Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 2.0e-239 832.0 421 100.0
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.9e-213 745.7 425 89.4
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.2e-183 646.7 413 79.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.6e-183 646.4 413 78.5
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 3.5e-183 645.2 428 75.9
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 1.7e-182 642.9 413 78.5
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 6.6e-182 641.0 413 75.5
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 7.3e-181 637.5 419 73.7
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 8.9e-179 630.6 422 72.7
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 8.3e-177 624.0 437 68.9
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 8.3e-177 624.0 453 70.2
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.1e-176 623.6 422 72.3
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.4e-176 622.5 425 71.5
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 2.4e-176 622.5 420 76.7
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.2e-176 622.1 425 71.5
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.2e-175 620.2 419 72.1
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.0e-175 619.4 425 71.1
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 2.7e-175 619.0 422 75.1
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.5e-173 613.2 428 72.7
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.5e-173 613.2 419 70.6
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.5e-173 612.5 428 74.8
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 3.3e-173 612.1 416 74.0
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 2.1e-172 609.4 425 69.2
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 6.2e-172 607.8 437 67.5
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 8.1e-172 607.4 437 67.5
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 2.3e-171 605.9 416 70.4
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 4.0e-171 605.1 421 69.6
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 2.6e-170 602.4 425 69.4
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.1e-168 597.0 427 70.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 3.2e-168 595.5 424 68.6
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 9.2e-168 594.0 421 67.2
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.6e-167 591.7 420 72.4
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 4.6e-167 591.7 419 72.1
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 1.3e-166 590.1 426 68.3
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 1.5e-165 586.6 418 67.2
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.9e-165 586.3 417 68.3
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 3.3e-165 585.5 418 70.1
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.3e-165 585.5 421 68.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 4.3e-165 585.1 417 67.6
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 2.1e-164 582.8 429 66.0
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 6.2e-164 581.3 422 68.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 8.1e-164 580.9 432 66.2
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 8.1e-164 580.9 389 74.3
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 4.0e-163 578.6 421 67.0
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 5.2e-163 578.2 436 66.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 6.8e-163 577.8 421 66.3
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 1.2e-162 577.0 426 66.9
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 1.2e-162 577.0 421 66.3
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.2e-162 577.0 420 66.7
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.2e-162 577.0 417 66.7
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 1.5e-162 576.6 421 66.3
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 2.0e-162 576.2 421 66.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 4.4e-162 575.1 419 66.1
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 4.4e-162 575.1 422 65.6
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 7.6e-162 574.3 421 65.6
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 7.6e-162 574.3 413 70.0
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 9.9e-162 573.9 421 66.3
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 6.4e-161 571.2 488 64.5
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 1.9e-160 569.7 424 67.0
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.9e-160 569.7 428 68.7
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 3.2e-160 568.9 416 68.5
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 5.4e-160 568.2 420 65.0
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 9.2e-160 567.4 428 64.7
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 9.2e-160 567.4 432 67.8
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.2e-159 567.0 459 63.8
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 2.1e-159 566.2 444 67.3
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 2.7e-159 565.8 431 66.1
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 4.6e-159 565.1 427 66.3
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 6.0e-159 564.7 418 66.7
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.0e-158 563.9 403 66.0
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 1.0e-158 563.9 431 65.9
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 1.7e-158 563.1 457 65.9
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.0e-158 562.4 421 66.7
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 1.5e-157 560.1 420 68.3
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 6.2e-156 554.7 413 66.8
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.1e-155 552.4 418 68.2
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.5e-154 550.1 429 68.5
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.0e-154 549.7 405 69.1
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 2.6e-154 549.3 390 69.5
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 3.4e-154 548.9 393 70.7
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 4.4e-154 548.5 415 66.7
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 2.1e-151 539.7 332 74.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 1.3e-150 537.0 435 61.1
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.1e-149 533.9 436 65.4
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.3e-148 530.4 423 63.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 2.8e-148 529.3 419 61.8
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 2.6e-146 522.7 415 61.9
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 7.6e-146 521.2 474 57.4
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 1.3e-145 520.4 450 62.0
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 1.4e-144 516.9 414 63.3
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 8.7e-142 507.7 390 65.4
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.6e-140 503.4 413 61.7
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 4.8e-140 501.9 317 73.5
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-139 500.0 326 73.3
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 4.9e-137 491.9 329 71.7
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 4.8e-132 475.3 300 73.7
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 1.4e-131 473.8 301 72.8
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 3.1e-131 472.6 332 66.9
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 9.0e-131 471.1 412 60.2
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 9.0e-131 471.1 422 62.1
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.3e-129 467.2 302 71.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.6e-127 460.3 310 72.3
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.5e-127 459.1 337 65.6
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 7.4e-125 451.4 424 52.6
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 1.0e-121 441.0 429 51.5
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 2.8e-116 422.9 406 52.0
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 2.4e-115 419.9 436 55.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 5.3e-115 418.7 419 52.0
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 7.7e-114 414.8 312 65.1
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.9e-107 391.7 294 65.0
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 1.5e-96 357.5 278 66.2
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 8.0e-95 351.7 316 55.1
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 5.5e-80 302.4 282 62.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 1.0e-73 281.6 458 38.2
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.3e-73 280.4 183 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 7.5e-69 265.4 222 55.4
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 2.2e-60 237.3 374 38.8
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 3.2e-59 233.4 579 30.4
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 1.0e-57 228.4 419 36.8
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 3.6e-55 219.9 245 50.6
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.2e-45 188.3 131 71.8
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 2.2e-44 184.1 210 49.5
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 4.6e-42 176.4 115 71.3
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 2.5e-40 170.6 123 69.9
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 8.1e-39 165.6 119 68.1
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 1.3e-28 131.7 256 37.1
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 6.2e-23 112.8 122 54.1
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 4.0e-22 110.2 139 46.0
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 6.4e-20 102.8 107 46.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.1e-11 75.5 62 56.5
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 1.5e-08 65.1 64 51.6
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 1.5e-08 65.1 62 56.5
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 2.2e-07 61.2 103 37.9


User provided reference genes

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