Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 9.8e-106 386.7 185 100.0
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 8.9e-83 310.5 198 77.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 2.8e-76 288.9 197 74.1
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.6e-71 273.1 197 68.5
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-70 270.0 197 68.0
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.3e-70 269.2 197 67.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 3.4e-66 255.4 197 65.0
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.0e-62 243.8 182 64.3
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 1.3e-62 243.4 182 65.9
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.8e-62 243.0 195 63.6
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.9e-62 241.9 196 64.3
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.9e-62 241.9 182 64.8
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 8.7e-62 240.7 197 60.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 3.3e-61 238.8 196 62.2
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.1e-60 236.1 197 60.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.1e-59 233.8 180 65.6
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.1e-59 233.8 197 60.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 1.8e-59 233.0 197 59.9
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 2.4e-59 232.6 197 60.4
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 5.3e-59 231.5 197 59.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 9.0e-59 230.7 182 63.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 7.6e-58 227.6 197 57.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.0e-57 227.3 239 52.7
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.9e-57 225.7 197 57.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.1e-56 223.8 182 59.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.4e-56 223.4 180 60.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.2e-56 221.9 197 56.9
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 4.2e-56 221.9 197 56.9
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 9.3e-56 220.7 182 59.3
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.6e-55 219.9 182 55.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.5e-55 218.8 197 56.3
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 4.6e-55 218.4 197 56.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.8e-54 216.5 186 58.1
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.8e-54 216.5 182 58.2
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.3e-54 216.1 198 53.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 3.9e-54 215.3 198 55.1
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.9e-54 215.3 182 61.5
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.9e-54 215.3 182 57.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 5.1e-54 214.9 211 55.0
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.7e-54 214.2 182 58.8
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-53 213.8 197 53.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.9e-53 213.0 182 57.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.9e-53 213.0 182 56.6
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.3e-53 212.2 181 55.8
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 4.3e-53 211.8 182 56.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 5.7e-53 211.5 198 54.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 9.6e-53 210.7 182 56.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.1e-52 209.5 198 54.0
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 2.8e-52 209.1 182 55.5
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.7e-52 208.8 198 54.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 6.3e-52 208.0 198 51.5
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 8.2e-52 207.6 198 54.5
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 8.2e-52 207.6 198 52.0
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.1e-51 207.2 197 54.3
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.4e-51 206.8 182 57.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 2.4e-51 206.1 182 52.2
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.4e-51 206.1 197 53.8
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.1e-51 205.7 193 55.4
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.1e-51 205.3 198 53.5
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 6.9e-51 204.5 180 57.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.0e-50 203.0 182 56.6
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.5e-50 201.8 198 53.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 4.5e-50 201.8 198 53.5
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 4.5e-50 201.8 197 49.7
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.9e-50 201.4 198 53.0
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.0e-49 200.7 198 52.5
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.0e-49 200.7 182 53.8
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.4e-48 196.8 186 53.2
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.5e-48 194.9 182 53.3
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 7.2e-48 194.5 167 58.1
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.2e-47 193.7 213 47.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.6e-47 193.4 168 54.2
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 6.1e-47 191.4 182 51.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.1e-45 187.2 183 52.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 4.3e-45 185.3 185 50.8
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.3e-45 185.3 181 49.7
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.3e-44 183.7 197 47.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.7e-44 182.2 182 49.5
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 8.2e-44 181.0 181 52.5
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.9e-43 177.9 166 54.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 7.7e-42 174.5 182 50.0
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 2.2e-41 172.9 298 38.3
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.0e-41 171.8 185 49.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.5e-40 169.5 179 49.7
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 5.5e-40 168.3 154 57.1
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 5.5e-40 168.3 179 49.7
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.0e-38 162.5 140 59.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.0e-38 162.5 136 58.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.3e-36 157.1 180 47.2
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.2e-36 156.4 159 47.2
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 2.9e-33 146.0 179 41.9
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 5.0e-33 145.2 179 44.7
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 2.1e-31 139.8 105 62.9
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 4.7e-31 138.7 202 42.6
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 4.7e-31 138.7 202 42.6
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 2.3e-30 136.3 161 49.1
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.0e-30 136.0 212 38.2
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.3e-28 130.6 199 39.2
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 4.5e-26 122.1 90 62.2
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.7e-23 112.8 193 34.2
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.2e-20 103.2 112 46.4
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-20 102.8 109 45.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 6.3e-20 101.7 80 62.5
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 3.1e-19 99.4 74 66.2
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-15 86.7 160 36.9
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.0e-14 82.8 79 50.6
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 6.8e-14 81.6 60 66.7
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.4e-11 73.2 78 43.6
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.1e-11 72.8 113 35.4
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 3.6e-07 59.3 45 62.2
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 3.0e-06 56.2 40 67.5


User provided reference genes

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