Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1162600 Malus domestica HOM05D005518 ORTHO05D001269 9.6e-101 370.2 186 100.0
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 1.9e-88 329.3 186 87.6
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 1.1e-80 303.5 200 80.5
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 3.1e-67 258.8 199 70.4
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 4.2e-64 248.4 196 67.3
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 7.2e-64 247.7 199 67.3
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 2.1e-63 246.1 200 68.0
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 3.6e-63 245.4 199 67.3
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 7.9e-63 244.2 199 66.3
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 3.7e-60 235.3 191 66.5
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 6.1e-55 218.0 198 59.6
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 2.3e-54 216.1 194 61.3
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 9.7e-53 210.7 199 60.3
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 1.7e-52 209.9 188 59.6
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 8.2e-52 207.6 199 58.3
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 2.4e-51 206.1 188 58.5
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 4.5e-50 201.8 200 56.5
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 2.2e-49 199.5 201 56.2
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 3.8e-49 198.7 209 56.5
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 8.5e-49 197.6 199 56.8
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 8.5e-49 197.6 198 55.6
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 5.5e-48 194.9 209 55.5
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 7.2e-48 194.5 191 58.1
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-47 193.7 207 54.6
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 1.6e-47 193.4 191 56.5
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.6e-47 193.4 197 53.3
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 6.1e-47 191.4 190 57.9
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 8.0e-47 191.0 199 53.8
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 1.4e-46 190.3 195 55.4
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.4e-46 190.3 198 53.5
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.8e-46 189.9 196 55.6
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 5.2e-46 188.3 176 58.5
Ca_25438_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 6.7e-46 188.0 197 55.3
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 6.7e-46 188.0 196 52.6
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 1.1e-45 187.2 196 55.6
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 7.4e-45 184.5 189 57.1
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 7.4e-45 184.5 189 56.1
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 6.3e-44 181.4 198 56.1
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 1.8e-43 179.9 198 51.5
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 1.8e-43 179.9 198 53.0
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 2.4e-43 179.5 202 52.5
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 2.4e-43 179.5 141 68.8
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 4.1e-43 178.7 198 53.0
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 4.1e-43 178.7 189 56.1
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 4.1e-43 178.7 194 52.6
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 7.0e-43 177.9 185 54.6
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 9.1e-43 177.6 199 51.3
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 9.1e-43 177.6 191 53.4
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 2.6e-42 176.0 200 53.5
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 3.5e-42 175.6 195 52.3
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 4.5e-42 175.3 196 53.1
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 5.0e-41 171.8 197 52.3
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 1.5e-40 170.2 206 48.5
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 2.5e-40 169.5 192 52.1
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 2.5e-40 169.5 199 51.3
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 3.2e-40 169.1 196 51.0
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 5.5e-40 168.3 190 52.6
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 7.2e-40 167.9 203 49.8
CSS0040133 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 1.2e-39 167.2 203 50.2
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.6e-39 165.6 206 49.0
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 3.6e-39 165.6 199 48.2
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 6.1e-39 164.9 210 47.1
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 8.0e-39 164.5 188 51.6
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.4e-38 163.7 190 51.1
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 4.0e-38 162.2 207 47.8
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 7.5e-37 157.9 187 50.8
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 7.5e-37 157.9 191 49.2
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 8.3e-36 154.5 198 49.5
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 8.3e-36 154.5 207 45.9
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 1.1e-35 154.1 198 49.5
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 1.4e-35 153.7 205 49.3
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 2.4e-35 152.9 198 48.0
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 2.4e-35 152.9 194 49.0
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 4.1e-35 152.1 208 47.6
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 9.1e-35 151.0 202 46.5
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 1.2e-34 150.6 203 46.3
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.6e-34 150.2 202 49.5
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 3.5e-34 149.1 208 44.7
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 5.9e-34 148.3 197 47.7
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 1.0e-33 147.5 203 46.8
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 1.3e-33 147.1 202 45.5
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 1.7e-33 146.7 212 47.2
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 3.8e-33 145.6 203 46.3
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.9e-32 143.3 202 46.5
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 2.5e-32 142.9 191 46.1
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 2.5e-32 142.9 212 45.3
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 4.2e-32 142.1 201 45.8
vmacro16713 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 7.2e-32 141.4 198 46.5
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 1.2e-31 140.6 201 45.3
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 2.7e-31 139.4 200 43.5
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.3e-30 136.3 187 44.9
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 8.8e-30 134.4 205 43.4
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 2.0e-29 133.3 194 44.3
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 2.6e-29 132.9 88 75.0
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 4.4e-29 132.1 192 42.2
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 1.8e-27 126.7 144 48.6
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 7.0e-27 124.8 190 43.2
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 7.0e-27 124.8 203 44.3
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 2.0e-26 123.2 182 42.3
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 2.3e-25 119.8 190 43.7
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.1e-24 117.5 138 51.4
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 3.3e-24 115.9 186 40.9
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 1.2e-23 114.0 208 38.5
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 1.6e-23 113.6 181 43.6
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 3.6e-23 112.5 202 39.1
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 4.7e-23 112.1 189 39.7
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 8.0e-23 111.3 202 39.1
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 1.4e-22 110.5 189 41.8
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 5.2e-22 108.6 202 37.1
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 1.2e-21 107.5 197 38.6
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 1.2e-21 107.5 197 38.6
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 1.2e-21 107.5 197 38.6
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 1.5e-21 107.1 197 39.1
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 2.0e-21 106.7 197 39.1
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 2.0e-21 106.7 195 36.9
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 3.4e-21 105.9 203 38.4
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 7.5e-21 104.8 190 36.8
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 1.3e-20 104.0 193 38.3
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 8.3e-20 101.3 190 35.3
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 8.3e-20 101.3 202 37.1
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 7.8e-18 94.7 200 34.5
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.0e-17 94.4 125 50.4
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 8.6e-17 91.3 227 32.6
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 7.3e-16 88.2 185 36.2
SEGI_11479 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.9e-12 76.3 236 31.4
arahy.Tifrunner.gnm1.ann1.QJ9WGP Arachis hypogaea HOM05D001134 ORTHO05D001035 9.5e-08 61.2 49 71.4
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.4e-06 57.4 64 45.3
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 2.3e-06 56.6 234 31.2


User provided reference genes

Program Settings