Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 1.7e-116 422.5 198 100.0
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 1.0e-84 317.0 244 67.2
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 1.6e-82 309.7 245 64.9
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.9e-78 296.2 245 62.4
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 2.4e-78 295.8 245 62.4
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.4e-78 295.8 245 62.4
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 2.4e-78 295.8 245 62.4
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 5.4e-78 294.7 244 62.3
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 2.8e-74 282.3 244 59.0
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 2.4e-73 279.3 246 57.3
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 1.2e-72 276.9 245 57.6
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 3.4e-72 275.4 245 58.0
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 6.4e-71 271.2 246 56.1
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 1.1e-70 270.4 246 55.7
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 7.1e-70 267.7 255 54.5
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.2e-69 266.9 245 54.7
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 1.2e-69 266.9 238 55.9
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 2.1e-69 266.2 246 55.7
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 1.0e-68 263.8 246 54.9
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 1.3e-68 263.5 247 54.7
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.8e-68 263.1 246 54.9
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 2.3e-68 262.7 246 54.5
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 3.9e-68 261.9 241 55.2
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 5.1e-68 261.5 244 55.3
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 1.1e-67 260.4 246 53.7
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 4.0e-65 251.9 245 51.8
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 6.9e-65 251.1 244 52.0
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 9.0e-65 250.8 245 51.0
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 2.0e-64 249.6 245 51.0
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 2.6e-64 249.2 246 52.0
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 3.4e-64 248.8 255 50.6
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 4.5e-64 248.4 255 50.2
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 7.6e-64 247.7 293 44.4
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.0e-63 247.3 220 59.5
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 2.2e-63 246.1 246 51.2
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 8.4e-63 244.2 226 54.9
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.9e-62 243.0 248 54.4
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 4.2e-62 241.9 225 55.6
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 5.5e-62 241.5 242 51.2
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.0e-60 237.3 226 53.5
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 2.5e-59 232.6 219 54.3
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 7.4e-59 231.1 245 48.6
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 1.3e-58 230.3 245 49.8
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 2.1e-58 229.6 250 48.4
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 2.8e-58 229.2 239 48.5
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 2.8e-58 229.2 225 52.0
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 8.2e-58 227.6 241 49.0
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 8.2e-58 227.6 241 49.8
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 1.1e-57 227.3 221 52.5
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 1.8e-57 226.5 246 49.6
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 1.8e-57 226.5 245 48.2
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 2.6e-56 222.6 221 54.3
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 2.2e-55 219.5 221 52.0
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 3.8e-55 218.8 245 48.2
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 6.5e-55 218.0 221 52.0
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 6.5e-55 218.0 221 51.6
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 8.4e-55 217.6 242 47.5
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 8.4e-55 217.6 221 53.4
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 1.9e-54 216.5 245 47.8
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 1.9e-54 216.5 221 51.6
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 2.5e-54 216.1 246 46.7
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 2.5e-54 216.1 224 50.4
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 3.2e-54 215.7 245 46.5
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 7.2e-54 214.5 243 46.5
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.6e-53 213.4 225 52.0
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 1.6e-53 213.4 248 45.2
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 2.1e-53 213.0 225 52.0
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 1.0e-52 210.7 224 51.8
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 2.3e-52 209.5 221 50.2
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 3.0e-52 209.1 224 48.2
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 3.9e-52 208.8 246 45.5
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 8.7e-52 207.6 242 45.9
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 9.7e-51 204.1 245 45.3
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 6.3e-50 201.4 223 48.9
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 4.1e-49 198.7 220 47.7
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 4.1e-49 198.7 228 48.2
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 5.3e-49 198.4 228 47.4
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 4.5e-48 195.3 224 47.8
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 5.9e-48 194.9 220 48.6
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 7.7e-48 194.5 205 50.7
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 1.3e-47 193.7 217 48.8
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 6.5e-47 191.4 222 45.9
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 1.4e-46 190.3 210 47.6
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 1.2e-45 187.2 180 52.2
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 3.9e-44 182.2 215 46.0
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 6.7e-44 181.4 217 46.1
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 6.7e-44 181.4 180 50.6
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 6.7e-44 181.4 180 50.6
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 1.7e-42 176.8 181 51.4
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 1.8e-41 173.3 185 50.8
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 9.1e-41 171.0 211 43.6
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 9.1e-41 171.0 211 43.6
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 9.1e-41 171.0 211 43.6
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 7.7e-40 167.9 193 46.6
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 1.3e-39 167.2 208 45.2
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 2.2e-39 166.4 167 52.1
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 3.8e-39 165.6 179 46.9
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 1.4e-38 163.7 201 45.3
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.9e-38 163.3 167 51.5
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 8.8e-36 154.5 135 54.8
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 5.7e-35 151.8 225 38.7
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 3.7e-34 149.1 121 57.9
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 1.4e-33 147.1 233 36.9
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 2.4e-33 146.4 121 57.0
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 2.6e-32 142.9 108 63.9
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 2.9e-31 139.4 122 56.6
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 6.5e-31 138.3 249 33.7
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 4.2e-30 135.6 243 36.6
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 5.2e-28 128.6 109 58.7
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 2.2e-26 123.2 118 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 2.8e-26 122.9 229 34.1
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 3.7e-26 122.5 205 37.1
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 8.2e-26 121.3 121 50.4
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 2.4e-25 119.8 122 47.5
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 4.1e-25 119.0 78 67.9
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.6e-24 117.1 107 56.1
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 5.9e-24 115.2 99 56.6
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 3.8e-23 112.5 84 60.7
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 1.9e-22 110.2 94 58.5
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 4.2e-22 109.0 78 65.4
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 7.5e-19 98.2 76 56.6
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 8.3e-18 94.7 85 56.5
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 8.3e-18 94.7 85 56.5
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 2.2e-15 86.7 77 61.0
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 3.8e-15 85.9 97 47.4
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 2.1e-13 80.1 76 56.6
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 4.7e-13 79.0 85 48.2
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 2.6e-11 73.2 85 47.1
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 1.8e-09 67.0 107 34.6
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 3.1e-09 66.2 53 56.6
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 9.2e-09 64.7 53 54.7


User provided reference genes

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