Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 8.4e-130 467.6 356 100.0
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 2.9e-106 389.4 359 79.7
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 2.1e-96 356.7 372 79.3
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 9.8e-86 321.2 354 74.0
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 1.9e-81 307.0 351 73.5
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.2e-81 306.2 351 73.2
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.2e-80 304.3 351 69.8
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 6.1e-80 302.0 354 68.4
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 2.6e-78 296.6 359 68.5
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 8.9e-71 271.6 353 65.2
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 9.8e-70 268.1 351 64.7
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 1.3e-69 267.7 351 64.4
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 4.1e-68 262.7 351 48.7
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 5.4e-68 262.3 362 61.0
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 1.2e-67 261.2 364 65.4
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 5.9e-67 258.8 369 67.5
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.3e-66 257.7 355 58.6
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 1.3e-66 257.7 362 62.2
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 1.3e-66 257.7 360 59.7
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 1.3e-66 257.7 353 57.2
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 1.7e-66 257.3 353 59.8
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 3.0e-66 256.5 356 64.6
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 1.9e-65 253.8 383 69.5
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 2.8e-64 250.0 368 63.6
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 8.0e-64 248.4 360 59.4
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 1.0e-63 248.1 362 66.0
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 1.2e-62 244.6 352 66.2
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.5e-62 244.2 351 55.3
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 2.0e-62 243.8 360 60.8
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 2.6e-62 243.4 358 63.1
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 5.8e-62 242.3 355 59.7
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 6.4e-61 238.8 352 69.6
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.1e-60 238.0 351 46.2
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 4.6e-59 232.6 352 60.8
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 6.0e-59 232.3 363 52.1
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 1.7e-58 230.7 351 50.4
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.3e-58 230.3 360 53.1
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 5.0e-58 229.2 360 57.8
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 8.6e-58 228.4 363 57.9
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 1.1e-57 228.0 352 61.9
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 2.5e-57 226.9 353 49.0
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 4.3e-57 226.1 353 64.6
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 7.3e-57 225.3 371 61.5
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 7.3e-57 225.3 351 54.4
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 9.5e-57 224.9 365 60.5
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-56 224.6 357 60.5
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 1.2e-56 224.6 357 60.5
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.2e-56 224.6 365 52.3
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 1.2e-56 224.6 364 59.1
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 2.1e-56 223.8 355 64.2
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 2.8e-56 223.4 365 63.0
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 3.6e-56 223.0 370 59.2
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 3.6e-56 223.0 355 60.0
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 1.1e-55 221.5 362 52.5
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 2.3e-55 220.3 351 56.7
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 3.1e-55 219.9 374 62.3
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 8.9e-55 218.4 357 57.1
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 3.4e-54 216.5 353 55.8
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 3.4e-54 216.5 353 55.8
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 5.8e-54 215.7 368 60.1
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 1.3e-53 214.5 356 54.8
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 2.9e-53 213.4 351 55.0
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 2.9e-53 213.4 353 55.0
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 3.7e-53 213.0 355 55.8
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 4.9e-53 212.6 354 53.7
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 4.9e-53 212.6 364 58.8
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 4.9e-53 212.6 356 57.6
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 6.4e-53 212.2 374 57.8
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 8.3e-53 211.8 353 52.4
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 1.4e-52 211.1 359 57.7
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 1.9e-52 210.7 362 55.8
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 7.1e-52 208.8 376 57.4
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 9.2e-52 208.4 366 41.8
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.6e-51 207.6 356 42.7
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 2.7e-51 206.8 360 54.7
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 4.6e-51 206.1 392 57.1
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 6.0e-51 205.7 365 55.6
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.3e-50 204.5 356 42.4
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 2.3e-50 203.8 396 49.5
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 3.3e-49 199.9 153 68.0
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 3.6e-48 196.4 354 57.9
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 4.0e-47 193.0 373 56.6
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 1.2e-46 191.4 356 53.7
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 1.0e-42 178.3 304 54.3
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 5.1e-42 176.0 356 49.2
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 1.1e-41 174.9 341 57.2
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 2.1e-40 170.6 360 53.1
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 4.7e-40 169.5 161 61.5
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 1.4e-39 167.9 355 39.4
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 2.4e-39 167.2 158 60.8
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 6.8e-39 165.6 190 52.1
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 3.4e-38 163.3 277 64.3
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 6.4e-37 159.1 349 43.6
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 1.9e-36 157.5 402 48.3
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 7.8e-35 152.1 378 44.7
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 8.1e-32 142.1 143 52.4
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 1.8e-31 141.0 120 58.3
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 1.2e-30 138.3 294 55.4
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 1.3e-29 134.8 112 58.9
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 1.9e-28 131.0 118 55.1
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 6.7e-26 122.5 259 51.4
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 1.1e-25 121.7 276 52.9
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 8.1e-24 115.5 501 25.3
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 2.4e-23 114.0 184 38.6
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 3.1e-23 113.6 149 48.3
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 2.9e-21 107.1 99 54.5
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 1.1e-20 105.1 404 33.2
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 3.5e-19 100.1 86 69.8
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 1.3e-18 98.2 105 53.3
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 6.7e-18 95.9 79 70.9
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 1.1e-17 95.1 103 60.2
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 1.5e-17 94.7 91 53.8
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 1.5e-17 94.7 169 37.3
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 4.3e-17 93.2 92 56.5
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 3.7e-16 90.1 77 68.8
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 3.1e-15 87.0 160 33.8
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.9e-13 79.7 117 41.9
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.1e-11 74.3 77 53.2
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 4.6e-11 73.2 103 41.7
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 6.0e-11 72.8 114 40.4
arahy.Tifrunner.gnm1.ann1.696ALD Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-10 71.6 75 53.3
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-10 71.6 103 40.8
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 1.3e-10 71.6 96 45.8
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 8.7e-10 68.9 40 77.5
arahy.Tifrunner.gnm1.ann1.YEU6LJ Arachis hypogaea HOM05D006566 ORTHO05D004366 4.3e-09 66.6 62 56.5
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 1.6e-08 64.7 114 36.8
arahy.Tifrunner.gnm1.ann1.1NHG9F Arachis hypogaea HOM05D008215 ORTHO05D004366 1.6e-08 64.7 105 40.0
arahy.Tifrunner.gnm1.ann1.1P551D Arachis hypogaea HOM05D008215 ORTHO05D004366 1.6e-08 64.7 108 41.7
arahy.Tifrunner.gnm1.ann1.0AYN0M Arachis hypogaea HOM05D008215 ORTHO05D004366 2.8e-08 63.9 102 43.1
arahy.Tifrunner.gnm1.ann1.PJX35B Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-07 61.6 104 39.4
arahy.Tifrunner.gnm1.ann1.U9CRBQ Arachis hypogaea HOM05D008215 ORTHO05D004366 1.4e-07 61.6 101 42.6
arahy.Tifrunner.gnm1.ann1.3DHQ20 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-07 60.8 105 40.0
arahy.Tifrunner.gnm1.ann1.TAU4F3 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-07 60.8 89 43.8
arahy.Tifrunner.gnm1.ann1.01UHHT Arachis hypogaea HOM05D008215 ORTHO05D004366 3.1e-07 60.5 104 40.4
arahy.Tifrunner.gnm1.ann1.J3W7RL Arachis hypogaea HOM05D008215 ORTHO05D004366 4.1e-07 60.1 101 41.6
arahy.Tifrunner.gnm1.ann1.P1RV09 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.1e-07 60.1 101 41.6
arahy.Tifrunner.gnm1.ann1.KE1U92 Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-07 59.3 101 40.6
arahy.Tifrunner.gnm1.ann1.U6CLNF Arachis hypogaea HOM05D008215 ORTHO05D004366 6.9e-07 59.3 104 38.5
arahy.Tifrunner.gnm1.ann1.15M8G9 Arachis hypogaea HOM05D008215 ORTHO05D004366 3.4e-06 57.0 102 39.2
arahy.Tifrunner.gnm1.ann1.8PL5QC Arachis hypogaea HOM05D008215 ORTHO05D004366 4.5e-06 56.6 101 39.6
arahy.Tifrunner.gnm1.ann1.N5TKCQ Arachis hypogaea HOM05D008215 ORTHO05D004366 7.6e-06 55.8 113 36.3


User provided reference genes

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