Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.6e-62 241.9 125 100.0
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 1.1e-44 183.3 101 89.1
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 3.4e-41 171.8 105 85.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.5e-33 146.4 100 76.0
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 1.5e-33 146.4 100 76.0
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 5.7e-33 144.4 98 76.5
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.3e-32 143.3 100 74.0
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 2.2e-32 142.5 101 72.3
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 3.7e-32 141.7 96 76.0
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 4.9e-32 141.4 100 75.0
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 8.3e-32 140.6 101 72.3
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 2.4e-31 139.0 101 71.3
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 2.4e-31 139.0 98 75.5
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.4e-31 139.0 98 75.5
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 2.4e-31 139.0 98 75.5
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 2.4e-31 139.0 100 74.0
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 2.4e-31 139.0 102 73.5
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.1e-31 138.7 99 73.7
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 5.4e-31 137.9 98 74.5
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 7.0e-31 137.5 100 71.0
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.2e-30 136.7 100 73.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 1.2e-30 136.7 103 69.9
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 2.0e-30 136.0 101 71.3
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 2.0e-30 136.0 100 72.0
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 2.7e-30 135.6 99 71.7
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 2.7e-30 135.6 102 70.6
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 2.7e-30 135.6 100 72.0
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.0e-29 133.7 99 70.7
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 1.3e-29 133.3 101 68.3
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 1.3e-29 133.3 96 71.9
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 1.7e-29 132.9 100 71.0
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 2.3e-29 132.5 106 67.0
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 2.9e-29 132.1 99 67.7
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 3.8e-29 131.7 98 72.4
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 1.5e-28 129.8 99 67.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 1.5e-28 129.8 99 68.7
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 1.5e-28 129.8 99 68.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.9e-28 129.4 96 70.8
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 2.5e-28 129.0 94 72.3
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 2.5e-28 129.0 99 67.7
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.3e-28 128.3 93 69.9
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 4.3e-28 128.3 100 67.0
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 4.3e-28 128.3 101 68.3
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.3e-28 127.5 100 67.0
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 9.5e-28 127.1 96 66.7
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-27 126.7 97 67.0
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 1.2e-27 126.7 99 67.7
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.2e-27 126.7 101 69.3
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.6e-27 126.3 100 66.0
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.6e-27 126.3 99 65.7
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.6e-27 126.3 98 66.3
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 2.1e-27 125.9 94 70.2
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.8e-27 125.6 99 66.7
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.8e-27 125.6 93 66.7
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 3.6e-27 125.2 99 69.7
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 3.6e-27 125.2 90 70.0
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 6.1e-27 124.4 99 66.7
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 8.0e-27 124.0 98 67.3
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 8.0e-27 124.0 102 66.7
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.0e-26 123.6 100 64.0
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.4e-26 123.2 99 65.7
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 1.4e-26 123.2 96 67.7
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.8e-26 122.9 97 67.0
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 1.8e-26 122.9 99 66.7
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 2.3e-26 122.5 96 67.7
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 3.0e-26 122.1 96 69.8
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 3.0e-26 122.1 99 62.6
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 4.0e-26 121.7 93 68.8
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 6.8e-26 120.9 101 64.4
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 8.9e-26 120.6 100 66.0
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 8.9e-26 120.6 98 63.3
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 1.2e-25 120.2 92 70.7
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 1.2e-25 120.2 97 64.9
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.5e-25 119.8 96 64.6
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 1.5e-25 119.8 99 62.6
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 2.0e-25 119.4 96 65.6
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 2.6e-25 119.0 93 63.4
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 2.6e-25 119.0 92 65.2
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 3.4e-25 118.6 93 64.5
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 3.4e-25 118.6 101 65.3
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 3.4e-25 118.6 96 65.6
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 3.4e-25 118.6 101 61.4
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 7.5e-25 117.5 96 65.6
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 9.8e-25 117.1 93 63.4
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 9.8e-25 117.1 93 63.4
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.3e-24 116.7 101 64.4
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.7e-24 116.3 91 67.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.7e-24 116.3 93 62.4
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 1.7e-24 116.3 96 64.6
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 2.2e-24 115.9 99 60.6
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 2.2e-24 115.9 93 64.5
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 2.9e-24 115.5 93 62.4
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 2.9e-24 115.5 93 62.4
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 8.3e-24 114.0 95 62.1
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 8.3e-24 114.0 96 65.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 1.1e-23 113.6 99 62.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.9e-23 112.8 94 61.7
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.9e-23 112.8 96 60.4
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 3.2e-23 112.1 92 64.1
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 3.2e-23 112.1 92 59.8
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 3.2e-23 112.1 96 63.5
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 4.1e-23 111.7 94 61.7
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.6e-22 109.8 85 65.9
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 4.6e-22 108.2 95 57.9
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 6.0e-22 107.8 94 58.5
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.0e-22 107.8 78 73.1
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 6.0e-22 107.8 78 73.1
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 7.8e-22 107.5 92 62.0
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 7.8e-22 107.5 92 62.0
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 7.8e-22 107.5 92 62.0
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 8.6e-21 104.0 92 60.9
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 4.3e-20 101.7 91 57.1
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 5.6e-20 101.3 109 53.2
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 1.2e-19 100.1 64 71.9
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 2.8e-19 99.0 91 54.9
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 3.6e-19 98.6 136 49.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 8.9e-18 94.0 78 62.8
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 3.4e-17 92.0 102 50.0
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 3.4e-17 92.0 77 61.0
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 5.8e-17 91.3 76 63.2
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 1.3e-16 90.1 74 66.2
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.9e-16 88.2 104 49.0
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 4.9e-16 88.2 78 61.5
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 6.4e-16 87.8 85 56.5
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 1.4e-15 86.7 104 48.1
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.4e-15 85.9 77 61.0
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 9.2e-15 84.0 99 55.6
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 4.6e-14 81.6 87 51.7
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 7.8e-14 80.9 91 49.5
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 5.1e-13 78.2 91 52.7
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 1.9e-12 76.3 87 50.6
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.3e-12 75.5 91 46.2
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 9.5e-12 73.9 67 58.2
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 2.8e-11 72.4 62 58.1
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 2.8e-11 72.4 66 60.6
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 6.2e-11 71.2 57 59.6
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.4e-10 70.1 72 50.0
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 3.1e-10 68.9 73 47.9
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.2e-09 67.0 61 52.5
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 1.2e-09 67.0 60 55.0
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 3.4e-09 65.5 85 48.2
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 7.5e-09 64.3 86 47.7
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.4e-07 59.3 81 42.0
AagrBONN_evm.TU.Sc2ySwM_344.5276 Anthoceros agrestis HOM05D005070 ORTHO05D005987 4.1e-07 58.5 71 43.7
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 3.5e-06 55.5 34 76.5


User provided reference genes

Program Settings