Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.3e-61 237.3 121 100.0
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 1.6e-32 142.9 116 68.1
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.1e-28 130.2 116 62.1
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.9e-25 119.4 126 54.8
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 7.3e-25 117.5 116 57.8
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 7.3e-25 117.5 112 55.4
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 4.7e-24 114.8 114 52.6
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 6.2e-24 114.4 104 60.6
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 8.0e-24 114.0 111 55.9
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.0e-23 113.6 103 53.4
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.8e-23 112.8 112 50.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.1e-23 112.1 103 55.3
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 3.1e-23 112.1 100 59.0
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.8e-23 110.9 118 52.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 6.8e-23 110.9 104 59.6
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.2e-22 110.2 122 47.5
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.2e-22 110.2 122 47.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.2e-22 110.2 107 50.5
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.2e-22 110.2 100 56.0
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.2e-22 110.2 100 55.0
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.2e-22 110.2 103 60.2
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.0e-22 109.4 104 52.9
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.0e-22 109.4 111 53.2
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.6e-22 109.0 108 50.9
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.6e-22 109.0 102 56.9
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.4e-22 108.6 115 53.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-22 108.2 104 56.7
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.4e-22 108.2 113 54.0
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 5.8e-22 107.8 116 48.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 5.8e-22 107.8 113 54.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 7.5e-22 107.5 104 54.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 9.8e-22 107.1 103 57.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 9.8e-22 107.1 103 55.3
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.3e-21 106.7 117 46.2
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.3e-21 106.7 103 48.5
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.3e-21 106.7 101 54.5
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.7e-21 106.3 121 47.9
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.2e-21 105.9 104 53.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 2.9e-21 105.5 116 51.7
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 2.9e-21 105.5 106 50.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 3.7e-21 105.1 111 51.4
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.9e-21 104.8 103 53.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 4.9e-21 104.8 104 52.9
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 4.9e-21 104.8 107 50.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 4.9e-21 104.8 103 56.3
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 6.4e-21 104.4 103 51.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 6.4e-21 104.4 119 47.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 8.3e-21 104.0 105 50.5
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 8.3e-21 104.0 109 52.3
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.4e-20 103.2 101 52.5
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.4e-20 103.2 104 51.9
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.9e-20 102.8 116 45.7
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 3.2e-20 102.1 105 51.4
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 4.1e-20 101.7 100 56.0
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.4e-20 101.3 104 52.9
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 5.4e-20 101.3 103 50.5
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 7.0e-20 100.9 101 52.5
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 9.2e-20 100.5 103 50.5
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 9.2e-20 100.5 106 50.9
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 9.2e-20 100.5 103 49.5
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.0e-19 99.4 117 47.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 3.5e-19 98.6 103 50.5
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 6.0e-19 97.8 109 44.0
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 7.8e-19 97.4 138 44.2
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.3e-18 96.7 114 48.2
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 1.7e-18 96.3 104 50.0
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.0e-18 95.5 104 50.0
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 5.0e-18 94.7 102 51.0
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 6.6e-18 94.4 128 46.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 8.6e-18 94.0 103 47.6
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 8.6e-18 94.0 103 46.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 1.5e-17 93.2 114 44.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 2.5e-17 92.4 99 47.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 3.3e-17 92.0 114 43.9
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.2e-16 90.1 117 43.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.2e-16 90.1 98 48.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 2.8e-16 89.0 155 37.4
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 8.1e-16 87.4 100 45.0
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.1e-16 87.4 62 69.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 8.1e-16 87.4 109 45.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.1e-15 87.0 119 42.9
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.3e-15 85.9 103 44.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 5.2e-15 84.7 105 47.6
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 6.8e-15 84.3 106 47.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.2e-14 83.6 96 43.8
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.4e-14 82.0 102 48.0
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.4e-12 76.6 104 46.2
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 5.4e-12 74.7 56 64.3
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.2e-11 73.6 95 41.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.6e-11 73.2 61 60.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 6.0e-11 71.2 55 60.0
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.7e-10 69.7 100 46.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 1.7e-10 69.7 53 62.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 6.8e-07 57.8 61 52.5
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.8e-06 54.7 52 53.8


User provided reference genes

Program Settings