Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 2.6e-167 592.0 311 100.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.0e-151 539.3 311 91.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 7.9e-108 394.4 312 67.0
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 1.8e-104 383.3 311 69.1
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.9e-99 365.5 310 64.8
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 2.8e-97 359.4 312 63.5
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 1.2e-95 354.0 308 64.3
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 8.5e-94 347.8 311 62.4
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 3.9e-91 339.0 339 57.8
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 3.1e-88 329.3 315 59.7
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.1e-88 328.9 259 65.6
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 9.1e-88 327.8 314 59.2
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 1.2e-87 327.4 320 59.1
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 1.1e-85 320.9 309 58.6
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 2.1e-84 316.6 346 54.3
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 6.1e-84 315.1 320 56.6
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 8.0e-84 314.7 320 58.1
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 1.8e-83 313.5 315 57.1
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 2.3e-83 313.2 307 60.3
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 4.0e-83 312.4 314 57.3
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 8.8e-83 311.2 337 55.8
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.7e-81 307.0 328 55.5
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 3.7e-81 305.8 318 58.2
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 8.3e-81 304.7 354 51.4
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 5.3e-80 302.0 333 54.7
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 5.3e-80 302.0 311 55.0
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 7.0e-80 301.6 319 54.9
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 9.1e-80 301.2 318 57.2
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 9.1e-80 301.2 321 55.8
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 4.5e-79 298.9 238 65.5
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.3e-78 297.4 347 51.0
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.1e-77 294.3 311 55.0
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 4.2e-77 292.4 305 57.0
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.2e-76 290.8 312 52.6
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.7e-76 289.7 299 54.8
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 4.7e-76 288.9 307 54.1
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 6.1e-76 288.5 314 52.9
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 8.0e-76 288.1 308 54.2
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 3.0e-75 286.2 339 51.3
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 4.0e-75 285.8 314 52.5
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 1.2e-74 284.3 299 54.2
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 4.4e-74 282.3 309 53.1
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.7e-73 280.4 286 57.7
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.2e-73 280.0 318 51.6
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 8.3e-73 278.1 305 55.1
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 8.3e-73 278.1 312 51.6
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.4e-72 277.3 319 52.0
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.4e-72 277.3 320 51.9
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 1.8e-72 276.9 319 51.7
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 1.8e-72 276.9 329 50.5
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 4.1e-72 275.8 303 53.5
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 9.1e-72 274.6 338 50.0
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 1.6e-71 273.9 308 51.0
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-71 273.5 304 51.0
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.7e-71 273.1 320 51.6
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 2.7e-71 273.1 299 52.8
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 5.9e-71 271.9 300 51.3
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 3.8e-70 269.2 301 52.2
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 1.9e-69 266.9 310 51.9
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 1.9e-69 266.9 292 52.1
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.5e-69 266.5 291 54.0
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.3e-69 266.2 318 50.9
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.1e-68 263.5 291 54.0
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 4.7e-68 262.3 300 50.3
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 1.0e-67 261.2 311 47.9
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 1.0e-67 261.2 304 51.0
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.4e-67 260.8 307 50.2
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 4.0e-67 259.2 319 49.8
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.2e-66 257.7 318 50.6
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 2.6e-66 256.5 317 50.8
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 5.7e-66 255.4 316 47.8
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 1.1e-64 251.1 320 48.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 7.0e-64 248.4 310 47.7
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 7.0e-64 248.4 307 48.2
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 7.0e-64 248.4 322 46.6
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.6e-63 245.7 310 48.7
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.3e-62 244.2 310 48.4
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.3e-62 243.4 311 46.3
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 2.5e-61 240.0 303 48.8
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 5.6e-61 238.8 326 46.3
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 5.6e-61 238.8 369 43.1
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 1.6e-60 237.3 361 42.4
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 2.1e-60 236.9 316 46.8
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 3.6e-60 236.1 301 48.2
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 8.0e-60 235.0 316 47.8
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 1.8e-59 233.8 343 44.9
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 6.8e-59 231.9 303 46.5
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 3.4e-58 229.6 314 46.5
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 4.4e-58 229.2 311 45.3
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 4.4e-58 229.2 315 45.7
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 5.8e-58 228.8 353 42.8
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 5.8e-58 228.8 314 45.9
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 9.8e-58 228.0 310 45.5
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.7e-57 226.1 311 46.6
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 4.9e-57 225.7 314 44.9
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 6.4e-57 225.3 311 45.0
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 8.3e-57 224.9 311 45.0
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 1.4e-56 224.2 314 45.2
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 1.9e-56 223.8 314 45.5
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 7.0e-56 221.9 315 44.4
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 9.2e-56 221.5 319 44.2
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 9.2e-56 221.5 301 47.5
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 1.6e-55 220.7 292 47.3
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 2.7e-55 219.9 316 45.6
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 4.6e-55 219.2 246 53.3
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 1.0e-54 218.0 314 45.2
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 1.3e-54 217.6 236 55.5
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 5.0e-54 215.7 312 43.3
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 6.6e-54 215.3 281 47.7
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 1.1e-53 214.5 231 49.8
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 7.3e-53 211.8 252 46.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 9.5e-53 211.5 312 42.3
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 9.5e-53 211.5 319 44.2
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 1.2e-52 211.1 299 44.8
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.4e-51 207.6 284 44.0
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.4e-51 207.6 312 41.0
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 1.5e-50 204.1 291 47.1
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 5.8e-50 202.2 307 43.0
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 5.6e-45 185.7 224 48.7
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.6e-44 184.1 241 46.9
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 4.7e-44 182.6 240 46.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.1e-43 181.4 134 67.2
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.8e-43 180.6 309 40.5
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.6e-42 176.8 190 52.6
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 4.9e-41 172.6 320 37.2
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 1.1e-40 171.4 192 50.0
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 7.8e-39 165.2 210 46.2
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 6.2e-36 155.6 257 37.7
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 8.9e-35 151.8 304 34.9
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 4.4e-34 149.4 309 33.0
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 6.4e-33 145.6 229 39.7
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.4e-32 144.4 204 40.2
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 7.8e-31 138.7 145 53.8
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.0e-30 138.3 230 34.8
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 4.3e-29 132.9 227 41.4
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 4.8e-28 129.4 259 34.7
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.9e-25 120.2 134 52.2
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 3.2e-24 116.7 164 42.7
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 4.6e-23 112.8 149 44.3
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 3.9e-22 109.8 184 38.0
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 2.8e-20 103.6 245 33.5
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 4.0e-19 99.8 231 34.2
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 7.6e-18 95.5 202 35.1
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 2.2e-17 94.0 193 33.7
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.1e-16 91.7 99 57.6
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 9.3e-16 88.6 70 57.1
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 8.1e-12 75.5 255 29.0
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 9.0e-11 72.0 227 26.4
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.0e-10 70.9 99 45.5
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 4.5e-10 69.7 112 31.2
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 5.8e-10 69.3 197 29.4
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.7e-09 67.8 172 29.1


User provided reference genes

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