Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1656.0 856 100.0
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1602.0 846 97.6
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1588.5 846 96.2
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1540.0 846 92.9
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1520.8 846 91.7
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1516.9 846 91.5
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1516.5 846 91.5
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1515.0 846 91.5
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1511.1 846 90.5
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1504.2 846 89.7
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1502.6 846 90.3
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1502.3 839 91.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1499.6 847 90.2
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1496.5 846 89.5
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1486.1 837 89.7
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1486.1 845 90.1
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1485.7 847 89.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1484.5 839 90.5
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1484.2 848 89.6
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1484.2 846 89.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1481.8 848 89.2
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1481.5 846 89.2
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1480.7 849 89.4
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1479.9 849 89.0
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1479.5 847 88.8
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1478.0 846 89.2
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1474.9 837 89.5
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1472.6 838 89.3
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1472.6 838 89.3
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1468.0 846 88.1
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1468.0 848 88.0
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1467.6 849 88.0
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1467.2 847 87.5
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1465.7 847 88.2
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1464.1 847 88.0
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1463.0 838 88.8
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1461.8 847 87.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1461.0 846 87.7
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1459.9 847 87.6
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1458.4 846 87.6
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1458.0 838 88.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1458.0 848 87.3
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1457.6 846 87.5
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1456.0 846 87.5
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1454.9 846 87.6
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1454.5 846 87.4
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1454.1 838 87.8
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1454.1 847 86.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1453.3 837 89.8
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1452.6 851 86.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1449.9 849 86.8
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1449.5 848 86.7
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1449.1 848 86.9
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1448.7 847 86.8
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1447.6 849 86.6
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1447.6 846 86.5
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1446.8 851 86.1
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1446.4 849 87.3
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1446.4 847 87.1
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1445.3 848 86.7
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 847 86.4
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1443.3 849 86.1
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1443.3 848 86.8
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1443.3 847 85.1
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 848 86.6
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 842 86.6
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1441.8 849 86.0
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1440.2 847 86.5
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1440.2 847 85.6
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1440.2 847 86.2
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1439.5 847 85.5
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1439.1 885 84.0
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1438.3 851 85.7
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1437.9 849 86.0
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1437.6 860 85.0
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1433.7 848 88.1
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1433.3 848 85.3
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1430.2 848 85.8
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1430.2 848 85.8
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1430.2 849 85.6
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1429.8 848 85.7
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1429.8 848 85.7
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1429.8 848 85.7
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1429.1 847 85.8
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1427.9 846 85.6
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1425.2 848 85.3
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1414.1 848 85.4
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1413.3 846 85.7
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1412.9 893 82.0
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1398.3 847 84.7
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1378.6 799 87.5
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1377.5 856 84.0
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1368.6 853 83.4
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1362.1 850 82.5
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1354.0 862 80.9
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1350.5 848 80.2
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1334.7 848 79.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1318.9 846 78.6
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1303.1 851 77.7
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1294.3 797 81.6
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1162.5 851 69.0
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1161.0 838 70.0
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1159.8 838 69.2
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1154.0 677 86.0
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1146.7 695 85.3
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1137.9 842 68.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1088.2 840 66.1
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1077.0 866 63.5
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1077.0 841 65.5
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 5.9e-312 1073.5 623 87.0
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.2e-294 1016.5 576 91.1
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.9e-284 982.6 545 92.3
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 9.0e-279 963.8 599 84.0
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 4.1e-247 858.6 868 50.9
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 4.7e-235 818.5 652 69.2
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 7.5e-233 811.2 614 65.6
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 5.6e-220 768.5 464 81.5
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 8.9e-218 761.1 461 81.1
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 5.4e-183 645.6 485 70.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 2.6e-161 573.5 342 81.3
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 6.5e-152 542.3 357 80.7
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.4e-132 475.7 273 86.1
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.7e-123 448.0 273 80.2
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 1.2e-113 415.2 377 56.5
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.2e-89 335.5 195 86.2
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 6.2e-70 270.0 158 84.8
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.4e-69 268.1 163 79.1
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 5.4e-66 256.9 168 83.3
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 7.9e-49 199.9 143 75.5
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.6e-44 184.9 116 86.2
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.2e-36 159.5 103 84.5
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 5.9e-36 157.1 109 79.8
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 3.8e-35 154.5 87 86.2
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 1.8e-32 145.6 96 81.2
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.5e-19 100.5 132 43.9
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 8.5e-19 100.1 110 50.9
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.4e-18 96.7 84 67.9
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 7.4e-15 87.0 51 84.3
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.8e-14 85.1 51 80.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 3.7e-14 84.7 51 82.4
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 8.3e-06 57.0 57 57.9


User provided reference genes

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