Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 4.1e-249 864.4 468 100.0
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 2.9e-207 725.3 484 83.3
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.3e-182 641.7 474 75.7
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.5e-182 640.6 474 75.5
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 6.2e-181 637.9 474 75.5
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 7.6e-179 630.9 415 77.3
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 4.2e-177 625.2 474 74.5
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 2.6e-171 605.9 475 74.7
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.4e-163 578.9 481 69.4
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 2.1e-160 569.7 476 64.9
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 1.5e-158 563.5 391 72.1
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 2.5e-158 562.8 396 71.0
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 4.8e-157 558.5 359 75.8
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 6.2e-157 558.1 406 70.4
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.8e-156 556.6 413 67.6
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 1.8e-156 556.6 413 69.2
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 1.8e-156 556.6 399 71.2
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.4e-156 556.2 399 71.2
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 5.8e-155 551.6 401 69.6
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 5.8e-155 551.6 394 69.5
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 9.3e-153 544.3 422 66.8
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 3.0e-151 539.3 413 68.0
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.7e-151 538.1 403 68.0
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.5e-150 537.0 394 68.3
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.9e-150 536.6 409 66.7
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 3.3e-150 535.8 398 68.1
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 9.6e-150 534.3 399 65.9
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 6.2e-149 531.6 400 67.2
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 6.2e-149 531.6 418 65.8
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 8.2e-149 531.2 404 66.8
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.1e-148 530.8 410 66.1
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-148 530.4 430 64.2
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.4e-148 529.6 397 67.3
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 4.0e-148 528.9 400 66.8
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 6.9e-148 528.1 470 61.3
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 6.9e-148 528.1 419 64.4
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 9.0e-148 527.7 406 65.8
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 9.0e-148 527.7 429 63.2
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.5e-147 526.9 425 63.8
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.0e-147 526.6 359 71.3
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.6e-147 526.2 414 65.7
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 2.6e-147 526.2 398 64.1
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 8.4e-146 521.2 396 66.2
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.2e-144 517.3 428 62.9
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.5e-144 515.8 451 60.1
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 4.6e-144 515.4 422 63.3
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 7.9e-144 514.6 430 61.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.0e-143 514.2 405 64.0
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.8e-143 513.5 405 63.7
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 2.3e-143 513.1 391 66.0
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 1.5e-142 510.4 411 64.2
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.3e-142 509.2 423 62.6
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 9.7e-142 507.7 420 62.4
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.6e-141 506.9 417 64.3
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 1.6e-141 506.9 361 67.6
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 2.2e-141 506.5 358 70.4
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 2.8e-141 506.1 341 71.6
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 3.7e-141 505.8 360 68.1
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 4.8e-141 505.4 401 63.8
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.1e-140 504.2 416 63.2
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 1.1e-140 504.2 401 64.1
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.1e-140 504.2 412 62.6
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 5.3e-140 501.9 369 65.3
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 5.3e-140 501.9 369 67.2
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.2e-139 500.7 341 70.7
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 1.2e-139 500.7 369 67.2
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.6e-139 499.6 400 62.8
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 5.9e-139 498.4 350 70.0
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 7.7e-139 498.0 410 61.2
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 1.0e-138 497.7 479 56.8
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.3e-138 497.3 369 66.7
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 1.7e-138 496.9 340 71.5
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.7e-138 496.9 403 63.5
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 1.7e-138 496.9 402 63.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.9e-138 496.1 385 64.9
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.1e-137 494.2 416 60.8
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 1.4e-137 493.8 357 67.2
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 1.9e-137 493.4 392 62.8
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 3.2e-137 492.7 391 66.8
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 7.2e-137 491.5 415 61.7
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 2.1e-136 490.0 410 62.4
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 3.6e-136 489.2 411 59.6
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 1.8e-135 486.9 411 62.3
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.1e-134 484.2 412 60.7
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 2.0e-134 483.4 415 60.0
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 3.3e-134 482.6 445 56.4
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.7e-133 480.3 438 58.7
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.7e-133 480.3 438 58.7
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 5.3e-132 475.3 415 59.0
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 5.3e-132 475.3 383 59.8
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 1.5e-131 473.8 467 58.9
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.6e-131 473.0 385 60.0
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 2.6e-131 473.0 424 57.3
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 3.4e-131 472.6 400 60.5
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.2e-130 469.9 322 71.1
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 5.0e-130 468.8 380 60.0
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-129 467.6 382 59.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 2.5e-129 466.5 383 59.8
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 2.5e-129 466.5 385 59.0
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 5.5e-129 465.3 414 57.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 9.4e-129 464.5 365 61.9
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 8.8e-127 458.0 461 56.0
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-126 457.2 371 60.6
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 1.5e-126 457.2 362 60.2
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 1.5e-126 457.2 362 60.2
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 9.7e-126 454.5 419 56.1
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 1.3e-125 454.1 421 56.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.2e-125 453.4 449 53.5
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 3.7e-125 452.6 356 60.7
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.8e-124 450.3 461 56.2
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 2.0e-123 446.8 359 60.7
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.8e-122 442.6 400 63.8
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 6.5e-122 441.8 333 66.4
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.2e-119 432.2 415 56.6
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 4.4e-118 429.1 405 53.8
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 5.3e-116 422.2 292 72.3
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 1.1e-113 414.5 363 57.9
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.3e-111 406.8 415 50.8
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 4.0e-111 406.0 292 66.8
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 1.5e-110 404.1 431 48.5
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 2.0e-110 403.7 361 57.3
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.9e-106 389.8 451 50.6
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.0e-106 389.0 429 51.7
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 3.2e-105 386.3 290 64.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 6.6e-98 362.1 299 62.2
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 8.6e-98 361.7 290 60.7
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 9.8e-94 348.2 411 49.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-83 314.7 289 56.4
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.2e-83 314.7 418 44.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 7.8e-83 312.0 439 42.6
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 6.6e-82 308.9 296 54.1
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-79 301.6 408 47.1
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.1e-79 301.6 378 43.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 5.6e-73 279.3 341 47.2
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 8.9e-71 271.9 181 67.4
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 8.4e-61 238.8 322 46.0
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.3e-58 231.5 363 41.3
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.3e-58 231.5 363 41.3
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.1e-56 224.2 228 53.5
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.8e-54 216.1 177 66.1
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 2.4e-52 210.7 303 40.9
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.1e-48 197.6 230 47.8
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 3.6e-48 196.8 166 58.4
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 8.1e-48 195.7 421 35.4
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 4.9e-45 186.4 365 35.3
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-29 134.8 121 53.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 1.1e-28 132.1 373 29.2
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.9e-28 131.3 380 27.6
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.0e-23 112.5 99 60.6
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 3.8e-21 107.1 100 58.0
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 6.1e-19 99.8 128 43.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.4e-18 98.6 276 26.8
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-16 91.7 53 81.1
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 1.1e-15 89.0 86 52.3
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 1.1e-15 89.0 86 52.3
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.3e-10 71.2 75 49.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 2.8e-08 64.3 42 76.2
FvH4_5g07800 Fragaria vesca HOM05D042205 ORTHO05D002856 1.4e-07 62.0 127 36.2


User provided reference genes

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