Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 2.7e-80 302.4 202 100.0
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 2.4e-73 279.3 202 86.6
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 3.9e-55 218.8 206 70.9
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 7.3e-54 214.5 207 70.5
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.7e-53 211.8 208 71.6
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 1.4e-52 210.3 209 70.8
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 4.0e-52 208.8 209 70.3
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.4e-50 201.4 209 68.9
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 1.6e-48 196.8 203 67.0
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 2.7e-48 196.1 181 72.9
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 6.0e-48 194.9 196 68.9
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 7.8e-48 194.5 203 70.0
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 7.8e-48 194.5 203 70.0
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 3.9e-47 192.2 196 68.4
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 5.1e-47 191.8 203 67.0
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 6.6e-47 191.4 203 69.0
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 8.6e-47 191.0 203 67.0
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 8.6e-47 191.0 204 68.1
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.5e-46 190.3 205 66.3
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 1.5e-46 190.3 207 67.1
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 3.3e-46 189.1 197 70.1
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 4.3e-46 188.7 204 66.7
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 5.6e-46 188.3 166 74.7
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 9.6e-46 187.6 203 66.0
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 2.1e-45 186.4 200 67.0
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 2.8e-45 186.0 206 67.5
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 2.8e-45 186.0 200 66.5
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 2.8e-45 186.0 200 66.5
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 2.8e-45 186.0 196 66.3
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 3.6e-45 185.7 207 66.2
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 1.8e-44 183.3 203 66.5
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 3.1e-44 182.6 196 65.8
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 3.1e-44 182.6 202 66.3
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 4.0e-44 182.2 202 64.9
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 5.2e-44 181.8 207 65.7
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 8.9e-44 181.0 197 65.5
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 1.2e-43 180.6 182 67.6
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 1.5e-43 180.3 204 66.2
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 4.4e-43 178.7 202 63.9
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 9.9e-43 177.6 204 64.7
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 9.9e-43 177.6 202 63.4
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.2e-42 176.4 202 63.4
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 2.2e-42 176.4 203 69.5
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 2.9e-42 176.0 202 64.9
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 2.9e-42 176.0 200 61.5
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 2.9e-42 176.0 205 62.0
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 3.8e-42 175.6 207 64.7
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 4.9e-42 175.3 204 62.7
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 4.9e-42 175.3 171 70.8
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 6.4e-42 174.9 193 65.8
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 8.4e-42 174.5 203 66.0
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 1.1e-41 174.1 202 62.4
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 1.1e-41 174.1 202 62.9
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 1.4e-41 173.7 207 62.8
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 1.4e-41 173.7 202 62.4
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 1.4e-41 173.7 202 61.4
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 1.9e-41 173.3 202 62.4
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 2.4e-41 172.9 147 78.9
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 2.4e-41 172.9 154 74.0
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 4.2e-41 172.2 205 63.4
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 4.2e-41 172.2 205 63.4
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 5.4e-41 171.8 151 76.2
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 5.4e-41 171.8 205 64.4
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 5.4e-41 171.8 205 64.4
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 5.4e-41 171.8 201 61.7
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 1.2e-40 170.6 203 62.6
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 1.6e-40 170.2 204 63.7
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.6e-40 170.2 158 72.2
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 2.1e-40 169.9 205 63.4
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 2.1e-40 169.9 202 61.4
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 2.1e-40 169.9 206 61.7
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 2.1e-40 169.9 205 63.9
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.7e-40 169.5 208 66.3
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 2.7e-40 169.5 199 62.8
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 3.5e-40 169.1 207 60.9
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 1.0e-39 167.5 201 61.7
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 1.3e-39 167.2 204 62.3
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.3e-39 167.2 203 61.6
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 1.7e-39 166.8 200 62.5
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.7e-39 166.8 203 62.6
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 2.3e-39 166.4 200 67.0
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 3.0e-39 166.0 200 62.5
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 3.0e-39 166.0 202 62.4
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.0e-39 166.0 201 61.7
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 8.7e-39 164.5 148 75.0
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 1.1e-38 164.1 207 59.9
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 1.5e-38 163.7 149 73.8
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 2.5e-38 162.9 150 73.3
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 2.5e-38 162.9 149 75.2
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 2.5e-38 162.9 169 69.2
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 7.3e-38 161.4 184 61.4
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 7.3e-38 161.4 201 58.7
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.3e-37 160.6 169 64.5
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 1.6e-37 160.2 202 57.4
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 2.8e-37 159.5 198 59.6
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 6.2e-37 158.3 205 60.5
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 6.2e-37 158.3 161 72.7
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 1.4e-36 157.1 202 58.9
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 1.2e-35 154.1 169 62.7
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-35 153.7 173 60.7
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 1.5e-35 153.7 173 60.7
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 2.0e-35 153.3 180 61.1
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 5.4e-33 145.2 209 55.0
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 4.6e-32 142.1 174 58.0
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 3.0e-31 139.4 132 72.0
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 5.1e-31 138.7 204 53.9
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 3.1e-28 129.4 203 50.7
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 5.1e-23 112.1 199 47.7
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 4.3e-22 109.0 112 55.4
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 1.5e-19 100.5 206 45.6
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 4.9e-18 95.5 113 62.8
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 5.5e-17 92.0 102 56.9
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 5.5e-17 92.0 163 47.9
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 2.1e-16 90.1 123 49.6
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 2.7e-16 89.7 150 50.0
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 6.0e-16 88.6 171 45.6
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 7.4e-14 81.6 140 51.4
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 8.2e-13 78.2 110 51.8
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 1.2e-11 74.3 162 43.2
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 3.4e-11 72.8 118 49.2
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 2.7e-08 63.2 199 43.2


User provided reference genes

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