Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1193300 Malus domestica HOM05D003870 ORTHO05D004567 1.6e-56 222.6 117 100.0
MD10G1187500 Malus domestica HOM05D003870 ORTHO05D004567 4.5e-40 167.9 110 85.5
MD17G1191200 Malus domestica HOM05D003870 ORTHO05D004567 3.0e-23 112.1 74 81.1
MD09G1209500 Malus domestica HOM05D003870 ORTHO05D004567 8.6e-23 110.5 74 78.4
RcHm_v2.0_Chr2g0138931 Rosa chinensis HOM05D003870 ORTHO05D004567 4.7e-21 104.8 74 73.0
FAN02G0928 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.2e-21 104.4 74 71.6
FAN05G2130 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.2e-21 104.4 74 71.6
FAN14G2389 Fragaria x ananassa HOM05D003870 ORTHO05D004567 6.2e-21 104.4 74 71.6
Prupe.3G067400 Prunus persica HOM05D003870 ORTHO05D004567 6.2e-21 104.4 74 74.3
FAN09G1730 Fragaria x ananassa HOM05D003870 ORTHO05D004567 3.1e-20 102.1 74 70.3
Cfa002093 Carpinus fangiana HOM05D003870 ORTHO05D004567 4.0e-20 101.7 74 73.0
Haze_16364 Corylus avellana HOM05D003870 ORTHO05D004567 4.0e-20 101.7 74 73.0
Phvul.010G148800 Phaseolus vulgaris HOM05D003870 ORTHO05D004567 4.0e-20 101.7 74 71.6
VMungo0331G0764 Vigna mungo HOM05D003870 ORTHO05D004567 4.0e-20 101.7 74 71.6
FvH4_6g31740 Fragaria vesca HOM05D003870 ORTHO05D004567 5.2e-20 101.3 74 70.3
CANSAT56G1465 Cannabis sativa HOM05D003870 ORTHO05D004567 6.8e-20 100.9 74 71.6
CiPaw.01G235900 Carya illinoinensis HOM05D003870 ORTHO05D004567 1.5e-19 99.8 74 71.6
Manes.11G038100 Manihot esculenta HOM05D003870 ORTHO05D004567 2.0e-19 99.4 74 70.3
QL05p021780 Quercus lobata HOM05D003870 ORTHO05D004567 2.6e-19 99.0 74 68.9
Sed0024359 Sechium edule HOM05D003870 ORTHO05D004567 5.8e-19 97.8 74 67.6
Glyma.07G019700 Glycine max HOM05D003870 ORTHO05D004567 9.8e-19 97.1 74 67.6
Manes.04G129900 Manihot esculenta HOM05D003870 ORTHO05D004567 9.8e-19 97.1 74 68.9
PGR102G1204 Punica granatum HOM05D003870 ORTHO05D004567 9.8e-19 97.1 74 68.9
Glyma.08G204800 Glycine max HOM05D003870 ORTHO05D004567 1.3e-18 96.7 74 66.2
Potri.003G052500 Populus trichocarpa HOM05D003870 ORTHO05D004567 2.2e-18 95.9 74 68.9
Ciclev10026722m.g Citrus clementina HOM05D003870 ORTHO05D004567 2.9e-18 95.5 74 67.6
COL.COLO4_30434 Corchorus olitorius HOM05D003870 ORTHO05D004567 3.7e-18 95.1 74 67.6
Lj3g0012525 Lotus japonicus HOM05D003870 ORTHO05D004567 3.7e-18 95.1 78 65.4
Psat5g298080 Pisum sativum HOM05D003870 ORTHO05D004567 6.4e-18 94.4 76 64.5
Aqoxy7G01609 Aquilegia oxysepala HOM05D003870 ORTHO05D004567 8.3e-18 94.0 74 67.6
TWI12G1021 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 8.3e-18 94.0 74 67.6
TAR383G0495 Trochodendron aralioides HOM05D003870 ORTHO05D004567 8.3e-18 94.0 74 67.6
Dinv38024 Davidia involucrata HOM05D003870 ORTHO05D004567 1.1e-17 93.6 74 66.2
TAR626G1423 Trochodendron aralioides HOM05D003870 ORTHO05D004567 1.1e-17 93.6 74 67.6
Migut.I00942 Erythranthe guttata HOM05D003870 ORTHO05D004567 1.4e-17 93.2 74 63.5
CSS0004601 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.9e-17 92.8 74 66.2
CSS0022866 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 1.9e-17 92.8 74 66.2
Sabra03G0026800 Salix brachista HOM05D003870 ORTHO05D004567 1.9e-17 92.8 74 66.2
Thecc.06G092200 Theobroma cacao HOM05D003870 ORTHO05D004567 1.9e-17 92.8 68 70.6
Eucgr.J02958 Eucalyptus grandis HOM05D003870 ORTHO05D004567 2.4e-17 92.4 75 66.7
Nn2g11696 Nelumbo nucifera HOM05D003870 ORTHO05D004567 2.4e-17 92.4 74 66.2
THA.LOC104810527 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.4e-17 92.4 76 67.1
Cpa.g.sc1182.1 Carica papaya HOM05D003870 ORTHO05D004567 3.2e-17 92.0 74 67.6
CiPaw.02G148900 Carya illinoinensis HOM05D003870 ORTHO05D004567 3.2e-17 92.0 74 64.9
Eucgr.F03038 Eucalyptus grandis HOM05D003870 ORTHO05D004567 3.2e-17 92.0 74 64.9
Hma1.2p1_1195F.1_g265780 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 3.2e-17 92.0 75 64.0
Hma1.2p1_3147F.1_g333153 Hydrangea macrophylla HOM05D003870 ORTHO05D004567 3.2e-17 92.0 75 64.0
Aa31LG10G2680 Aethionema arabicum HOM05D003870 ORTHO05D004567 4.1e-17 91.7 63 71.4
arahy.Tifrunner.gnm1.ann1.71HCYD Arachis hypogaea HOM05D003870 ORTHO05D004567 4.1e-17 91.7 74 63.5
arahy.Tifrunner.gnm1.ann1.YBSA05 Arachis hypogaea HOM05D003870 ORTHO05D004567 4.1e-17 91.7 74 63.5
CSS0035581 Camellia sinensis var. sinensis HOM05D003870 ORTHO05D004567 4.1e-17 91.7 74 63.5
Dinv30483 Davidia involucrata HOM05D003870 ORTHO05D004567 4.1e-17 91.7 74 64.9
Gohir.A05G131700 Gossypium hirsutum HOM05D003870 ORTHO05D004567 4.1e-17 91.7 74 64.9
A06p01960 Brassica napus HOM05D003870 ORTHO05D004567 5.4e-17 91.3 66 68.2
BraA06t23412Z Brassica rapa HOM05D003870 ORTHO05D004567 5.4e-17 91.3 66 68.2
MELO3C012971.2 Cucumis melo HOM05D003870 ORTHO05D004567 5.4e-17 91.3 74 63.5
Duzib235G0817 Durio zibethinus HOM05D003870 ORTHO05D004567 5.4e-17 91.3 74 64.9
Nn3g18073 Nelumbo nucifera HOM05D003870 ORTHO05D004567 5.4e-17 91.3 102 52.0
VMungo1080G1700 Vigna mungo HOM05D003870 ORTHO05D004567 5.4e-17 91.3 74 63.5
Gohir.D05G131200 Gossypium hirsutum HOM05D003870 ORTHO05D004567 7.0e-17 90.9 74 63.5
Gorai.009G134900 Gossypium raimondii HOM05D003870 ORTHO05D004567 7.0e-17 90.9 74 63.5
AT1G52230 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 9.2e-17 90.5 65 69.2
BcaB04g18888 Brassica carinata HOM05D003870 ORTHO05D004567 9.2e-17 90.5 64 73.4
Lsat_1_v5_gn_1_35241 Lactuca sativa HOM05D003870 ORTHO05D004567 9.2e-17 90.5 65 69.2
Rhsim12G0200100 Rhododendron simsii HOM05D003870 ORTHO05D004567 1.2e-16 90.1 68 69.1
vmacro16969 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 1.2e-16 90.1 68 67.6
AUR62011659 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.6e-16 89.7 74 62.2
PSO782G2129 Papaver somniferum HOM05D003870 ORTHO05D004567 1.6e-16 89.7 75 65.3
PSO832G3918 Papaver somniferum HOM05D003870 ORTHO05D004567 1.6e-16 89.7 75 65.3
TWI75G1362 Tripterygium wilfordii HOM05D003870 ORTHO05D004567 1.6e-16 89.7 75 65.3
THA.LOC104817982 Tarenaya hassleriana HOM05D003870 ORTHO05D004567 2.1e-16 89.4 65 69.2
BcaB06g25707 Brassica carinata HOM05D003870 ORTHO05D004567 2.7e-16 89.0 64 71.9
BcaC01g01311 Brassica carinata HOM05D003870 ORTHO05D004567 2.7e-16 89.0 65 69.2
BcaC01g01313 Brassica carinata HOM05D003870 ORTHO05D004567 2.7e-16 89.0 65 69.2
A01p37960 Brassica napus HOM05D003870 ORTHO05D004567 2.7e-16 89.0 65 70.8
A05p33360 Brassica napus HOM05D003870 ORTHO05D004567 2.7e-16 89.0 64 71.9
BraA01t03856Z Brassica rapa HOM05D003870 ORTHO05D004567 2.7e-16 89.0 65 70.8
BraA05t22161Z Brassica rapa HOM05D003870 ORTHO05D004567 2.7e-16 89.0 64 71.9
Migut.D01017 Erythranthe guttata HOM05D003870 ORTHO05D004567 2.7e-16 89.0 67 67.2
Sed0005638 Sechium edule HOM05D003870 ORTHO05D004567 2.7e-16 89.0 74 60.8
TPR.G37200 Trifolium pratense HOM05D003870 ORTHO05D004567 2.7e-16 89.0 70 67.1
A08p02270 Brassica napus HOM05D003870 ORTHO05D004567 3.5e-16 88.6 65 69.2
C06p07460 Brassica napus HOM05D003870 ORTHO05D004567 3.5e-16 88.6 65 67.7
BolC6t35835H Brassica oleracea HOM05D003870 ORTHO05D004567 3.5e-16 88.6 65 67.7
ClCG07G013150 Citrullus lanatus HOM05D003870 ORTHO05D004567 3.5e-16 88.6 74 60.8
CsaV3_3G025000 Cucumis sativus L. HOM05D003870 ORTHO05D004567 3.5e-16 88.6 74 60.8
DCAR_023061 Daucus carota HOM05D003870 ORTHO05D004567 3.5e-16 88.6 74 63.5
Duzib160G0587 Durio zibethinus HOM05D003870 ORTHO05D004567 3.5e-16 88.6 74 64.9
Sp3g14500 Schrenkiella parvula HOM05D003870 ORTHO05D004567 3.5e-16 88.6 65 69.2
BraA08t32272Z Brassica rapa HOM05D003870 ORTHO05D004567 4.6e-16 88.2 65 69.2
Rhsim08G0223300 Rhododendron simsii HOM05D003870 ORTHO05D004567 4.6e-16 88.2 75 64.0
C03p90500 Brassica napus HOM05D003870 ORTHO05D004567 6.0e-16 87.8 65 67.7
BolC3t21374H Brassica oleracea HOM05D003870 ORTHO05D004567 6.0e-16 87.8 65 67.7
Thhalv10021715m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 6.0e-16 87.8 65 70.8
HanXRQChr10g0313451 Helianthus annuus HOM05D003870 ORTHO05D004567 6.0e-16 87.8 63 68.3
Lsat_1_v5_gn_5_130901 Lactuca sativa HOM05D003870 ORTHO05D004567 6.0e-16 87.8 63 69.8
Sp1g38770 Schrenkiella parvula HOM05D003870 ORTHO05D004567 6.0e-16 87.8 65 67.7
GSVIVG01017071001 Vitis vinifera HOM05D003870 ORTHO05D004567 6.0e-16 87.8 74 62.2
Lalb_Chr14g0373231 Lupinus albus HOM05D003870 ORTHO05D004567 7.8e-16 87.4 68 70.6
Medtr2g101820 Medicago truncatula HOM05D003870 ORTHO05D004567 7.8e-16 87.4 70 64.3
Ah.01g021620 Amaranthus hybridus HOM05D003870 ORTHO05D004567 1.0e-15 87.0 74 58.1
BcaB04g17164 Brassica carinata HOM05D003870 ORTHO05D004567 1.0e-15 87.0 82 59.8
Carub.0001s4120 Capsella rubella HOM05D003870 ORTHO05D004567 1.0e-15 87.0 65 66.2
CARHR091300 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.0e-15 87.0 65 69.2
MBI01_g07179_MAGBIO Magnolia biondii HOM05D003870 ORTHO05D004567 1.0e-15 87.0 74 60.8
BcaC05g28907 Brassica carinata HOM05D003870 ORTHO05D004567 1.3e-15 86.7 64 70.3
C05p50360 Brassica napus HOM05D003870 ORTHO05D004567 1.3e-15 86.7 64 70.3
BolC5t33784H Brassica oleracea HOM05D003870 ORTHO05D004567 1.3e-15 86.7 64 70.3
CARHR042360 Cardamine hirsuta HOM05D003870 ORTHO05D004567 1.3e-15 86.7 64 67.2
Nitab4.5_0002859g0140 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.7e-15 86.3 78 60.3
Oeu029644.1 Olea europaea HOM05D003870 ORTHO05D004567 1.7e-15 86.3 74 59.5
AL3G28820 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 2.3e-15 85.9 65 67.7
TAR636G2531 Trochodendron aralioides HOM05D003870 ORTHO05D004567 2.3e-15 85.9 74 60.8
Thhalv10011814m.g Eutrema salsugineum HOM05D003870 ORTHO05D004567 3.0e-15 85.5 65 66.2
Duzib192G0641 Durio zibethinus HOM05D003870 ORTHO05D004567 6.6e-15 84.3 74 62.2
Lalb_Chr25g0279971 Lupinus albus HOM05D003870 ORTHO05D004567 6.6e-15 84.3 69 62.3
PGSC0003DMG400002626 Solanum tuberosum HOM05D003870 ORTHO05D004567 6.6e-15 84.3 78 60.3
CAN.G1152.5 Capsicum annuum HOM05D003870 ORTHO05D004567 8.6e-15 84.0 64 65.6
ECA234G4669 Erigeron canadensis HOM05D003870 ORTHO05D004567 8.6e-15 84.0 63 68.3
AT3G16140 Arabidopsis thaliana HOM05D003870 ORTHO05D004567 1.1e-14 83.6 65 66.2
HanXRQChr12g0360771 Helianthus annuus HOM05D003870 ORTHO05D004567 1.1e-14 83.6 63 66.7
EL10Ac9g22029 Beta vulgaris HOM05D003870 ORTHO05D004567 1.5e-14 83.2 74 58.1
CAN.G438.27 Capsicum annuum HOM05D003870 ORTHO05D004567 1.5e-14 83.2 78 57.7
Glyma.13G357300 Glycine max HOM05D003870 ORTHO05D004567 1.5e-14 83.2 55 76.4
Glyma.15G016300 Glycine max HOM05D003870 ORTHO05D004567 1.5e-14 83.2 55 76.4
Actinidia21679 Actinidia chinensis HOM05D003870 ORTHO05D004567 1.9e-14 82.8 68 61.8
MSTRG.11054 Avicennia marina HOM05D003870 ORTHO05D004567 1.9e-14 82.8 67 61.2
ECA247G2331 Erigeron canadensis HOM05D003870 ORTHO05D004567 1.9e-14 82.8 63 65.1
MD02G1178900 Malus domestica HOM05D003870 ORTHO05D004567 1.9e-14 82.8 51 86.3
Nitab4.5_0001315g0130 Nicotiana tabacum HOM05D003870 ORTHO05D004567 1.9e-14 82.8 63 65.1
Nitab4.5_0000351g0060 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.5e-14 82.4 78 59.0
Solyc06g066640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 2.5e-14 82.4 65 63.1
SGA_v2.0_scaffold5G02558 Striga asiatica HOM05D003870 ORTHO05D004567 2.5e-14 82.4 74 56.8
Carub.0003s1588 Capsella rubella HOM05D003870 ORTHO05D004567 3.3e-14 82.0 65 64.6
Nitab4.5_0003418g0030 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.3e-14 82.0 63 65.1
Nitab4.5_0018837g0020 Nicotiana tabacum HOM05D003870 ORTHO05D004567 3.3e-14 82.0 63 66.7
Sopen06g024910 Solanum pennellii HOM05D003870 ORTHO05D004567 3.3e-14 82.0 65 63.1
Oeu024071.1 Olea europaea HOM05D003870 ORTHO05D004567 4.3e-14 81.6 68 63.2
unitig_0.g2124 Utricularia gibba HOM05D003870 ORTHO05D004567 4.3e-14 81.6 73 57.5
Cc04_g03050 Coffea canephora HOM05D003870 ORTHO05D004567 5.6e-14 81.3 74 56.8
PGSC0003DMG400016504 Solanum tuberosum HOM05D003870 ORTHO05D004567 5.6e-14 81.3 78 56.4
Solyc03g120640.3 Solanum lycopersicum HOM05D003870 ORTHO05D004567 7.3e-14 80.9 78 59.0
Solyc12g044280.2 Solanum lycopersicum HOM05D003870 ORTHO05D004567 9.5e-14 80.5 62 66.1
Sopen12g022520 Solanum pennellii HOM05D003870 ORTHO05D004567 9.5e-14 80.5 62 66.1
Peaxi162Scf00015g00032 Petunia axillaris HOM05D003870 ORTHO05D004567 1.6e-13 79.7 63 63.5
Zm00001eb295610 Zea mays HOM05D003870 ORTHO05D004567 1.6e-13 79.7 72 61.1
vmacro18888 Vaccinium macrocarpon HOM05D003870 ORTHO05D004567 2.1e-13 79.3 75 61.3
Os05g0560000 Oryza sativa ssp. japonica HOM05D003870 ORTHO05D004567 2.8e-13 79.0 69 56.5
Peaxi162Scf00034g00513 Petunia axillaris HOM05D003870 ORTHO05D004567 2.8e-13 79.0 78 59.0
PGSC0003DMG400007571 Solanum tuberosum HOM05D003870 ORTHO05D004567 2.8e-13 79.0 63 66.7
CDE02G4568 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.1e-12 77.0 71 56.3
CDE04G3706 Ceratophyllum demersum HOM05D003870 ORTHO05D004567 1.4e-12 76.6 71 56.3
ATR0315G019 Amborella trichopoda HOM05D003870 ORTHO05D004567 3.1e-12 75.5 65 61.5
HPP92_021482 Vanilla planifolia HOM05D003870 ORTHO05D004567 1.5e-11 73.2 57 63.2
Sc15g0001350 Simmondsia chinensis HOM05D003870 ORTHO05D004567 2.6e-11 72.4 68 58.8
Hund00643 Selenicereus undatus HOM05D003870 ORTHO05D004567 3.4e-11 72.0 78 52.6
SGA_v2.0_scaffold69G23361 Striga asiatica HOM05D003870 ORTHO05D004567 3.4e-11 72.0 75 50.7
Pp3c15_19390 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.4e-09 66.6 63 50.8
Pp3c9_19520 Physcomitrium patens HOM05D003870 ORTHO05D004567 1.4e-09 66.6 63 52.4
Actinidia32731 Actinidia chinensis HOM05D003870 ORTHO05D004567 2.4e-09 65.9 60 56.7
BcaC08g43379 Brassica carinata HOM05D003870 ORTHO05D004567 5.4e-09 64.7 34 85.3
AL1G60400 Arabidopsis lyrata HOM05D003870 ORTHO05D004567 1.2e-08 63.5 34 82.4
Sopen00g011820 Solanum pennellii HOM05D003870 ORTHO05D004567 1.2e-08 63.5 34 82.4
Nitab4.5_0001968g0090 Nicotiana tabacum HOM05D003870 ORTHO05D004567 2.7e-08 62.4 77 48.1
SEGI_14279 Sequoiadendron giganteum HOM05D003870 ORTHO05D004567 3.0e-07 58.9 75 44.0
Mapoly0009s0008 Marchantia polymorpha HOM05D003870 ORTHO05D004567 5.1e-07 58.2 66 50.0
AUR62016482 Chenopodium quinoa HOM05D003870 ORTHO05D004567 1.1e-06 57.0 73 45.2
CBR_g31512 Chara braunii HOM05D003870 ORTHO05D004567 7.3e-06 54.3 63 46.0


User provided reference genes

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