Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1172200 Malus domestica HOM05D002645 ORTHO05D002741 1.4e-84 316.2 162 100.0
MD06G1166500 Malus domestica HOM05D002645 ORTHO05D002741 1.1e-39 167.2 119 70.6
Prupe.5G166500 Prunus persica HOM05D002645 ORTHO05D002741 7.7e-30 134.4 204 50.0
RcHm_v2.0_Chr7g0192691 Rosa chinensis HOM05D002645 ORTHO05D002741 1.3e-29 133.7 182 50.0
FvH4_5g06120 Fragaria vesca HOM05D002645 ORTHO05D002741 5.0e-29 131.7 179 48.6
FAN13G2482 Fragaria x ananassa HOM05D002645 ORTHO05D002741 2.1e-27 126.3 183 50.3
FAN08G0747 Fragaria x ananassa HOM05D002645 ORTHO05D002741 3.0e-26 122.5 183 48.1
FAN04G0990 Fragaria x ananassa HOM05D002645 ORTHO05D002741 4.0e-26 122.1 183 48.1
Potri.015G083100 Populus trichocarpa HOM05D002645 ORTHO05D002741 1.3e-21 107.1 177 42.9
CSS0025007 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 1.7e-21 106.7 174 44.3
PGR044G1459 Punica granatum HOM05D002645 ORTHO05D002741 3.2e-20 102.4 171 43.3
Atru.chr9.2561 Acer truncatum HOM05D002645 ORTHO05D002741 7.2e-20 101.3 174 44.3
Potri.012G084700 Populus trichocarpa HOM05D002645 ORTHO05D002741 1.2e-19 100.5 177 43.5
Sabra15G0106600 Salix brachista HOM05D000032 ORTHO05D002741 1.6e-19 100.1 177 41.8
Duzib205G0806 Durio zibethinus HOM05D002645 ORTHO05D002741 2.1e-19 99.8 136 52.9
CiPaw.11G021400 Carya illinoinensis HOM05D002645 ORTHO05D002741 2.7e-19 99.4 156 44.2
Haze_07573 Corylus avellana HOM05D002645 ORTHO05D002741 2.7e-19 99.4 154 46.8
Thecc.03G020100 Theobroma cacao HOM05D002645 ORTHO05D002741 2.7e-19 99.4 173 43.4
QL10p007255 Quercus lobata HOM05D002645 ORTHO05D002741 8.0e-19 97.8 174 42.5
TAR374G0680 Trochodendron aralioides HOM05D002645 ORTHO05D002741 2.3e-18 96.3 154 46.1
Manes.14G061300 Manihot esculenta HOM05D002645 ORTHO05D002741 4.0e-18 95.5 176 42.0
Cfa019206 Carpinus fangiana HOM05D002645 ORTHO05D002741 5.2e-18 95.1 171 41.5
Sabra12G0060900 Salix brachista HOM05D002645 ORTHO05D002741 5.2e-18 95.1 177 42.4
COL.COLO4_05567 Corchorus olitorius HOM05D002645 ORTHO05D002741 6.8e-18 94.7 173 43.4
Rhsim11G0055900 Rhododendron simsii HOM05D002645 ORTHO05D002741 8.8e-18 94.4 146 45.2
TAR622G0286 Trochodendron aralioides HOM05D002645 ORTHO05D002741 2.6e-17 92.8 174 42.0
Duzib068G1337 Durio zibethinus HOM05D002645 ORTHO05D002741 3.4e-17 92.4 173 41.0
Sed0017809 Sechium edule HOM05D002645 ORTHO05D002741 4.4e-17 92.0 154 44.8
vmacro19312 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 4.4e-17 92.0 199 38.2
Cc04_g11710 Coffea canephora HOM05D002645 ORTHO05D002741 7.5e-17 91.3 174 40.8
CsaV3_1G001130 Cucumis sativus L. HOM05D002645 ORTHO05D002741 7.5e-17 91.3 154 44.2
Oeu027444.1 Olea europaea HOM05D002645 ORTHO05D002741 7.5e-17 91.3 144 41.0
GSVIVG01007663001 Vitis vinifera HOM05D002645 ORTHO05D002741 7.5e-17 91.3 150 46.0
Cpa.g.sc110.4 Carica papaya HOM05D002645 ORTHO05D002741 1.7e-16 90.1 151 41.7
MELO3C026262.2 Cucumis melo HOM05D002645 ORTHO05D002741 1.7e-16 90.1 154 44.2
Aqoxy3G01205 Aquilegia oxysepala HOM05D002645 ORTHO05D002741 2.2e-16 89.7 159 39.6
CsaV3_6G008020 Cucumis sativus L. HOM05D002645 ORTHO05D002741 3.7e-16 89.0 154 44.8
Dinv38539 Davidia involucrata HOM05D002645 ORTHO05D002741 4.8e-16 88.6 157 40.8
ClCG06G001960 Citrullus lanatus HOM05D002645 ORTHO05D002741 6.3e-16 88.2 162 42.0
Ciclev10021791m.g Citrus clementina HOM05D002645 ORTHO05D002741 8.3e-16 87.8 161 40.4
Eucgr.K02804 Eucalyptus grandis HOM05D002645 ORTHO05D002741 8.3e-16 87.8 151 45.0
ECA246G4176 Erigeron canadensis HOM05D002645 ORTHO05D002741 1.8e-15 86.7 156 41.7
HanXRQChr05g0155321 Helianthus annuus HOM05D002645 ORTHO05D002741 2.4e-15 86.3 151 41.7
Lj4g0025839 Lotus japonicus HOM05D002645 ORTHO05D002741 2.4e-15 86.3 151 43.0
DCAR_016457 Daucus carota HOM05D002645 ORTHO05D002741 4.1e-15 85.5 157 41.4
TWI23G1108 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 5.4e-15 85.1 128 43.8
Lsat_1_v5_gn_5_14161 Lactuca sativa HOM05D002645 ORTHO05D002741 9.1e-15 84.3 151 40.4
Nn3g16713 Nelumbo nucifera HOM05D002645 ORTHO05D002741 1.6e-14 83.6 142 40.1
Lj5A129T72 Lonicera japonica HOM05D002645 ORTHO05D002741 2.0e-14 83.2 155 41.9
Phvul.003G204300 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 4.5e-14 82.0 151 41.7
VMungo1215G2500 Vigna mungo HOM05D002645 ORTHO05D002741 7.7e-14 81.3 151 42.4
Glyma.05G041100 Glycine max HOM05D002645 ORTHO05D002741 2.2e-13 79.7 127 40.2
Psat4g060400 Pisum sativum HOM05D002645 ORTHO05D002741 3.8e-13 79.0 148 37.8
TPR.G37541 Trifolium pratense HOM05D002645 ORTHO05D002741 3.8e-13 79.0 148 38.5
PGSC0003DMG400026986 Solanum tuberosum HOM05D002645 ORTHO05D002741 6.5e-13 78.2 143 39.2
Ca_14270_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 1.1e-12 77.4 151 39.1
Medtr4g105090 Medicago truncatula HOM05D002645 ORTHO05D002741 1.1e-12 77.4 154 39.0
Glyma.17G085200 Glycine max HOM05D002645 ORTHO05D002741 1.5e-12 77.0 127 39.4
Peaxi162Scf00089g01428 Petunia axillaris HOM05D002645 ORTHO05D002741 1.9e-12 76.6 145 40.7
SalBow5G2166 Salvia bowleyana HOM05D002645 ORTHO05D002741 4.2e-12 75.5 154 36.4
SalBow5G4247 Salvia bowleyana HOM05D002645 ORTHO05D002741 4.2e-12 75.5 154 36.4
Sopen06g028030 Solanum pennellii HOM05D002645 ORTHO05D002741 4.2e-12 75.5 125 42.4
CAN.G338.23 Capsicum annuum HOM05D002645 ORTHO05D002741 5.5e-12 75.1 143 39.2
CAN.G993.22 Capsicum annuum HOM05D002645 ORTHO05D002741 9.5e-12 74.3 143 39.9
Nitab4.5_0001793g0110 Nicotiana tabacum HOM05D002645 ORTHO05D002741 1.2e-11 73.9 142 37.3
Sopen03g031430 Solanum pennellii HOM05D002645 ORTHO05D002741 1.2e-11 73.9 143 39.9
Ah.02g110670 Amaranthus hybridus HOM05D000032 ORTHO05D002561 1.6e-11 73.6 175 34.9
Solyc03g112330.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 1.6e-11 73.6 143 39.2
SGA_v2.0_scaffold90G27851 Striga asiatica HOM05D001863 ORTHO05D001962 2.7e-11 72.8 155 39.4
CANSAT80G0636 Cannabis sativa HOM05D002645 ORTHO05D002741 3.6e-11 72.4 119 39.5
Sc04g0001570 Simmondsia chinensis HOM05D002645 ORTHO05D002741 3.6e-11 72.4 121 43.0
PGSC0003DMG400018183 Solanum tuberosum HOM05D002645 ORTHO05D002741 3.6e-11 72.4 143 38.5
Nitab4.5_0003703g0030 Nicotiana tabacum HOM05D002645 ORTHO05D002741 4.7e-11 72.0 142 37.3
Nitab4.5_0000025g0300 Nicotiana tabacum HOM05D002645 ORTHO05D002741 6.1e-11 71.6 146 34.9
MSTRG.11489 Avicennia marina HOM05D002645 ORTHO05D002741 1.8e-10 70.1 174 36.8
EL10Ac5g10665 Beta vulgaris HOM05D002645 ORTHO05D002741 1.8e-10 70.1 172 34.3
Haze_07032 Corylus avellana HOM05D002645 ORTHO05D002741 6.8e-10 68.2 93 48.4
Hma1.2p1_0046F.1_g027040 Hydrangea macrophylla HOM05D002645 ORTHO05D002741 1.2e-09 67.4 81 55.6
Nitab4.5_0001683g0040 Nicotiana tabacum HOM05D002645 ORTHO05D002741 1.2e-09 67.4 144 36.1
arahy.Tifrunner.gnm1.ann1.P3E3V7 Arachis hypogaea HOM05D002645 ORTHO05D002741 1.5e-09 67.0 122 36.1
arahy.Tifrunner.gnm1.ann1.ZTBZ6L Arachis hypogaea HOM05D002645 ORTHO05D002741 2.6e-09 66.2 122 36.1
Oeu036512.1 Olea europaea HOM05D002645 ORTHO05D002741 4.4e-09 65.5 117 42.7
AUR62008154 Chenopodium quinoa HOM05D002645 ORTHO05D002741 7.5e-09 64.7 169 36.7
Ca_20988_v3 Cicer arietinum L. HOM05D002645 ORTHO05D002741 9.8e-09 64.3 144 35.4
Gorai.010G248200 Gossypium raimondii HOM05D002645 ORTHO05D002741 9.8e-09 64.3 140 32.1
Actinidia14194 Actinidia chinensis HOM05D002645 ORTHO05D002741 2.2e-08 63.2 122 34.4
Gohir.D06G218100 Gossypium hirsutum HOM05D002645 ORTHO05D002741 2.2e-08 63.2 140 32.1
Manes.09G084200 Manihot esculenta HOM05D002645 ORTHO05D002741 2.8e-08 62.8 147 34.7
Solyc06g071730.3 Solanum lycopersicum HOM05D002645 ORTHO05D002741 2.8e-08 62.8 70 55.7
Nn1g07770 Nelumbo nucifera HOM05D002645 ORTHO05D002741 3.7e-08 62.4 117 35.0
Cpa.g.sc27.218 Carica papaya HOM05D002645 ORTHO05D002741 4.9e-08 62.0 117 35.9
Glyma.17G005000 Glycine max HOM05D002645 ORTHO05D002741 4.9e-08 62.0 123 36.6
MBI15_g36663_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 4.9e-08 62.0 122 36.9
Rhsim13G0139800 Rhododendron simsii HOM05D002645 ORTHO05D002741 6.3e-08 61.6 121 34.7
ATR0824G127 Amborella trichopoda HOM05D002645 ORTHO05D002741 8.3e-08 61.2 149 33.6
ClCG01G021190 Citrullus lanatus HOM05D002645 ORTHO05D002741 8.3e-08 61.2 120 32.5
Psat0s3230g0040 Pisum sativum HOM05D002645 ORTHO05D002741 8.3e-08 61.2 149 33.6
TPR.G5943 Trifolium pratense HOM05D002645 ORTHO05D002741 8.3e-08 61.2 148 33.1
MELO3C008004.2 Cucumis melo HOM05D002645 ORTHO05D002741 1.1e-07 60.8 120 31.7
MELO3C022333.2 Cucumis melo HOM05D002645 ORTHO05D002741 1.1e-07 60.8 149 38.3
Duzib192G0266 Durio zibethinus HOM05D002645 ORTHO05D002741 1.1e-07 60.8 119 36.1
QL05p066957 Quercus lobata HOM05D002645 ORTHO05D002741 1.1e-07 60.8 150 30.7
QL05p067304 Quercus lobata HOM05D002645 ORTHO05D002741 1.1e-07 60.8 150 30.7
Thecc.06G241800 Theobroma cacao HOM05D002645 ORTHO05D002741 1.1e-07 60.8 141 34.8
Prupe.4G003000 Prunus persica HOM05D002645 ORTHO05D002741 1.4e-07 60.5 119 36.1
CSS0012457 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 2.4e-07 59.7 125 35.2
CSS0023137 Camellia sinensis var. sinensis HOM05D002645 ORTHO05D002741 2.4e-07 59.7 125 35.2
AUR62028735 Chenopodium quinoa HOM05D000032 ORTHO05D002561 2.4e-07 59.7 175 34.9
Lj4g0000891 Lotus japonicus HOM05D002645 ORTHO05D002741 2.4e-07 59.7 149 32.9
Phvul.003G087900 Phaseolus vulgaris HOM05D002645 ORTHO05D002741 2.4e-07 59.7 122 35.2
VMungo1215G2924 Vigna mungo HOM05D002645 ORTHO05D002741 2.4e-07 59.7 122 36.1
GSVIVG01002204001 Vitis vinifera HOM05D002645 ORTHO05D002741 2.4e-07 59.7 124 35.5
CsaV3_6G048200 Cucumis sativus L. HOM05D002645 ORTHO05D002741 3.1e-07 59.3 120 31.7
Medtr4g134130 Medicago truncatula HOM05D002645 ORTHO05D002741 3.1e-07 59.3 160 31.2
PGR004G1691 Punica granatum HOM05D002645 ORTHO05D002741 3.1e-07 59.3 118 36.4
CDE10G0794 Ceratophyllum demersum HOM05D002645 ORTHO05D002741 5.4e-07 58.5 121 38.0
PGR042G0736 Punica granatum HOM05D002645 ORTHO05D002741 5.4e-07 58.5 125 37.6
Atru.chr1.2243 Acer truncatum HOM05D002645 ORTHO05D002741 7.0e-07 58.2 120 32.5
Dinv07155 Davidia involucrata HOM05D002645 ORTHO05D002741 7.0e-07 58.2 121 38.8
TWI63G0163 Tripterygium wilfordii HOM05D002645 ORTHO05D002741 9.2e-07 57.8 122 33.6
TAR517G0005 Trochodendron aralioides HOM05D002645 ORTHO05D002741 1.2e-06 57.4 162 29.6
Migut.M01450 Erythranthe guttata HOM05D002645 ORTHO05D002741 1.6e-06 57.0 120 35.0
PGR042G2084 Punica granatum HOM05D002645 ORTHO05D002741 1.6e-06 57.0 125 36.0
Sabra06G0003300 Salix brachista HOM05D002645 ORTHO05D002741 1.6e-06 57.0 149 30.2
HPP92_015786 Vanilla planifolia HOM05D002645 ORTHO05D002741 1.6e-06 57.0 139 32.4
arahy.Tifrunner.gnm1.ann1.U2N233 Arachis hypogaea HOM05D002645 ORTHO05D002741 2.7e-06 56.2 77 46.8
MSTRG.13104 Avicennia marina HOM05D002645 ORTHO05D002741 2.7e-06 56.2 123 35.0
Ciclev10016013m.g Citrus clementina HOM05D002645 ORTHO05D002741 2.7e-06 56.2 122 34.4
Sed0027781 Sechium edule HOM05D002645 ORTHO05D002741 2.7e-06 56.2 159 30.2
FAN21G0857 Fragaria x ananassa HOM05D002645 ORTHO05D002741 3.5e-06 55.8 130 29.2
MBI15_g31884_MAGBIO Magnolia biondii HOM05D002645 ORTHO05D002741 3.5e-06 55.8 145 33.8
vmacro03600 Vaccinium macrocarpon HOM05D002645 ORTHO05D002741 3.5e-06 55.8 162 29.0
MD05G1362400 Malus domestica HOM05D002645 ORTHO05D002741 4.5e-06 55.5 139 30.9
Thhalv10001004m.g Eutrema salsugineum HOM05D002645 ORTHO05D002741 5.9e-06 55.1 154 31.8
Glyma.09G015200 Glycine max HOM05D002645 ORTHO05D002741 5.9e-06 55.1 122 33.6
SalBow1G0992 Salvia bowleyana HOM05D002645 ORTHO05D002741 5.9e-06 55.1 126 34.9
BraA02t08157Z Brassica rapa HOM05D002645 ORTHO05D002741 7.7e-06 54.7 146 30.8
Nn1g07769 Nelumbo nucifera HOM05D002645 ORTHO05D002741 7.7e-06 54.7 122 36.1
Sp2g12440 Schrenkiella parvula HOM05D002645 ORTHO05D002741 7.7e-06 54.7 122 31.1


User provided reference genes

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