Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1210100 Malus domestica HOM05D006748 ORTHO05D008553 3.8e-51 204.5 103 100.0
MD06G1200600 Malus domestica HOM05D006748 ORTHO05D008553 5.2e-48 194.1 101 94.1
RcHm_v2.0_Chr7g0182761 Rosa chinensis HOM05D006748 ORTHO05D008553 6.6e-43 177.2 99 88.9
FvH4_5g14060 Fragaria vesca HOM05D006748 ORTHO05D008553 8.6e-43 176.8 99 88.9
FvH4_5g14160 Fragaria vesca HOM05D006748 ORTHO05D008553 1.5e-42 176.0 99 88.9
Dinv10524 Davidia involucrata HOM05D006748 ORTHO05D008553 4.3e-42 174.5 99 84.8
FAN13G1579 Fragaria x ananassa HOM05D006748 ORTHO05D008553 7.3e-42 173.7 99 87.9
CANSAT80G2841 Cannabis sativa HOM05D006748 ORTHO05D008553 9.5e-42 173.3 100 82.0
Hma1.2p1_0060F.1_g033230 Hydrangea macrophylla HOM05D006748 ORTHO05D008553 9.5e-42 173.3 99 83.8
Cfa019312 Carpinus fangiana HOM05D006748 ORTHO05D008553 1.2e-41 172.9 99 83.8
Haze_07696 Corylus avellana HOM05D006748 ORTHO05D008553 2.1e-41 172.2 99 82.8
CiPaw.12G007800 Carya illinoinensis HOM05D006748 ORTHO05D008553 2.8e-41 171.8 99 83.8
Gohir.A12G181700 Gossypium hirsutum HOM05D006748 ORTHO05D008553 2.8e-41 171.8 99 83.8
Gohir.D12G184500 Gossypium hirsutum HOM05D006748 ORTHO05D008553 2.8e-41 171.8 99 83.8
Gorai.008G197900 Gossypium raimondii HOM05D006748 ORTHO05D008553 2.8e-41 171.8 99 83.8
Thecc.03G099400 Theobroma cacao HOM05D006748 ORTHO05D008553 4.7e-41 171.0 99 83.8
ClCG06G015720 Citrullus lanatus HOM05D006748 ORTHO05D008553 1.4e-40 169.5 100 83.0
AT5G07960 Arabidopsis thaliana HOM05D006748 ORTHO05D008553 1.8e-40 169.1 100 79.0
Sed0010236 Sechium edule HOM05D006748 ORTHO05D008553 2.3e-40 168.7 100 83.0
THA.LOC104818341 Tarenaya hassleriana HOM05D006748 ORTHO05D008553 2.3e-40 168.7 100 80.0
Duzib084G0059 Durio zibethinus HOM05D006748 ORTHO05D008553 3.1e-40 168.3 99 81.8
Cpa.g.sc94.24 Carica papaya HOM05D006748 ORTHO05D008553 4.0e-40 167.9 95 86.3
TAR622G0828 Trochodendron aralioides HOM05D006748 ORTHO05D008553 4.0e-40 167.9 97 82.5
Ciclev10023002m.g Citrus clementina HOM05D006748 ORTHO05D008553 8.9e-40 166.8 95 84.2
BcaB05g21592 Brassica carinata HOM05D006748 ORTHO05D008553 1.5e-39 166.0 98 78.6
Carub.0006s0686 Capsella rubella HOM05D006748 ORTHO05D008553 2.6e-39 165.2 100 78.0
Eucgr.K02517 Eucalyptus grandis HOM05D006748 ORTHO05D008553 3.4e-39 164.9 100 80.0
Nn3g17423 Nelumbo nucifera HOM05D006748 ORTHO05D008553 3.4e-39 164.9 99 79.8
Atru.chr9.414 Acer truncatum HOM05D006748 ORTHO05D008553 5.8e-39 164.1 100 80.0
CARHR205230 Cardamine hirsuta HOM05D006748 ORTHO05D008553 5.8e-39 164.1 100 77.0
CsaV3_1G002810 Cucumis sativus L. HOM05D006748 ORTHO05D008553 5.8e-39 164.1 100 81.0
Sp6g34980 Schrenkiella parvula HOM05D006748 ORTHO05D008553 5.8e-39 164.1 100 77.0
AL6G18300 Arabidopsis lyrata HOM05D006748 ORTHO05D008553 7.5e-39 163.7 100 77.0
Ca_18978_v3 Cicer arietinum L. HOM05D006748 ORTHO05D008553 7.5e-39 163.7 103 73.8
PSO541G5074 Papaver somniferum HOM05D006748 ORTHO05D008553 7.5e-39 163.7 99 78.8
PSO675G4773 Papaver somniferum HOM05D006748 ORTHO05D008553 7.5e-39 163.7 99 78.8
TPR.G12215 Trifolium pratense HOM05D006748 ORTHO05D008553 7.5e-39 163.7 103 73.8
Manes.06G086100 Manihot esculenta HOM05D006748 ORTHO05D008553 9.8e-39 163.3 99 78.8
Psat5g203080 Pisum sativum HOM05D006748 ORTHO05D008553 1.3e-38 162.9 103 72.8
Actinidia35032 Actinidia chinensis HOM05D006748 ORTHO05D008553 2.9e-38 161.8 99 79.8
BcaC06g32512 Brassica carinata HOM05D006748 ORTHO05D008553 2.9e-38 161.8 99 75.8
Thhalv10015079m.g Eutrema salsugineum HOM05D006748 ORTHO05D008553 2.9e-38 161.8 100 75.0
Medtr3g024170 Medicago truncatula HOM05D006748 ORTHO05D008553 3.7e-38 161.4 100 74.0
Medtr3g024190 Medicago truncatula HOM05D006748 ORTHO05D008553 3.7e-38 161.4 100 74.0
Os03g0756800 Oryza sativa ssp. japonica HOM05D006748 ORTHO05D008553 3.7e-38 161.4 97 74.2
Potri.015G056300 Populus trichocarpa HOM05D006748 ORTHO05D008553 3.7e-38 161.4 99 77.8
BcaC03g13204 Brassica carinata HOM05D006748 ORTHO05D008553 4.9e-38 161.0 102 73.5
C02p03380 Brassica napus HOM05D006748 ORTHO05D008553 4.9e-38 161.0 102 73.5
BolC2t06300H Brassica oleracea HOM05D006748 ORTHO05D008553 4.9e-38 161.0 102 73.5
C09p68960 Brassica napus HOM05D006748 ORTHO05D008553 6.4e-38 160.6 99 75.8
BraA02t04939Z Brassica rapa HOM05D006748 ORTHO05D008553 6.4e-38 160.6 101 74.3
Glyma.06G201800 Glycine max HOM05D006748 ORTHO05D008553 8.3e-38 160.2 100 72.0
Phvul.009G193300 Phaseolus vulgaris HOM05D006748 ORTHO05D008553 8.3e-38 160.2 100 72.0
Sed0016176 Sechium edule HOM05D006748 ORTHO05D008553 1.4e-37 159.5 100 77.0
Lj1g0012744 Lotus japonicus HOM05D006748 ORTHO05D008553 2.4e-37 158.7 100 74.0
Lalb_Chr09g0334301 Lupinus albus HOM05D006748 ORTHO05D008553 2.4e-37 158.7 100 73.0
QL10p019141 Quercus lobata HOM05D006748 ORTHO05D008553 2.4e-37 158.7 97 78.4
TWI81G0385 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 3.2e-37 158.3 98 76.5
Zm00001eb057720 Zea mays HOM05D006748 ORTHO05D008553 4.1e-37 157.9 96 74.0
BolC9t59641H Brassica oleracea HOM05D006748 ORTHO05D008553 5.4e-37 157.5 99 74.7
CSS0043022 Camellia sinensis var. sinensis HOM05D006748 ORTHO05D008553 5.4e-37 157.5 102 75.5
Oeu008258.1 Olea europaea HOM05D006748 ORTHO05D008553 1.2e-36 156.4 93 81.7
Potri.012G065500 Populus trichocarpa HOM05D006748 ORTHO05D008553 1.2e-36 156.4 98 73.5
Aa31LG3G18570 Aethionema arabicum HOM05D006748 ORTHO05D008553 1.6e-36 156.0 100 74.0
Lalb_Chr16g0391551 Lupinus albus HOM05D006748 ORTHO05D008553 2.7e-36 155.2 100 73.0
PGR044G1724 Punica granatum HOM05D006748 ORTHO05D008553 3.5e-36 154.8 99 74.7
Lj5A105G56 Lonicera japonica HOM05D006748 ORTHO05D008553 1.3e-35 152.9 99 71.7
GSVIVG01007891001 Vitis vinifera HOM05D006748 ORTHO05D008553 2.3e-35 152.1 101 74.3
Peaxi162Scf00702g00422 Petunia axillaris HOM05D006748 ORTHO05D008553 3.0e-35 151.8 103 71.8
Sopen06g026810 Solanum pennellii HOM05D006748 ORTHO05D008553 3.0e-35 151.8 103 71.8
Solyc06g069520.3 Solanum lycopersicum HOM05D006748 ORTHO05D008553 5.1e-35 151.0 101 72.3
Lsat_1_v5_gn_1_13560 Lactuca sativa HOM05D006748 ORTHO05D008553 8.6e-35 150.2 101 70.3
Nitab4.5_0005160g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 1.1e-34 149.8 93 78.5
Nitab4.5_0011867g0020 Nicotiana tabacum HOM05D006748 ORTHO05D008553 1.1e-34 149.8 93 78.5
unitig_750.g28509 Utricularia gibba HOM05D006748 ORTHO05D008553 4.3e-34 147.9 102 70.6
SHI30118 Sapria himalayana HOM05D006748 ORTHO05D008553 7.3e-34 147.1 90 76.7
HPP92_019473 Vanilla planifolia HOM05D006748 ORTHO05D008553 1.2e-33 146.4 90 75.6
HanXRQChr02g0044721 Helianthus annuus HOM05D006748 ORTHO05D008553 2.1e-33 145.6 96 72.9
Hund09880 Selenicereus undatus HOM05D006748 ORTHO05D008553 3.6e-33 144.8 98 70.4
SGA_v2.0_scaffold49G18162 Striga asiatica HOM05D006748 ORTHO05D008553 4.7e-33 144.4 103 68.0
TWI60G0647 Tripterygium wilfordii HOM05D006748 ORTHO05D008553 4.7e-33 144.4 97 71.1
EL10Ac5g11112 Beta vulgaris HOM05D006748 ORTHO05D008553 1.8e-32 142.5 104 73.1
MSTRG.22979 Avicennia marina HOM05D006748 ORTHO05D008553 3.1e-32 141.7 103 69.9
Migut.I00325 Erythranthe guttata HOM05D006748 ORTHO05D008553 3.1e-32 141.7 103 69.9
QL09p026979 Quercus lobata HOM05D006748 ORTHO05D008553 6.8e-32 140.6 129 58.1
Hund02598 Selenicereus undatus HOM05D006748 ORTHO05D008553 6.8e-32 140.6 97 69.1
ECA247G1600 Erigeron canadensis HOM05D006748 ORTHO05D008553 2.6e-31 138.7 96 68.8
Cc10_g05660 Coffea canephora HOM05D006748 ORTHO05D008553 5.8e-31 137.5 88 75.0
Actinidia19003 Actinidia chinensis HOM05D006748 ORTHO05D008553 9.9e-31 136.7 143 53.8
Aqoxy3G03609 Aquilegia oxysepala HOM05D006748 ORTHO05D008553 8.3e-30 133.7 103 68.0
Sc12g0006600 Simmondsia chinensis HOM05D006748 ORTHO05D008553 4.1e-29 131.3 79 82.3
Manes.14G084550 Manihot esculenta HOM05D006748 ORTHO05D008553 1.2e-28 129.8 80 78.8
CDE05G0122 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 1.7e-27 125.9 101 63.4
VMungo1309G2295 Vigna mungo HOM05D006748 ORTHO05D008553 2.3e-27 125.6 81 71.6
SMO201G0125 Selaginella moellendorffii HOM05D006748 ORTHO05D008553 8.6e-27 123.6 91 62.6
Mapoly0019s0070 Marchantia polymorpha HOM05D006748 ORTHO05D008553 1.9e-26 122.5 89 65.2
SGA_v2.0_scaffold25G10944 Striga asiatica HOM05D006748 ORTHO05D008553 3.3e-26 121.7 95 65.3
arahy.Tifrunner.gnm1.ann1.HPW464 Arachis hypogaea HOM05D006748 ORTHO05D008553 5.6e-26 120.9 80 71.2
vmacro16507 Vaccinium macrocarpon HOM05D006748 ORTHO05D008553 5.6e-26 120.9 80 73.8
Rhsim12G0151700 Rhododendron simsii HOM05D006748 ORTHO05D008553 9.5e-26 120.2 79 74.7
HPP92_006054 Vanilla planifolia HOM05D006748 ORTHO05D008553 1.2e-25 119.8 91 60.4
CBR_g90015 Chara braunii HOM05D006748 ORTHO05D008553 4.0e-24 114.8 92 58.7
Pp3c14_26790 Physcomitrium patens HOM05D006748 ORTHO05D008553 7.6e-23 110.5 89 59.6
AUR62008510 Chenopodium quinoa HOM05D006748 ORTHO05D008553 6.4e-22 107.5 85 70.6
ATR0064G062 Amborella trichopoda HOM05D006748 ORTHO05D008553 2.4e-21 105.5 74 64.9
Sabra15G0081500 Salix brachista HOM05D006748 ORTHO05D008553 4.2e-21 104.8 81 66.7
BraA10t44914Z Brassica rapa HOM05D006748 ORTHO05D008553 9.2e-21 103.6 57 80.7
AUR62021580 Chenopodium quinoa HOM05D006748 ORTHO05D008553 9.2e-21 103.6 80 72.5
MELO3C017217.2 Cucumis melo HOM05D006748 ORTHO05D008553 3.9e-19 98.2 54 83.3
A10p28650 Brassica napus HOM05D006748 ORTHO05D008553 5.1e-19 97.8 54 79.6
HanXRQChr16g0510351 Helianthus annuus HOM05D006748 ORTHO05D008553 1.5e-18 96.3 71 66.2
AagrBONN_evm.TU.Sc2ySwM_117.1931 Anthoceros agrestis HOM05D006748 ORTHO05D008553 9.6e-18 93.6 98 52.0
HanXRQChr14g0449601 Helianthus annuus HOM05D006748 ORTHO05D008553 1.9e-13 79.3 52 75.0
COL.COLO4_37587 Corchorus olitorius HOM05D006748 ORTHO05D008553 4.3e-10 68.2 46 69.6
CDE02G4382 Ceratophyllum demersum HOM05D006748 ORTHO05D008553 2.6e-07 58.9 45 55.6
SEGI_29622 Sequoiadendron giganteum HOM05D006748 ORTHO05D008553 2.6e-07 58.9 45 62.2
MCO16G157 Micromonas commoda HOM05D006748 ORTHO05D008553 4.5e-07 58.2 82 32.9


User provided reference genes

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