Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1204900 Malus domestica HOM05D007937 ORTHO05D010000 8.3e-120 433.7 219 100.0
Prupe.5G198200 Prunus persica HOM05D007937 ORTHO05D010000 2.2e-43 179.9 252 47.2
Thecc.03G094000 Theobroma cacao HOM05D007937 ORTHO05D010000 5.3e-42 175.3 218 48.6
Duzib205G0123 Durio zibethinus HOM05D007937 ORTHO05D010000 2.1e-38 163.3 232 45.7
QL10p017869 Quercus lobata HOM05D007937 ORTHO05D010000 1.0e-37 161.0 214 45.8
Gohir.A12G179200 Gossypium hirsutum HOM05D007937 ORTHO05D010000 1.8e-34 150.2 218 43.1
Atru.chr9.343 Acer truncatum HOM05D007937 ORTHO05D010000 2.4e-34 149.8 236 43.2
Ciclev10023621m.g Citrus clementina HOM05D007937 ORTHO05D010000 5.0e-32 142.1 205 44.9
Glyma.05G024902 Glycine max HOM05D007937 ORTHO05D010000 1.2e-30 137.5 238 40.8
Hma1.2p1_0322F.1_g125050 Hydrangea macrophylla HOM05D007937 ORTHO05D010000 8.8e-29 131.3 213 37.6
Cfa019275 Carpinus fangiana HOM05D007937 ORTHO05D010000 2.0e-28 130.2 216 40.3
Haze_07650 Corylus avellana HOM05D007937 ORTHO05D010000 2.0e-28 130.2 216 40.3
Eucgr.B00539 Eucalyptus grandis HOM05D007937 ORTHO05D010000 2.6e-28 129.8 219 38.8
CiPaw.05G164900 Carya illinoinensis HOM05D007937 ORTHO05D010000 5.7e-28 128.6 220 40.5
Lsat_1_v5_gn_4_109161 Lactuca sativa HOM05D007937 ORTHO05D010000 2.8e-27 126.3 226 38.9
Potri.012G068400 Populus trichocarpa HOM05D007937 ORTHO05D010000 6.3e-27 125.2 218 39.9
Gohir.D12G181800 Gossypium hirsutum HOM05D007937 ORTHO05D010000 3.1e-26 122.9 217 36.9
Gorai.008G195100 Gossypium raimondii HOM05D007937 ORTHO05D010000 5.3e-26 122.1 218 36.7
DCAR_016813 Daucus carota HOM05D007937 ORTHO05D010000 7.0e-26 121.7 230 35.2
Glyma.17G102300 Glycine max HOM05D007937 ORTHO05D010000 7.7e-25 118.2 113 55.8
ClCG06G016020 Citrullus lanatus HOM05D007937 ORTHO05D010000 2.2e-24 116.7 223 36.8
Phvul.003G188300 Phaseolus vulgaris HOM05D007937 ORTHO05D010000 1.1e-23 114.4 236 35.6
TWI73G0154 Tripterygium wilfordii HOM05D007937 ORTHO05D010000 1.1e-23 114.4 85 61.2
Psat4g049560 Pisum sativum HOM05D007937 ORTHO05D010000 2.5e-23 113.2 118 52.5
TPR.G1984 Trifolium pratense HOM05D007937 ORTHO05D010000 2.5e-23 113.2 118 53.4
Dinv38744 Davidia involucrata HOM05D007937 ORTHO05D010000 4.2e-23 112.5 101 54.5
TAR371G1098 Trochodendron aralioides HOM05D007937 ORTHO05D010000 5.5e-23 112.1 96 56.2
Sed0000033 Sechium edule HOM05D007937 ORTHO05D010000 9.4e-23 111.3 95 57.9
VMungo1215G0396 Vigna mungo HOM05D007937 ORTHO05D010000 1.2e-22 110.9 110 53.6
Cpa.g.sc103.102 Carica papaya HOM05D007937 ORTHO05D010000 3.6e-22 109.4 98 56.1
COL.COLO4_36944 Corchorus olitorius HOM05D007937 ORTHO05D010000 3.6e-22 109.4 175 42.9
MELO3C017189.2 Cucumis melo HOM05D007937 ORTHO05D010000 8.0e-22 108.2 102 52.9
Ca_21806_v3 Cicer arietinum L. HOM05D007937 ORTHO05D010000 1.0e-21 107.8 111 56.8
MBI07_g10352_MAGBIO Magnolia biondii HOM05D007937 ORTHO05D010000 1.0e-21 107.8 234 35.0
Lalb_Chr12g0196971 Lupinus albus HOM05D007937 ORTHO05D010000 1.8e-21 107.1 231 35.9
Lj4g0021312 Lotus japonicus HOM05D007937 ORTHO05D010000 2.3e-21 106.7 103 55.3
Actinidia35012 Actinidia chinensis HOM05D007937 ORTHO05D010000 3.0e-21 106.3 118 52.5
CDE07G0962 Ceratophyllum demersum HOM05D003675 ORTHO05D004318 4.0e-21 105.9 206 34.5
ATR0208G029 Amborella trichopoda HOM05D007937 ORTHO05D010000 5.2e-21 105.5 218 33.0
MD06G1197500 Malus domestica HOM05D007937 ORTHO05D010000 5.2e-21 105.5 174 40.2
C07p45010 Brassica napus HOM05D007937 ORTHO05D010000 1.2e-20 104.4 103 51.5
Medtr7g028623 Medicago truncatula HOM05D007937 ORTHO05D010000 1.2e-20 104.4 118 50.0
Sabra12G0047300 Salix brachista HOM05D007937 ORTHO05D010000 1.2e-20 104.4 100 55.0
Sp2g24580 Schrenkiella parvula HOM05D007937 ORTHO05D010000 1.2e-20 104.4 103 51.5
GSVIVG01013742001 Vitis vinifera HOM05D007937 ORTHO05D010000 1.2e-20 104.4 73 64.4
Manes.14G081700 Manihot esculenta HOM05D007937 ORTHO05D010000 2.0e-20 103.6 101 53.5
BraA03t13817Z Brassica rapa HOM05D007937 ORTHO05D010000 7.5e-20 101.7 103 50.5
Carub.0008s2204 Capsella rubella HOM05D007937 ORTHO05D010000 7.5e-20 101.7 95 51.6
Thhalv10004085m.g Eutrema salsugineum HOM05D007937 ORTHO05D010000 7.5e-20 101.7 72 61.1
AT5G61370 Arabidopsis thaliana HOM05D007937 ORTHO05D010000 9.8e-20 101.3 111 48.6
AL8G38040 Arabidopsis lyrata HOM05D007937 ORTHO05D010000 1.3e-19 100.9 95 48.4
BolC7t45024H Brassica oleracea HOM05D007937 ORTHO05D010000 1.3e-19 100.9 103 50.5
THA.LOC104801452 Tarenaya hassleriana HOM05D007937 ORTHO05D010000 2.8e-19 99.8 88 48.9
A03p46970 Brassica napus HOM05D007937 ORTHO05D010000 8.3e-19 98.2 103 49.5
Aqoxy3G00684 Aquilegia oxysepala HOM05D007937 ORTHO05D010000 1.4e-18 97.4 218 32.6
ECA232G3137 Erigeron canadensis HOM05D007937 ORTHO05D010000 1.4e-18 97.4 139 41.7
arahy.Tifrunner.gnm1.ann1.EN1JYH Arachis hypogaea HOM05D007937 ORTHO05D010000 3.1e-18 96.3 101 53.5
AUR62038114 Chenopodium quinoa HOM05D007937 ORTHO05D010000 7.0e-18 95.1 103 50.5
BraA03t13819Z Brassica rapa HOM05D007937 ORTHO05D010000 9.1e-18 94.7 110 46.4
CARHR275130 Cardamine hirsuta HOM05D007937 ORTHO05D010000 3.5e-17 92.8 109 47.7
AUR62021634 Chenopodium quinoa HOM05D007937 ORTHO05D010000 3.5e-17 92.8 72 59.7
Nn3g17327 Nelumbo nucifera HOM05D007937 ORTHO05D010000 4.5e-17 92.4 100 47.0
ECA236G3917 Erigeron canadensis HOM05D007937 ORTHO05D010000 5.9e-17 92.0 83 53.0
Rhsim12G0154000 Rhododendron simsii HOM05D007937 ORTHO05D010000 5.9e-17 92.0 106 52.8
AUR62008461 Chenopodium quinoa HOM05D007937 ORTHO05D010000 3.8e-16 89.4 103 50.5
AUR62043076 Chenopodium quinoa HOM05D007937 ORTHO05D010000 8.5e-16 88.2 103 48.5
CsaV3_1G002530 Cucumis sativus L. HOM05D007937 ORTHO05D010000 8.5e-16 88.2 61 63.9
Aa31LG11G2050 Aethionema arabicum HOM05D007937 ORTHO05D010000 1.5e-15 87.4 219 29.7
CSS0004959 Camellia sinensis var. sinensis HOM05D007937 ORTHO05D010000 3.2e-15 86.3 72 59.7
Actinidia19019 Actinidia chinensis HOM05D007937 ORTHO05D010000 5.5e-15 85.5 111 43.2
HanXRQChr16g0502801 Helianthus annuus HOM05D007937 ORTHO05D010000 7.2e-15 85.1 225 30.7
Os10g0422300 Oryza sativa ssp. japonica HOM05D007937 ORTHO05D010000 1.4e-13 80.9 237 31.6
COL.COLO4_36946 Corchorus olitorius HOM05D007937 ORTHO05D010000 2.6e-12 76.6 51 66.7
Medtr4g108900 Medicago truncatula HOM05D007937 ORTHO05D010000 6.3e-11 72.0 41 73.2
Lj9A466T78 Lonicera japonica HOM05D007937 ORTHO05D010000 1.1e-10 71.2 44 70.5
CDE04G0941 Ceratophyllum demersum HOM05D007937 ORTHO05D010000 2.4e-10 70.1 65 47.7
Zm00001eb047840 Zea mays HOM05D007937 ORTHO05D010000 3.1e-10 69.7 73 47.9
PGR062G0006 Punica granatum HOM05D007937 ORTHO05D010000 6.6e-08 62.0 76 44.7
PGR083G2710 Punica granatum HOM05D007937 ORTHO05D010000 6.6e-08 62.0 76 44.7
ECA238G4024 Erigeron canadensis HOM05D002609 ORTHO05D002820 9.5e-07 58.2 70 45.7


User provided reference genes

Program Settings