Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 5.7e-179 630.9 350 100.0
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 9.1e-145 517.3 321 89.4
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 1.3e-111 407.1 341 71.8
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 5.8e-99 365.2 357 66.9
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 7.8e-96 354.8 351 64.4
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.3e-94 348.2 360 63.9
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.6e-91 338.2 353 62.9
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 4.6e-88 328.9 358 62.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.3e-87 327.4 350 62.6
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.6e-78 294.7 348 56.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 2.4e-76 290.0 337 58.8
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 1.5e-75 287.3 358 55.6
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.4e-73 280.8 370 56.8
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 4.2e-73 279.3 369 56.1
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.0e-72 275.4 348 54.0
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 1.9e-70 270.4 354 53.7
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 4.3e-70 269.2 351 55.0
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 9.6e-70 268.1 338 56.5
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 9.6e-70 268.1 323 56.0
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.6e-69 267.3 359 53.8
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.6e-69 267.3 343 54.5
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.4e-68 264.2 359 53.2
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.3e-66 257.7 332 55.1
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.3e-66 257.7 365 51.5
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 2.5e-65 253.4 357 51.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.5e-65 253.4 347 54.5
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.2e-65 253.1 357 53.2
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 4.2e-65 252.7 360 52.5
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 9.3e-65 251.5 359 51.8
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.7e-63 245.4 346 51.4
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.7e-63 245.4 385 48.3
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 4.3e-62 242.7 353 52.1
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.4e-62 241.9 338 50.6
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 1.3e-61 241.1 343 53.1
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.1e-60 238.0 360 49.7
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 1.4e-60 237.7 358 49.7
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 4.1e-60 236.1 340 51.8
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 4.1e-60 236.1 352 49.7
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 4.1e-60 236.1 361 50.4
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 6.9e-60 235.3 298 56.0
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.5e-59 234.2 376 47.9
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 5.9e-59 232.3 368 47.6
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 7.7e-59 231.9 346 47.7
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.0e-58 231.5 367 48.5
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.5e-57 226.9 338 50.0
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 5.5e-57 225.7 359 49.0
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 7.2e-57 225.3 350 47.7
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 7.2e-57 225.3 327 49.8
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.6e-56 224.2 361 49.0
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 8.8e-55 218.4 333 49.5
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 8.8e-55 218.4 380 45.5
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 1.1e-54 218.0 367 48.0
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 9.7e-54 214.9 364 46.7
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.2e-53 213.8 362 46.1
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.7e-53 213.0 363 47.9
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 6.3e-53 212.2 355 47.0
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 6.3e-53 212.2 363 46.0
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.1e-52 211.5 364 45.9
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 1.8e-52 210.7 331 46.5
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 2.4e-52 210.3 343 47.8
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.4e-52 210.3 368 47.0
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 5.3e-52 209.1 359 47.4
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 2.0e-51 207.2 374 46.8
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 3.4e-51 206.5 339 47.8
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 5.9e-51 205.7 361 46.8
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.0e-50 204.9 358 47.8
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 1.3e-50 204.5 361 46.0
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 2.2e-50 203.8 368 47.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 2.2e-50 203.8 388 45.4
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.9e-50 203.4 348 48.0
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 6.5e-50 202.2 363 46.6
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 6.5e-50 202.2 345 46.1
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 1.1e-49 201.4 333 46.2
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.5e-49 200.3 342 45.9
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 5.5e-49 199.1 330 47.0
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 5.5e-49 199.1 359 45.7
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 7.2e-49 198.7 363 45.5
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.2e-48 198.0 354 44.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 2.1e-48 197.2 367 46.9
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-48 197.2 364 46.2
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 2.7e-48 196.8 354 45.2
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.0e-47 194.9 366 45.9
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 1.0e-47 194.9 350 44.9
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 1.4e-47 194.5 362 44.5
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.4e-47 194.5 301 48.8
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 1.8e-47 194.1 359 47.1
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.3e-47 193.7 350 43.4
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 3.9e-47 193.0 389 44.2
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 6.7e-47 192.2 348 45.1
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 6.7e-47 192.2 351 46.2
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.1e-46 191.4 366 46.7
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-46 189.5 351 43.6
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 7.4e-46 188.7 357 45.1
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 9.7e-46 188.3 350 43.1
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 8.2e-45 185.3 352 40.9
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.8e-44 184.1 351 44.7
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 4.1e-44 183.0 236 51.3
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 4.1e-44 183.0 350 43.4
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 4.1e-44 183.0 280 48.6
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 7.0e-44 182.2 399 43.6
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 9.1e-44 181.8 332 44.9
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.5e-43 181.0 327 43.4
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.5e-43 181.0 319 42.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-42 178.3 356 44.7
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 1.3e-42 177.9 351 42.7
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 1.9e-41 174.1 360 43.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 5.5e-41 172.6 310 47.1
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.7e-40 170.2 365 41.6
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.7e-40 170.2 347 41.8
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 6.7e-39 165.6 286 45.8
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 4.4e-38 162.9 243 46.9
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 4.8e-37 159.5 342 40.4
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.1e-36 158.3 348 40.8
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 3.5e-35 153.3 335 41.2
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 6.5e-34 149.1 345 39.4
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.8e-31 141.0 361 39.6
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 7.5e-30 135.6 403 36.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 9.7e-30 135.2 344 37.2
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 5.3e-28 129.4 336 37.8
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 9.1e-28 128.6 248 41.5
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.2e-27 128.3 358 37.2
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 1.2e-27 128.3 364 37.1
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 1.2e-27 128.3 364 37.1
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 1.2e-27 128.3 364 37.1
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.6e-27 127.9 330 38.2
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 1.6e-27 127.9 346 37.3
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 2.0e-27 127.5 368 37.5
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 5.9e-27 125.9 316 40.5
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 7.7e-27 125.6 359 35.9
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 2.9e-26 123.6 322 36.3
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 6.1e-24 115.9 332 37.0
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.7e-21 107.8 178 46.1
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 1.2e-16 91.7 415 30.4
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 1.6e-11 74.7 48 81.2
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.0e-07 62.0 65 50.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 1.0e-07 62.0 197 28.9
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 2.3e-07 60.8 105 41.0
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 3.1e-07 60.5 233 30.0
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 6.8e-07 59.3 67 47.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 6.8e-07 59.3 59 47.5
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 8.9e-07 58.9 139 33.1
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.2e-06 58.5 136 31.6
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.5e-06 58.2 136 31.6
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 1.5e-06 58.2 60 46.7
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 2.0e-06 57.8 83 39.8
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 4.4e-06 56.6 67 41.8
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 5.8e-06 56.2 81 39.5
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 7.5e-06 55.8 60 45.0


User provided reference genes

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