Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1182500 Malus domestica HOM05D006935 ORTHO05D008944 3.1e-165 585.1 303 100.0
RcHm_v2.0_Chr7g0193711 Rosa chinensis HOM05D006935 ORTHO05D008944 3.8e-131 471.9 303 80.5
FvH4_5g05200 Fragaria vesca HOM05D006935 ORTHO05D008944 5.0e-131 471.5 305 82.3
FAN04G2667 Fragaria x ananassa HOM05D006935 ORTHO05D008944 1.5e-124 449.9 273 85.3
FAN18G4193 Fragaria x ananassa HOM05D006935 ORTHO05D004872 2.2e-123 446.0 274 84.3
QL10p011920 Quercus lobata HOM05D006935 ORTHO05D008944 2.5e-122 442.6 308 75.3
PGR083G2867 Punica granatum HOM05D006935 ORTHO05D008944 1.4e-120 436.8 299 76.3
Ciclev10021410m.g Citrus clementina HOM05D006935 ORTHO05D008944 6.7e-120 434.5 302 73.8
Eucgr.B00368 Eucalyptus grandis HOM05D006935 ORTHO05D008944 1.1e-119 433.7 279 79.2
Cpa.g.sc124.48 Carica papaya HOM05D006935 ORTHO05D008944 2.6e-119 432.6 284 78.2
Atru.chr9.2451 Acer truncatum HOM05D006935 ORTHO05D008944 3.3e-119 432.2 287 75.6
Nn4g22789 Nelumbo nucifera HOM05D006935 ORTHO05D008944 1.3e-118 430.3 303 75.2
Haze_07457 Corylus avellana HOM05D006935 ORTHO05D008944 4.8e-118 428.3 306 73.5
CiPaw.11G027700 Carya illinoinensis HOM05D006935 ORTHO05D008944 6.3e-118 427.9 287 76.0
TWI81G0925 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 6.3e-118 427.9 275 77.8
TWI81G0947 Tripterygium wilfordii HOM05D006935 ORTHO05D008944 6.3e-118 427.9 275 77.8
Actinidia19311 Actinidia chinensis HOM05D006935 ORTHO05D008944 8.2e-118 427.6 287 74.9
Duzib068G1137 Durio zibethinus HOM05D006935 ORTHO05D008944 1.1e-117 427.2 281 76.9
GSVIVG01007766001 Vitis vinifera HOM05D006935 ORTHO05D008944 1.8e-117 426.4 302 74.2
CSS0041391 Camellia sinensis var. sinensis HOM05D006935 ORTHO05D008944 3.1e-117 425.6 307 72.6
Manes.06G104000 Manihot esculenta HOM05D006935 ORTHO05D008944 4.1e-117 425.2 306 73.5
Thecc.03G010500 Theobroma cacao HOM05D006935 ORTHO05D008944 4.1e-117 425.2 307 73.0
CANSAT80G0279 Cannabis sativa HOM05D006935 ORTHO05D008944 5.3e-117 424.9 239 87.9
Sopen03g033350 Solanum pennellii HOM05D006935 ORTHO05D008944 1.2e-116 423.7 274 77.4
PGSC0003DMG400024494 Solanum tuberosum HOM05D006935 ORTHO05D008944 1.2e-116 423.7 274 77.7
COL.COLO4_04599 Corchorus olitorius HOM05D006935 ORTHO05D008944 2.0e-116 422.9 303 72.9
vmacro19376 Vaccinium macrocarpon HOM05D006935 ORTHO05D008944 5.9e-116 421.4 302 71.9
MSTRG.11442 Avicennia marina HOM05D006935 ORTHO05D008944 1.0e-115 420.6 314 70.7
Lalb_Chr07g0182691 Lupinus albus HOM05D006935 ORTHO05D008944 1.3e-115 420.2 262 79.0
Cc04_g13740 Coffea canephora HOM05D006935 ORTHO05D008944 2.2e-115 419.5 316 69.9
Gohir.D11G001000 Gossypium hirsutum HOM05D006935 ORTHO05D008944 5.0e-115 418.3 271 76.8
Gorai.007G001900 Gossypium raimondii HOM05D006935 ORTHO05D008944 5.0e-115 418.3 271 76.8
Sabra15G0098700 Salix brachista HOM05D006935 ORTHO05D008944 5.0e-115 418.3 300 72.0
SGA_v2.0_scaffold90G27953 Striga asiatica HOM05D006935 ORTHO05D008944 5.0e-115 418.3 281 75.8
Potri.015G074700 Populus trichocarpa HOM05D006935 ORTHO05D008944 6.5e-115 417.9 271 77.5
Rhsim08G0171100 Rhododendron simsii HOM05D006935 ORTHO05D008944 8.5e-115 417.5 304 71.7
CsaV3_1G008420 Cucumis sativus L. HOM05D006935 ORTHO05D008944 1.5e-114 416.8 270 77.8
Solyc03g114250.4 Solanum lycopersicum HOM05D006935 ORTHO05D008944 2.5e-114 416.0 272 77.6
Gohir.A11G001400 Gossypium hirsutum HOM05D006935 ORTHO05D008944 5.5e-114 414.8 271 76.0
Glyma.05G036900 Glycine max HOM05D006935 ORTHO05D008944 9.4e-114 414.1 288 75.0
VMungo1215G2532 Vigna mungo HOM05D006935 ORTHO05D008944 1.6e-113 413.3 247 82.2
Carub.0008s2355 Capsella rubella HOM05D006935 ORTHO05D008944 2.1e-113 412.9 289 73.4
Lj4g0026943 Lotus japonicus HOM05D006935 ORTHO05D008944 2.7e-113 412.5 288 74.7
Phvul.003G199600 Phaseolus vulgaris HOM05D006935 ORTHO05D008944 4.7e-113 411.8 289 74.0
THA.LOC104798977 Tarenaya hassleriana HOM05D006935 ORTHO05D008944 4.7e-113 411.8 281 74.0
Migut.I00022 Erythranthe guttata HOM05D006935 ORTHO05D008944 6.1e-113 411.4 312 67.9
HanXRQChr16g0517271 Helianthus annuus HOM05D006935 ORTHO05D008944 6.1e-113 411.4 312 71.2
SalBow5G1860 Salvia bowleyana HOM05D006935 ORTHO05D008944 6.1e-113 411.4 307 71.3
AT5G62840 Arabidopsis thaliana HOM05D006935 ORTHO05D008944 8.0e-113 411.0 271 76.0
Cfa019105 Carpinus fangiana HOM05D006935 ORTHO05D004872 1.0e-112 410.6 293 73.0
BcaC01g02525 Brassica carinata HOM05D006935 ORTHO05D008944 1.4e-112 410.2 303 69.3
C03p63900 Brassica napus HOM05D006935 ORTHO05D008944 1.4e-112 410.2 303 69.3
BolC3t18645H Brassica oleracea HOM05D006935 ORTHO05D008944 1.4e-112 410.2 303 69.3
Aa31LG11G860 Aethionema arabicum HOM05D006935 ORTHO05D008944 1.8e-112 409.8 271 74.2
Sp2g25990 Schrenkiella parvula HOM05D006935 ORTHO05D008944 2.3e-112 409.5 271 75.3
BcaB02g09696 Brassica carinata HOM05D006935 ORTHO05D008944 3.0e-112 409.1 271 75.6
AL8G39840 Arabidopsis lyrata HOM05D006935 ORTHO05D008944 6.7e-112 407.9 271 75.3
BraA06t25905Z Brassica rapa HOM05D006935 ORTHO05D008944 8.8e-112 407.5 278 73.0
ECA236G1157 Erigeron canadensis HOM05D006935 ORTHO05D008944 1.2e-111 407.1 280 75.4
Thhalv10004703m.g Eutrema salsugineum HOM05D006935 ORTHO05D008944 1.2e-111 407.1 271 75.3
TPR.G37522 Trifolium pratense HOM05D006935 ORTHO05D008944 1.5e-111 406.8 299 69.6
CARHR276620 Cardamine hirsuta HOM05D006935 ORTHO05D008944 2.0e-111 406.4 302 68.9
A06p29590 Brassica napus HOM05D006935 ORTHO05D008944 2.6e-111 406.0 303 68.3
Lsat_1_v5_gn_5_17180 Lactuca sativa HOM05D006935 ORTHO05D008944 2.6e-111 406.0 278 74.8
Medtr4g106970 Medicago truncatula HOM05D006935 ORTHO05D008944 5.7e-111 404.8 306 67.6
Nitab4.5_0005862g0020 Nicotiana tabacum HOM05D006935 ORTHO05D008944 1.8e-109 399.8 313 68.7
unitig_749.g13472 Utricularia gibba HOM05D006935 ORTHO05D008944 1.8e-109 399.8 275 74.9
TAR622G0425 Trochodendron aralioides HOM05D006935 ORTHO05D008944 2.4e-109 399.4 230 83.0
ClCG01G013080 Citrullus lanatus HOM05D006935 ORTHO05D008944 3.1e-109 399.1 282 73.8
MELO3C002259.2 Cucumis melo HOM05D006935 ORTHO05D008944 7.0e-109 397.9 282 73.4
MBI16_g05651_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 3.8e-107 392.1 230 81.3
Nitab4.5_0000852g0050 Nicotiana tabacum HOM05D006935 ORTHO05D008944 8.5e-107 391.0 268 75.4
Aqoxy3G02966 Aquilegia oxysepala HOM05D006935 ORTHO05D008944 1.9e-106 389.8 271 72.7
Sc12g0005390 Simmondsia chinensis HOM05D006935 ORTHO05D008944 1.9e-106 389.8 310 65.8
Ah.02g110460 Amaranthus hybridus HOM05D006935 ORTHO05D008944 9.4e-106 387.5 299 65.2
MBI16_g32800_MAGBIO Magnolia biondii HOM05D006935 ORTHO05D008944 9.4e-106 387.5 296 67.9
AUR62008221 Chenopodium quinoa HOM05D006935 ORTHO05D008944 6.8e-104 381.3 239 79.1
EL10Ac5g10748 Beta vulgaris HOM05D006935 ORTHO05D008944 1.1e-101 374.0 230 78.7
Dinv09149 Davidia involucrata HOM05D006935 ORTHO05D008944 1.8e-101 373.2 270 70.7
PSO302G0172 Papaver somniferum HOM05D006935 ORTHO05D008944 4.1e-101 372.1 286 66.1
Hund09430 Selenicereus undatus HOM05D006935 ORTHO05D004872 3.5e-100 369.0 262 71.4
Os01g0660900 Oryza sativa ssp. japonica HOM05D006935 ORTHO05D008944 1.3e-99 367.1 242 74.0
Oeu016368.1 Olea europaea HOM05D006935 ORTHO05D008944 1.7e-99 366.7 305 65.9
CAN.G781.17 Capsicum annuum HOM05D006935 ORTHO05D008944 1.1e-98 364.0 234 81.2
Peaxi162Scf00017g02821 Petunia axillaris HOM05D006935 ORTHO05D008944 2.5e-98 362.8 241 78.4
Zm00001eb359580 Zea mays HOM05D006935 ORTHO05D008944 1.0e-96 357.5 276 67.0
HPP92_024712 Vanilla planifolia HOM05D006935 ORTHO05D008944 1.2e-95 354.0 263 67.7
AUR62030975 Chenopodium quinoa HOM05D006935 ORTHO05D008944 1.5e-95 353.6 234 74.8
SEGI_12501 Sequoiadendron giganteum HOM05D006935 ORTHO05D008944 5.7e-95 351.7 238 70.2
CDE04G2457 Ceratophyllum demersum HOM05D005049 ORTHO05D004872 6.3e-94 348.2 231 72.7
FAN08G3443 Fragaria x ananassa HOM05D006935 ORTHO05D004872 5.9e-92 341.7 241 78.4
Ca_21910_v3 Cicer arietinum L. HOM05D006935 ORTHO05D008944 5.0e-91 338.6 231 74.0
Pp3c16_7000 Physcomitrium patens HOM05D006935 ORTHO05D008944 9.5e-90 334.3 239 68.2
Psat4g057680 Pisum sativum HOM05D006935 ORTHO05D008944 4.7e-89 332.0 248 69.8
Prupe.5G175000 Prunus persica HOM05D006935 ORTHO05D008944 4.9e-86 322.0 303 61.4
Peaxi162Scf00017g02830 Petunia axillaris HOM05D006935 ORTHO05D008944 7.8e-84 314.7 209 78.0
Mapoly0091s0071 Marchantia polymorpha HOM05D006935 ORTHO05D008944 2.5e-82 309.7 265 60.0
ATR0730G238 Amborella trichopoda HOM05D006935 ORTHO05D008944 4.9e-78 295.4 257 60.7
SMO141G0200 Selaginella moellendorffii HOM05D006935 ORTHO05D008944 2.1e-73 280.0 182 74.7
EL10Ac5g10761 Beta vulgaris HOM05D006935 ORTHO05D008944 2.9e-70 269.6 221 65.2
AagrBONN_evm.TU.Sc2ySwM_117.38 Anthoceros agrestis HOM05D006935 ORTHO05D008944 3.7e-70 269.2 193 68.4
Hma1.2p1_0176F.1_g077560 Hydrangea macrophylla HOM05D006935 ORTHO05D008944 2.1e-60 236.9 176 69.9
Cre06.g272300 Chlamydomonas reinhardtii HOM05D006935 ORTHO05D008944 1.2e-57 227.6 271 50.2
Sed0005822 Sechium edule HOM05D006935 ORTHO05D008944 4.4e-55 219.2 161 70.2
arahy.Tifrunner.gnm1.ann1.0F4FSZ Arachis hypogaea HOM05D006935 ORTHO05D008944 3.3e-50 203.0 113 85.0
arahy.Tifrunner.gnm1.ann1.209TGD Arachis hypogaea HOM05D006935 ORTHO05D008944 3.3e-50 203.0 115 82.6
Actinidia20183 Actinidia chinensis HOM05D006935 ORTHO05D008944 9.6e-50 201.4 117 86.3
Psat4g057640 Pisum sativum HOM05D006935 ORTHO05D008944 1.7e-46 190.7 218 49.5
Lj5C123T7 Lonicera japonica HOM05D006935 ORTHO05D008944 1.3e-41 174.5 112 75.0
MD06G1175700 Malus domestica HOM05D006935 ORTHO05D008944 2.1e-41 173.7 221 50.2
Lj5C123T8 Lonicera japonica HOM05D006935 ORTHO05D008944 1.1e-29 134.8 77 81.8
PRCOL_00001554 Prasinoderma coloniale HOM05D006935 ORTHO05D008944 2.5e-21 107.1 211 37.0
Actinidia01759 Actinidia chinensis HOM05D006935 ORTHO05D008944 2.8e-17 93.6 63 73.0
MCO16G270 Micromonas commoda HOM05D006935 ORTHO05D008944 4.1e-16 89.7 209 32.5
Hund09427 Selenicereus undatus HOM05D006935 ORTHO05D008944 9.7e-10 68.6 58 56.9
Nn4g24775 Nelumbo nucifera HOM05D006935 ORTHO05D008944 5.3e-08 62.8 33 78.8
Cre13.g564000 Chlamydomonas reinhardtii HOM05D006820 ORTHO05D008526 2.6e-07 60.5 205 28.8
PGSC0003DMG400014660 Solanum tuberosum HOM05D006820 ORTHO05D008526 5.0e-06 56.2 232 28.0


User provided reference genes

Program Settings