOM05D008195 ORTHO05D000743 8.2e-08 61.2 57 42.1
Cpa.g.sc49.46 Carica papaya HOM05D001093 ORTHO05D000743 1.4e-07 60.5 99 37.4
Ah.11g047850 Amaranthus hybridus HOM05D008195 ORTHO05D000743 2.4e-07 59.7 93 30.1
SMO347G0226 Selaginella moellendorffii HOM05D001093 ORTHO05D000743 2.4e-07 59.7 115 32.2
PGSC0003DMG400035870 Solanum tuberosum HOM05D008195 ORTHO05D010950 3.1e-07 59.3 71 33.8
CSS0013878 Camellia sinensis var. sinensis HOM05D001093 ORTHO05D000743 4.1e-07 58.9 105 33.3
CAN.G479.1 Capsicum annuum HOM05D008195 ORTHO05D010950 4.1e-07 58.9 91 36.3
FAN18G2461 Fragaria x ananassa HOM05D008195 ORTHO05D000743 4.1e-07 58.9 130 28.5
ECA232G2941 Erigeron canadensis HOM05D001093 ORTHO05D000743 5.3e-07 58.5 117 31.6
Sopen06g021660 Solanum pennellii HOM05D000006 ORTHO05D000001 5.3e-07 58.5 127 28.3
DCAR_030040 Daucus carota HOM05D001093 ORTHO05D000743 9.0e-07 57.8 92 35.9
Lj7A367T45 Lonicera japonica HOM05D001093 ORTHO05D000743 2.0e-06 56.6 120 31.7
A06p03830 Brassica napus HOM05D001093 ORTHO05D000743 2.6e-06 56.2 92 37.0
BraA06t23590Z Brassica rapa HOM05D001093 ORTHO05D000743 2.6e-06 56.2 92 37.0
PGSC0003DMG400016768 Solanum tuberosum HOM05D008195 ORTHO05D010950 2.6e-06 56.2 56 37.5
Psat1g092360 Pisum sativum HOM05D001093 ORTHO05D000743 3.4e-06 55.8 102 36.3
Solyc06g066360.3 Solanum lycopersicum HOM05D008195 ORTHO05D000743 3.4e-06 55.8 127 28.3
PGR083G1305 Punica granatum HOM05D007909 ORTHO05D000022 4.5e-06 55.5 106 32.1
Medtr1g099270 Medicago truncatula HOM05D001093 ORTHO05D000743 7.7e-06 54.7 146 28.1
BcaC08g43143 Brassica carinata HOM05D001093 ORTHO05D000743 1.0e-05 54.3 94 37.2
Os03g0421000 Oryza sativa ssp. japonica HOM05D001093 ORTHO05D000743 1.0e-05 54.3 104 30.8


User provided reference genes

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