Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 2.4e-127 458.8 217 100.0
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 1.0e-90 337.0 223 76.7
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 2.4e-87 325.9 175 92.6
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 2.1e-83 312.8 220 71.8
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 7.5e-73 277.7 219 63.0
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 8.3e-72 274.2 220 64.5
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 5.6e-68 261.5 215 63.7
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 2.8e-67 259.2 232 59.1
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 6.2e-67 258.1 213 65.3
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 8.1e-67 257.7 213 64.8
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.0e-65 253.1 220 61.4
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 2.6e-65 252.7 213 64.8
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 3.4e-65 252.3 240 56.7
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 7.6e-65 251.1 223 60.5
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 7.6e-65 251.1 231 61.5
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 9.9e-65 250.8 220 61.4
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 9.9e-65 250.8 220 61.4
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.2e-64 249.6 220 61.8
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 4.9e-64 248.4 228 60.1
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 8.4e-64 247.7 213 61.0
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.1e-63 247.3 222 58.1
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 1.1e-63 247.3 219 61.6
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 4.1e-63 245.4 219 61.2
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 5.4e-63 245.0 213 58.7
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 9.2e-63 244.2 216 61.1
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 4.6e-62 241.9 213 58.7
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 6.0e-62 241.5 223 57.0
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 6.0e-62 241.5 229 57.2
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 6.0e-62 241.5 209 59.8
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 7.8e-62 241.1 214 59.8
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.0e-61 240.7 220 57.3
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 1.3e-61 240.4 222 57.7
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 1.7e-61 240.0 228 54.4
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 1.7e-61 240.0 222 56.8
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.3e-61 239.6 216 58.8
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.1e-60 237.3 212 58.0
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 1.5e-60 236.9 212 58.5
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 2.5e-60 236.1 213 59.6
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 3.3e-60 235.7 223 55.6
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.3e-60 235.7 238 55.5
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 9.6e-60 234.2 212 58.0
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 9.6e-60 234.2 217 57.6
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 1.6e-59 233.4 212 57.5
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 2.1e-59 233.0 238 54.2
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 2.8e-59 232.6 219 55.3
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 2.8e-59 232.6 221 58.8
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 8.1e-59 231.1 217 56.7
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.4e-58 230.3 214 57.0
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.4e-58 230.3 214 57.0
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 1.8e-58 229.9 224 55.8
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 1.8e-58 229.9 214 54.2
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 3.1e-58 229.2 218 58.3
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 1.2e-57 227.3 229 55.0
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 1.2e-57 227.3 217 58.5
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 2.6e-57 226.1 209 56.9
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 2.6e-57 226.1 177 63.8
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 2.6e-57 226.1 213 55.9
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 3.4e-57 225.7 211 55.9
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 4.4e-57 225.3 214 55.6
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 5.8e-57 224.9 221 53.8
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 5.8e-57 224.9 241 54.8
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 5.8e-57 224.9 222 54.5
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 1.7e-56 223.4 215 55.8
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 2.9e-56 222.6 212 54.7
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.9e-56 222.6 215 54.4
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 3.8e-56 222.2 210 55.2
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 3.8e-56 222.2 215 54.0
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 8.4e-56 221.1 228 54.4
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 3.2e-55 219.2 163 63.8
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.2e-55 218.8 163 66.9
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 4.2e-55 218.8 230 52.2
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 7.8e-54 214.5 205 56.1
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 1.0e-53 214.2 145 75.9
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 1.7e-53 213.4 214 53.3
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 3.0e-53 212.6 204 54.4
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 3.0e-53 212.6 232 51.7
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 8.7e-53 211.1 215 53.0
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 1.5e-52 210.3 210 53.8
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 2.5e-52 209.5 227 49.8
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 2.5e-52 209.5 210 54.8
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 2.5e-52 209.5 210 54.8
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 4.3e-52 208.8 250 48.0
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 1.3e-51 207.2 210 53.3
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 1.6e-51 206.8 210 53.3
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.8e-50 203.4 176 57.4
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 2.1e-46 189.9 195 56.9
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.3e-45 187.2 147 66.7
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 6.7e-45 184.9 152 63.8
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.1e-43 179.9 192 51.0
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 4.0e-42 175.6 147 60.5
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 5.3e-42 175.3 151 60.3
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 1.5e-41 173.7 181 53.0
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 1.3e-40 170.6 161 56.5
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 2.7e-38 162.9 172 49.4
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 3.0e-37 159.5 135 60.0
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 3.9e-37 159.1 101 73.3
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 6.7e-37 158.3 170 49.4
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.3e-36 156.0 130 63.1
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 7.4e-36 154.8 176 46.0
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 6.2e-35 151.8 142 52.1
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 1.4e-34 150.6 140 54.3
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 6.9e-34 148.3 105 67.6
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 1.7e-32 143.7 167 45.5
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 1.6e-30 137.1 97 67.0
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 2.1e-30 136.7 171 46.2
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 6.0e-30 135.2 104 65.4
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 1.0e-29 134.4 94 67.0
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 6.3e-27 125.2 112 58.9
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 2.4e-26 123.2 100 61.0
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 3.4e-25 119.4 170 41.8
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 3.6e-22 109.4 124 50.8
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 1.8e-21 107.1 85 64.7
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 3.9e-21 105.9 202 33.7
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 1.9e-20 103.6 84 59.5
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 1.5e-17 94.0 57 71.9
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 6.5e-16 88.6 90 50.0
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 6.5e-16 88.6 98 50.0
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 1.9e-15 87.0 68 60.3
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 9.4e-15 84.7 78 56.4
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.7e-14 83.2 92 48.9
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 6.1e-14 82.0 65 64.6
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 4.8e-11 72.4 79 51.9


User provided reference genes

Program Settings