Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1195300 Malus domestica HOM05D003553 ORTHO05D005072 5.7e-40 167.2 86 100.0
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 4.5e-29 131.0 86 81.4
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 1.1e-27 126.3 86 77.9
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.0e-25 119.8 84 73.8
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 1.8e-25 119.0 84 73.8
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 6.7e-25 117.1 81 74.1
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 8.8e-25 116.7 84 72.6
TPR.G5572 Trifolium pratense HOM05D003553 ORTHO05D005072 8.8e-25 116.7 84 70.2
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 1.5e-24 115.9 83 71.1
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 1.5e-24 115.9 80 73.8
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 2.0e-24 115.5 84 70.2
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 3.3e-24 114.8 78 76.9
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 3.3e-24 114.8 78 76.9
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 3.3e-24 114.8 80 73.8
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 4.4e-24 114.4 85 70.6
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 5.7e-24 114.0 84 69.0
FAN04G2395 Fragaria x ananassa HOM05D003553 ORTHO05D005072 7.5e-24 113.6 80 75.0
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 7.5e-24 113.6 80 75.0
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 9.7e-24 113.2 84 70.2
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 9.7e-24 113.2 84 70.2
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 9.7e-24 113.2 80 72.5
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 9.7e-24 113.2 79 74.7
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 1.3e-23 112.8 80 72.5
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 1.7e-23 112.5 80 71.2
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 2.2e-23 112.1 84 70.2
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 2.8e-23 111.7 84 69.0
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 4.8e-23 110.9 84 67.9
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 4.8e-23 110.9 85 70.6
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 4.8e-23 110.9 81 70.4
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 4.8e-23 110.9 81 70.4
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 4.8e-23 110.9 81 70.4
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 4.8e-23 110.9 81 70.4
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 6.3e-23 110.5 80 71.2
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 6.3e-23 110.5 81 70.4
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 6.3e-23 110.5 81 69.1
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 8.3e-23 110.2 80 70.0
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 1.1e-22 109.8 80 68.8
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 1.1e-22 109.8 81 69.1
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.4e-22 109.4 84 70.2
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 1.4e-22 109.4 81 69.1
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 1.8e-22 109.0 81 69.1
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 1.8e-22 109.0 79 70.9
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 1.8e-22 109.0 84 69.0
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 5.3e-22 107.5 81 65.4
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 5.3e-22 107.5 80 68.8
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 5.3e-22 107.5 80 68.8
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 7.0e-22 107.1 81 69.1
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 9.1e-22 106.7 77 68.8
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 1.6e-21 105.9 81 65.4
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 1.6e-21 105.9 80 67.5
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 2.0e-21 105.5 80 67.5
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 2.0e-21 105.5 81 67.9
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.0e-21 105.5 80 71.2
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.7e-21 105.1 84 67.9
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 4.5e-21 104.4 80 65.0
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 5.9e-21 104.0 75 69.3
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 5.9e-21 104.0 82 65.9
MELO3C029757.2 Cucumis melo HOM05D003553 ORTHO05D005072 5.9e-21 104.0 82 65.9
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 7.7e-21 103.6 79 67.1
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 1.0e-20 103.2 80 70.0
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 1.3e-20 102.8 82 68.3
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 1.3e-20 102.8 70 77.1
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 2.2e-20 102.1 75 70.7
TAR622G0338 Trochodendron aralioides HOM05D003553 ORTHO05D005072 2.2e-20 102.1 78 64.1
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 3.8e-20 101.3 82 64.6
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 6.5e-20 100.5 73 69.9
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.1e-19 99.8 77 64.9
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 1.5e-19 99.4 82 64.6
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.9e-19 99.0 82 63.4
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 1.9e-19 99.0 79 67.1
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 2.5e-19 98.6 82 63.4
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 2.5e-19 98.6 80 63.8
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 4.2e-19 97.8 82 63.4
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 4.2e-19 97.8 74 67.6
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 5.5e-19 97.4 82 62.2
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 7.2e-19 97.1 70 70.0
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 9.4e-19 96.7 82 62.2
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 1.2e-18 96.3 74 66.2
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 1.6e-18 95.9 82 61.0
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 1.6e-18 95.9 82 61.0
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 2.7e-18 95.1 80 60.0
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 3.6e-18 94.7 70 70.0
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 4.7e-18 94.4 76 63.2
BcaC08g46921 Brassica carinata HOM05D003553 ORTHO05D005072 6.1e-18 94.0 78 64.1
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 6.1e-18 94.0 71 69.0
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 6.1e-18 94.0 78 64.1
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 8.0e-18 93.6 82 61.0
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 64.1
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 64.1
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 8.0e-18 93.6 78 62.8
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 8.0e-18 93.6 74 66.2
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 1.0e-17 93.2 81 59.3
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.0e-17 93.2 85 57.6
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 1.0e-17 93.2 85 57.6
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 1.0e-17 93.2 78 62.8
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 1.0e-17 93.2 78 62.8
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 1.0e-17 93.2 78 64.1
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 1.0e-17 93.2 78 62.8
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 2.3e-17 92.0 76 63.2
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 2.3e-17 92.0 82 58.5
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 2.3e-17 92.0 76 63.2
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 2.3e-17 92.0 76 63.2
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 2.3e-17 92.0 76 63.2
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 2.3e-17 92.0 82 58.5
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 2.3e-17 92.0 76 63.2
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 5.2e-17 90.9 70 65.7
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 6.8e-17 90.5 70 64.3
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 1.2e-16 89.7 84 59.5
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 1.5e-16 89.4 75 62.7
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 2.6e-16 88.6 70 64.3
HPP92_007666 Vanilla planifolia HOM05D003553 ORTHO05D005072 4.4e-16 87.8 80 55.0
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 5.7e-16 87.4 70 64.3
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 5.7e-16 87.4 70 64.3
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 5.7e-16 87.4 70 64.3
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 1.3e-15 86.3 78 55.1
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.7e-15 85.9 70 61.4
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 3.7e-15 84.7 70 62.9
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 8.3e-15 83.6 71 63.4
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 2.4e-14 82.0 70 58.6
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 7.0e-14 80.5 76 55.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 2.0e-13 79.0 78 52.6
Sc23g0004640 Simmondsia chinensis HOM05D003553 ORTHO05D005072 1.0e-12 76.6 70 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.9e-12 75.1 107 43.9
BcaC07g41285 Brassica carinata HOM05D003553 ORTHO05D005072 2.9e-12 75.1 67 58.2
C08p42930 Brassica napus HOM05D003553 ORTHO05D005072 2.9e-12 75.1 67 58.2
BolC8t51848H Brassica oleracea HOM05D003553 ORTHO05D005072 3.8e-12 74.7 67 58.2
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 5.0e-12 74.3 70 57.1
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 7.2e-11 70.5 59 62.7
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 1.4e-09 66.2 121 36.4
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 6.8e-09 63.9 129 35.7
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 4.9e-07 57.8 27 96.3
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 6.3e-07 57.4 34 76.5
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 1.8e-06 55.8 75 41.3
A09p59630 Brassica napus HOM05D003553 ORTHO05D005072 5.4e-06 54.3 59 52.5


User provided reference genes

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